Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99600 * 2 1 4 4 H 1.48492 * 109.47221 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47136 * 119.99959 * 3 2 1 6 6 H 1.48494 * 109.46812 * 239.99637 * 3 2 1 7 7 C 1.38804 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.46825 * 125.37855 * 179.97438 * 9 7 2 11 11 C 1.53899 * 107.50085 * 181.00556 * 10 9 7 12 12 H 1.08999 * 109.09951 * 260.22942 * 11 10 9 13 13 C 1.50774 * 110.59121 * 140.15235 * 11 10 9 14 14 C 1.51328 * 113.46854 * 289.13177 * 13 11 10 15 15 C 1.51607 * 112.05552 * 304.71518 * 14 13 11 16 16 N 1.44503 * 112.73761 * 42.34105 * 15 14 13 17 17 C 1.34774 * 116.65087 * 154.48344 * 16 15 14 18 18 O 1.21540 * 120.00029 * 178.46354 * 17 16 15 19 19 C 1.47971 * 120.00138 * 358.46504 * 17 16 15 20 20 C 1.39732 * 119.43011 * 188.93907 * 19 17 16 21 21 C 1.36987 * 119.59752 * 179.72622 * 20 19 17 22 22 C 1.39891 * 118.36133 * 0.53323 * 21 20 19 23 23 N 1.35437 * 133.81347 * 179.73409 * 22 21 20 24 24 C 1.30210 * 109.57942 * 180.02562 * 23 22 21 25 25 N 1.35996 * 110.18200 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.29664 * 180.02562 * 25 24 23 27 27 C 1.37945 * 107.41169 * 0.02562 * 25 24 23 28 28 N 1.31882 * 133.83009 * 179.97438 * 27 25 24 29 29 C 1.44114 * 126.69578 * 334.45831 * 16 15 14 30 30 H 1.09000 * 109.49639 * 254.12835 * 29 16 15 31 31 C 1.46903 * 125.37555 * 359.69269 * 9 7 2 32 32 H 0.96999 * 120.00492 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.84687 * 300.49055 * 10 9 7 34 34 H 1.08998 * 109.84580 * 61.52148 * 10 9 7 35 35 H 1.09002 * 108.68080 * 50.15932 * 13 11 10 36 36 H 1.09003 * 108.68317 * 168.09744 * 13 11 10 37 37 H 1.09001 * 108.96236 * 65.37643 * 14 13 11 38 38 H 1.09000 * 108.96265 * 184.13362 * 14 13 11 39 39 H 1.09007 * 108.82967 * 163.18135 * 15 14 13 40 40 H 1.08996 * 108.82908 * 281.49806 * 15 14 13 41 41 H 1.08001 * 120.19838 * 359.97438 * 20 19 17 42 42 H 1.08007 * 120.81963 * 180.26576 * 21 20 19 43 43 H 1.07997 * 124.91238 * 180.02562 * 24 23 22 44 44 H 1.09006 * 110.08512 * 281.32223 * 31 9 7 45 45 H 1.09003 * 110.09016 * 42.89336 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9375 -3.7227 0.0005 11 6 0.7963 -4.7549 -0.0252 12 1 0.6329 -5.1312 0.9846 13 6 1.1443 -5.9077 -0.9326 14 6 1.1357 -5.5426 -2.4011 15 6 -0.1880 -4.9408 -2.8304 16 7 -0.7111 -3.9981 -1.8683 17 6 -1.5415 -3.0483 -2.3424 18 8 -2.0388 -2.2411 -1.5819 19 6 -1.8477 -2.9883 -3.7888 20 6 -2.5542 -1.8947 -4.2962 21 6 -2.8347 -1.8328 -5.6356 22 6 -2.4080 -2.8847 -6.4532 23 7 -2.5143 -3.1451 -7.7780 24 6 -1.9382 -4.2814 -8.0470 25 7 -1.4229 -4.8263 -6.9125 26 1 -0.9453 -5.6679 -6.8454 27 6 -1.7042 -3.9621 -5.8748 28 7 -1.4521 -3.9765 -4.5804 29 6 -0.4366 -3.9693 -0.4538 30 1 -1.3070 -4.3319 0.0931 31 6 -0.1369 -2.5258 0.0064 32 1 -0.4851 0.8400 -0.0004 33 1 2.5646 -3.8424 -0.8829 34 1 2.5361 -3.8554 0.9017 35 1 2.1373 -6.2719 -0.6692 36 1 0.4259 -6.7108 -0.7681 37 1 1.9309 -4.8218 -2.5916 38 1 1.3231 -6.4402 -2.9904 39 1 -0.0498 -4.4305 -3.7837 40 1 -0.9122 -5.7440 -2.9656 41 1 -2.8736 -1.1011 -3.6370 42 1 -3.3757 -0.9947 -6.0496 43 1 -1.8774 -4.7264 -9.0292 44 1 -0.5241 -2.3632 1.0123 45 1 -0.5829 -1.8125 -0.6867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050072615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 105.371026 kcal Electronic energy + Delta-G solvation = -30977.460622 eV Core-core repulsion = 26997.410259 eV Total energy + Delta-G solvation = -3980.050363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.42279 -42.02475 -39.80517 -38.60282 -37.00786 -35.06250 -34.45952 -33.74391 -32.35521 -31.62229 -30.85445 -28.77829 -27.32615 -26.23930 -25.13904 -24.55925 -23.33322 -22.69079 -22.58052 -21.29976 -19.70760 -19.21354 -19.03482 -18.47057 -18.07336 -17.32470 -17.12642 -16.73256 -16.32327 -16.15739 -15.76599 -15.67836 -15.59458 -15.21261 -14.96802 -14.45460 -14.28140 -13.94085 -13.91609 -13.79209 -13.57693 -13.42441 -13.01200 -13.00376 -12.71274 -12.62135 -12.30951 -12.14862 -12.11537 -11.87926 -11.68311 -11.49162 -11.45519 -11.33100 -10.87557 -10.50168 -10.02663 -9.92888 -9.58182 -9.27220 -8.79315 -7.67978 -5.15318 -0.63950 0.10493 1.42167 1.46435 1.47426 1.50035 1.53372 1.95995 2.12564 2.50591 2.75887 3.01248 3.25472 3.37251 3.46728 3.66730 3.70754 3.81507 3.92007 3.96900 4.04153 4.12252 4.18131 4.23014 4.58417 4.60756 4.62756 4.68774 4.74537 4.77173 4.91353 4.94397 4.95650 5.00092 5.12150 5.17028 5.26518 5.35639 5.43916 5.44952 5.49493 5.54611 5.83971 6.07467 6.09879 6.38891 6.58624 6.64847 6.71886 7.14788 7.25065 7.86145 8.48216 9.30237 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.004360 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.310761 B = 6421.018730 C = 7831.747000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.078 0.922 9 N -0.623 5.623 10 C 0.136 3.864 11 C -0.088 4.088 12 H 0.089 0.911 13 C -0.098 4.098 14 C -0.127 4.127 15 C 0.103 3.897 16 N -0.563 5.563 17 C 0.539 3.461 18 O -0.539 6.539 19 C 0.101 3.899 20 C -0.130 4.130 21 C -0.030 4.030 22 C 0.012 3.988 23 N -0.532 5.532 24 C 0.317 3.683 25 N -0.572 5.572 26 H 0.448 0.552 27 C 0.210 3.790 28 N -0.434 5.434 29 C 0.136 3.864 30 H 0.060 0.940 31 C 0.131 3.869 32 H 0.243 0.757 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.167 0.833 43 H 0.285 0.715 44 H -0.027 1.027 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -17.793 -17.999 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.257 4.257 3 Si 0.803 3.197 4 H -0.220 1.220 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.107 4.107 12 H 0.108 0.892 13 C -0.135 4.135 14 C -0.164 4.164 15 C -0.019 4.019 16 N -0.293 5.293 17 C 0.326 3.674 18 O -0.416 6.416 19 C -0.045 4.045 20 C -0.153 4.153 21 C -0.057 4.057 22 C -0.109 4.109 23 N -0.252 5.252 24 C 0.030 3.970 25 N -0.188 5.188 26 H 0.292 0.708 27 C -0.029 4.029 28 N -0.151 5.151 29 C 0.031 3.969 30 H 0.078 0.922 31 C 0.006 3.994 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.162 0.838 42 H 0.185 0.815 43 H 0.300 0.700 44 H -0.009 1.009 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.782 -17.390 -17.782 25.027 hybrid contribution 0.528 1.218 1.087 1.716 sum -2.254 -16.172 -16.695 23.353 Atomic orbital electron populations 1.70216 1.05960 1.24753 1.57156 1.25692 0.96568 1.00911 1.02578 0.85211 0.77142 0.79150 0.78150 1.21992 1.20246 1.20377 1.19336 0.90755 0.83905 1.43970 0.90386 1.44631 1.02479 1.01035 1.86834 1.21497 0.94953 0.84826 0.97645 1.21291 0.92767 0.95559 1.01115 0.89239 1.20552 1.03404 0.95787 0.93796 1.21257 0.96402 1.01761 0.97015 1.21968 0.95499 0.92221 0.92210 1.46601 1.44771 1.29993 1.07952 1.18404 0.80868 0.81294 0.86827 1.90813 1.52586 1.40536 1.57642 1.20782 0.98618 0.92568 0.92565 1.21534 0.98705 0.98816 0.96282 1.20612 0.97069 0.97383 0.90653 1.20105 1.01757 0.96566 0.92436 1.70470 1.25306 1.17244 1.12210 1.26785 0.88597 0.88552 0.93066 1.42891 1.49301 1.21663 1.04967 0.70781 1.19501 1.00927 0.93218 0.89253 1.67080 1.18802 1.26954 1.02258 1.21016 0.97401 0.97927 0.80564 0.92171 1.22331 0.83987 0.95104 0.97994 0.94704 0.95569 0.96096 0.89626 0.89972 0.93842 0.87002 0.86775 0.91123 0.83751 0.81505 0.69965 1.00934 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.82 10.17 21.65 0.22 -60.60 16 2 C -0.06 -3.89 5.48 84.86 0.47 -3.43 16 3 Si 0.98 48.79 29.55 68.60 2.03 50.82 16 4 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.25 -15.15 10.25 84.03 0.86 -14.29 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -35.00 3.39 -695.57 -2.36 -37.36 16 10 C 0.14 5.93 6.74 86.62 0.58 6.52 16 11 C -0.09 -3.10 2.96 -11.43 -0.03 -3.13 16 12 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 13 C -0.10 -2.41 5.10 29.32 0.15 -2.26 16 14 C -0.13 -3.08 5.84 29.59 0.17 -2.90 16 15 C 0.10 2.97 4.90 86.29 0.42 3.39 16 16 N -0.56 -21.94 3.09 -812.58 -2.51 -24.45 16 17 C 0.54 23.41 7.01 86.82 0.61 24.01 16 18 O -0.54 -28.11 13.20 -3.84 -0.05 -28.16 16 19 C 0.10 3.59 6.52 41.96 0.27 3.87 16 20 C -0.13 -4.29 9.55 22.34 0.21 -4.07 16 21 C -0.03 -0.81 10.16 22.38 0.23 -0.59 16 22 C 0.01 0.32 7.25 39.69 0.29 0.60 16 23 N -0.53 -10.84 11.27 -191.66 -2.16 -13.00 16 24 C 0.32 3.05 12.96 180.04 2.33 5.38 16 25 N -0.57 -6.77 6.22 -195.70 -1.22 -7.99 16 26 H 0.45 1.92 8.96 -92.71 -0.83 1.08 16 27 C 0.21 4.96 8.46 134.06 1.13 6.09 16 28 N -0.43 -12.49 5.72 -181.83 -1.04 -13.53 16 29 C 0.14 5.80 3.24 45.71 0.15 5.95 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 C 0.13 7.33 4.67 86.80 0.41 7.74 16 32 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.03 1.12 6.70 -2.39 -0.02 1.11 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.26 7.10 -2.39 -0.02 1.24 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.12 3.44 4.72 -50.80 -0.24 3.20 16 40 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 41 H 0.14 5.07 7.64 -2.91 -0.02 5.05 16 42 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.29 -1.09 8.06 -2.91 -0.02 -1.11 16 44 H -0.03 -1.72 8.14 -2.38 -0.02 -1.74 16 45 H 0.12 7.64 2.89 -10.43 -0.03 7.61 16 Total: -1.00 -89.17 350.32 1.14 -88.04 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -0.03 Total: 13.34 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 8.25 Total: 32.89 kcal Atomic # 7 Polarization: -147.86 SS G_CDS: -9.06 Total: -156.93 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -89.17 1.14 -88.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050072615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.407 kcal (2) G-P(sol) polarization free energy of solvation -89.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds