Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48500 * 109.46933 * 239.99817 * 3 2 1 5 5 H 1.48498 * 109.47490 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47057 * 120.00081 * 3 2 1 7 7 C 1.38810 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99803 * 197.65189 * 7 2 1 9 9 N 1.36934 * 119.99876 * 17.64652 * 7 2 1 10 10 C 1.46895 * 120.46556 * 28.44867 * 9 7 2 11 11 C 1.53351 * 108.74079 * 124.38448 * 10 9 7 12 12 C 1.52552 * 109.12806 * 52.26520 * 11 10 9 13 13 C 1.52960 * 114.06681 * 75.53759 * 12 11 10 14 14 N 1.47152 * 87.85755 * 139.44380 * 13 12 11 15 15 C 1.34782 * 136.00212 * 153.33675 * 14 13 12 16 16 O 1.21543 * 119.99784 * 0.02562 * 15 14 13 17 17 C 1.47973 * 119.99693 * 180.27461 * 15 14 13 18 18 C 1.39732 * 119.42541 * 179.45518 * 17 15 14 19 19 C 1.36983 * 119.60290 * 179.78465 * 18 17 15 20 20 C 1.39902 * 118.35774 * 0.46051 * 19 18 17 21 21 N 1.35435 * 133.81222 * 179.77881 * 20 19 18 22 22 C 1.30222 * 109.57502 * 180.02562 * 21 20 19 23 23 N 1.35998 * 110.17937 * 0.02562 * 22 21 20 24 24 H 0.96993 * 126.29221 * 179.97438 * 23 22 21 25 25 C 1.37946 * 107.41434 * 359.97438 * 23 22 21 26 26 N 1.31885 * 133.82869 * 180.02562 * 25 23 22 27 27 C 1.47165 * 87.99683 * 333.59418 * 14 13 12 28 28 C 1.52561 * 113.42903 * 302.66535 * 12 11 10 29 29 C 1.46885 * 120.46171 * 208.47335 * 9 7 2 30 30 H 0.97008 * 119.99636 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58778 * 4.60900 * 10 9 7 32 32 H 1.09000 * 109.71816 * 244.23922 * 10 9 7 33 33 H 1.08996 * 109.53363 * 292.36835 * 11 10 9 34 34 H 1.09001 * 109.58873 * 172.19277 * 11 10 9 35 35 H 1.09007 * 113.48494 * 24.69427 * 13 12 11 36 36 H 1.09004 * 113.54634 * 254.20264 * 13 12 11 37 37 H 1.07999 * 120.19829 * 0.02562 * 18 17 15 38 38 H 1.08003 * 120.82773 * 180.23926 * 19 18 17 39 39 H 1.07995 * 124.91096 * 179.97438 * 22 21 20 40 40 H 1.09004 * 113.48598 * 141.15983 * 27 14 13 41 41 H 1.09004 * 113.49022 * 271.65644 * 27 14 13 42 42 H 1.09005 * 109.52591 * 177.21636 * 28 12 11 43 43 H 1.08996 * 109.52644 * 297.42102 * 28 12 11 44 44 H 1.08998 * 109.58901 * 355.37895 * 29 9 7 45 45 H 1.08996 * 109.59469 * 115.82946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0521 -1.2240 0.2842 9 7 1.3739 -2.3603 -0.3584 10 6 0.2447 -2.3293 -1.2975 11 6 0.5540 -3.2667 -2.4711 12 6 0.9415 -4.6381 -1.9267 13 6 -0.2408 -5.4632 -1.4158 14 7 0.3853 -6.6420 -2.0353 15 6 0.3720 -7.9725 -1.8201 16 8 -0.2899 -8.4346 -0.9115 17 6 1.1676 -8.8700 -2.6868 18 6 1.1541 -10.2464 -2.4459 19 6 1.8857 -11.0810 -3.2487 20 6 2.6357 -10.5165 -4.2861 21 7 3.4516 -11.0273 -5.2387 22 6 3.9172 -10.0617 -5.9781 23 7 3.4314 -8.8662 -5.5488 24 1 3.6270 -7.9964 -5.9310 25 6 2.6093 -9.1179 -4.4700 26 7 1.8864 -8.3536 -3.6747 27 6 1.0376 -5.7303 -2.9887 28 6 2.1310 -4.5980 -0.9722 29 6 1.8105 -3.6508 0.1905 30 1 -0.4850 0.8401 -0.0004 31 1 0.1051 -1.3137 -1.6679 32 1 -0.6624 -2.6622 -0.7930 33 1 1.3798 -2.8598 -3.0547 34 1 -0.3277 -3.3621 -3.1048 35 1 -1.1921 -5.1871 -1.8707 36 1 -0.2942 -5.5206 -0.3285 37 1 0.5673 -10.6501 -1.6341 38 1 1.8866 -12.1482 -3.0828 39 1 4.5921 -10.1914 -6.8111 40 1 2.0630 -6.0126 -3.2277 41 1 0.4377 -5.5276 -3.8760 42 1 2.3213 -5.5990 -0.5850 43 1 3.0122 -4.2380 -1.5032 44 1 2.7024 -3.5057 0.8001 45 1 1.0138 -4.0771 0.8001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050556444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 122.834709 kcal Electronic energy + Delta-G solvation = -29442.250606 eV Core-core repulsion = 25462.957526 eV Total energy + Delta-G solvation = -3979.293081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.72983 -40.81067 -39.14618 -37.65178 -35.90424 -34.14392 -32.52515 -31.67173 -30.81696 -30.25773 -29.63313 -27.26914 -26.09922 -24.86483 -24.09086 -23.38383 -22.36327 -22.01369 -21.00395 -19.85570 -19.00463 -18.00827 -17.77437 -17.31006 -16.50664 -16.15482 -15.99595 -15.51438 -15.27191 -14.92151 -14.81525 -14.16237 -13.87900 -13.86181 -13.56876 -13.46683 -13.27615 -12.91947 -12.73504 -12.55270 -12.28437 -11.87052 -11.64432 -11.60443 -11.41335 -11.38623 -11.07929 -10.72313 -10.48328 -10.42499 -10.21411 -10.03754 -9.84022 -9.65778 -9.57417 -9.31298 -9.27019 -8.95687 -8.52570 -8.45485 -6.66145 -5.79548 -3.21981 0.11447 0.87221 2.07813 2.16022 2.78137 2.84714 3.37597 3.43622 3.44565 3.61650 3.64117 3.92117 4.16113 4.47025 4.49483 4.63802 4.67055 4.72574 5.10767 5.20973 5.25461 5.36798 5.38438 5.52213 5.58583 5.65050 5.67895 5.68639 5.74791 5.92135 5.96982 6.08278 6.11534 6.19458 6.28212 6.47367 6.57770 6.61908 6.63720 6.66789 6.83124 6.96884 7.21663 7.32110 7.33961 7.64453 7.78152 7.79107 8.13386 8.45528 9.21311 9.84712 10.41298 11.28591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002534 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.409475 B =11047.981419 C =11834.822986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.123 4.123 12 C -0.080 4.080 13 C 0.114 3.886 14 N -0.619 5.619 15 C 0.595 3.405 16 O -0.536 6.536 17 C 0.130 3.870 18 C -0.125 4.125 19 C -0.028 4.028 20 C 0.020 3.980 21 N -0.493 5.493 22 C 0.285 3.715 23 N -0.587 5.587 24 H 0.432 0.568 25 C 0.234 3.766 26 N -0.445 5.445 27 C 0.117 3.883 28 C -0.105 4.105 29 C 0.147 3.853 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.227 0.773 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -18.971 -13.648 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.163 4.163 12 C -0.081 4.081 13 C -0.007 4.007 14 N -0.352 5.352 15 C 0.383 3.617 16 O -0.412 6.412 17 C -0.018 4.018 18 C -0.148 4.148 19 C -0.055 4.055 20 C -0.101 4.101 21 N -0.212 5.212 22 C -0.003 4.003 23 N -0.202 5.202 24 H 0.272 0.728 25 C -0.004 4.004 26 N -0.160 5.160 27 C -0.006 4.006 28 C -0.144 4.144 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.120 -19.283 -13.314 23.986 hybrid contribution 0.438 1.242 -0.266 1.343 sum 5.557 -18.042 -13.579 23.255 Atomic orbital electron populations 1.70025 1.05240 1.25612 1.53743 1.25033 0.95249 0.98382 1.00916 0.86390 0.78940 0.83445 0.78109 1.21083 1.21666 1.20920 1.19141 