Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48505 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47358 * 300.00162 * 3 2 1 6 6 H 1.48507 * 109.47280 * 60.00109 * 3 2 1 7 7 C 1.38806 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00522 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.64642 * 0.04290 * 9 7 2 11 11 C 1.54324 * 107.26852 * 181.02345 * 10 9 7 12 12 C 1.55151 * 102.94648 * 22.19512 * 11 10 9 13 13 H 1.08997 * 111.04275 * 82.58172 * 12 11 10 14 14 C 1.50705 * 111.00523 * 206.42680 * 12 11 10 15 15 N 1.30833 * 125.90164 * 53.66549 * 14 12 11 16 16 N 1.40082 * 108.20880 * 179.97438 * 15 14 12 17 17 H 0.96992 * 126.04077 * 180.02562 * 16 15 14 18 18 C 1.34951 * 107.92135 * 359.76176 * 16 15 14 19 19 C 1.35315 * 107.74882 * 0.38644 * 18 16 15 20 20 C 1.50698 * 126.04056 * 179.87215 * 19 18 16 21 21 N 1.46505 * 109.47131 * 259.69106 * 20 19 18 22 22 C 1.34777 * 119.99724 * 180.02562 * 21 20 19 23 23 O 1.21553 * 120.00290 * 359.97438 * 22 21 20 24 24 C 1.47840 * 119.99500 * 179.72331 * 22 21 20 25 25 C 1.40026 * 120.55644 * 180.27130 * 24 22 21 26 26 C 1.38356 * 118.29085 * 179.97438 * 25 24 22 27 27 C 1.38358 * 119.29870 * 0.02562 * 26 25 24 28 28 N 1.31925 * 121.08014 * 0.02562 * 27 26 25 29 29 C 1.31686 * 121.88130 * 359.71858 * 28 27 26 30 30 C 1.47431 * 125.64996 * 180.02562 * 9 7 2 31 31 H 0.97004 * 120.00384 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88248 * 300.43766 * 10 9 7 33 33 H 1.09003 * 109.88464 * 61.45376 * 10 9 7 34 34 H 1.09001 * 110.72123 * 263.82707 * 11 10 9 35 35 H 1.09007 * 110.71975 * 140.55747 * 11 10 9 36 36 H 1.08003 * 126.12828 * 180.23553 * 18 16 15 37 37 H 1.09003 * 109.47039 * 139.69668 * 20 19 18 38 38 H 1.08993 * 109.47358 * 19.69350 * 20 19 18 39 39 H 0.97000 * 119.99792 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.85553 * 359.96081 * 25 24 22 41 41 H 1.07996 * 120.35516 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.45978 * 179.97438 * 27 26 25 43 43 H 1.07998 * 119.72037 * 180.29079 * 29 28 27 44 44 H 1.09000 * 110.36508 * 37.06658 * 30 9 7 45 45 H 1.09003 * 110.45421 * 274.79608 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4485 -4.0440 0.0256 12 6 0.8517 -4.6562 0.6105 13 1 0.8569 -4.5970 1.6988 14 6 1.0341 -6.0791 0.1488 15 7 1.0285 -6.4893 -1.0936 16 7 1.2301 -7.8755 -1.0978 17 1 1.2720 -8.4437 -1.8828 18 6 1.3617 -8.2799 0.1829 19 6 1.2390 -7.1893 0.9745 20 6 1.3161 -7.1729 2.4794 21 7 -0.0378 -7.1256 3.0373 22 6 -0.2158 -7.1031 4.3730 23 8 0.7469 -7.1226 5.1149 24 6 -1.5818 -7.0492 4.9358 25 6 -1.7802 -7.0197 6.3216 26 6 -3.0784 -6.9690 6.7973 27 6 -4.1290 -6.9496 5.8973 28 7 -3.9119 -6.9793 4.5963 29 6 -2.6950 -7.0229 4.0951 30 6 1.9334 -3.7312 -0.0005 31 1 -0.4851 0.8400 0.0004 32 1 -0.5578 -2.0523 0.8827 33 1 -0.5545 -2.0818 -0.9015 34 1 -0.6315 -4.4178 -0.9818 35 1 -1.2987 -4.2516 0.6754 36 1 1.5318 