0.92763 0.84963 1.41396 0.91824 1.44010 1.37075 1.01444 1.48729 1.20780 0.88759 0.98616 0.87327 1.22055 1.00128 0.93948 1.00148 1.21702 0.96005 0.94490 0.95894 1.23169 0.97120 0.80242 1.00186 1.49431 1.47681 1.03577 1.34473 1.17170 0.81082 0.79998 0.83471 1.90808 1.43704 1.74696 1.32034 1.20914 0.95714 0.92372 0.92830 1.21588 0.99995 0.92397 1.00854 1.20458 0.92974 1.01015 0.91065 1.19893 1.00520 0.91360 0.98316 1.70459 1.13530 1.30601 1.06650 1.25570 0.97304 0.78529 0.98851 1.42896 1.39505 1.11521 1.26274 0.72793 1.18936 0.97185 0.91655 0.92648 1.66393 1.06420 1.39352 1.03850 1.23145 0.98727 0.85525 0.93186 1.21696 0.95773 0.99258 0.97654 1.20888 0.97590 0.86887 0.92596 0.93579 0.89219 0.96315 0.91952 0.92849 0.89627 0.90048 0.82421 0.83289 0.75689 0.89914 0.90240 0.93090 0.91835 0.92693 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.21 55.49 0.62 -24.98 16 2 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 3 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.77 9.56 -15.06 -0.14 -6.91 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.23 2.96 -172.18 -0.51 -14.74 16 10 C 0.17 3.83 5.27 -3.65 -0.02 3.81 16 11 C -0.12 -2.11 5.31 -26.78 -0.14 -2.26 16 12 C -0.08 -1.25 0.83 -155.17 -0.13 -1.38 16 13 C 0.11 1.80 7.56 -8.23 -0.06 1.73 16 14 N -0.62 -9.40 3.46 -186.43 -0.65 -10.05 16 15 C 0.60 9.42 8.05 -12.27 -0.10 9.32 16 16 O -0.54 -9.77 17.06 5.33 0.09 -9.68 16 17 C 0.13 1.76 6.74 -82.97 -0.56 1.20 16 18 C -0.12 -1.40 9.55 -39.48 -0.38 -1.78 16 19 C -0.03 -0.28 10.16 -39.41 -0.40 -0.68 16 20 C 0.02 0.23 7.25 -84.57 -0.61 -0.39 16 21 N -0.49 -4.84 11.27 -11.93 -0.13 -4.97 16 22 C 0.29 1.67 12.96 -89.73 -1.16 0.51 16 23 N -0.59 -4.02 6.22 -13.20 -0.08 -4.10 16 24 H 0.43 1.71 8.96 -40.82 -0.37 1.34 16 25 C 0.23 2.57 8.46 -155.73 -1.32 1.25 16 26 N -0.44 -5.63 8.02 -8.82 -0.07 -5.70 16 27 C 0.12 1.58 6.60 -8.39 -0.06 1.52 16 28 C -0.10 -1.78 5.26 -26.77 -0.14 -1.92 16 29 C 0.15 3.02 6.41 -3.65 -0.02 3.00 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.09 1.25 8.06 -51.92 -0.42 0.83 16 36 H 0.08 1.39 7.53 -51.93 -0.39 1.00 16 37 H 0.16 1.60 7.61 -52.49 -0.40 1.20 16 38 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.23 0.10 8.06 -52.49 -0.42 -0.32 16 40 H 0.08 1.10 7.12 -51.93 -0.37 0.73 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.05 0.84 7.95 -51.93 -0.41 0.43 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.13 7.92 -51.93 -0.41 0.71 16 45 H 0.02 0.40 7.60 -51.93 -0.39 0.00 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -34.09 367.63 -11.53 -45.61 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.98 Total: -0.20 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -5.33 Total: 7.03 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.82 Total: -64.55 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.09 -11.53 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050556444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.447 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds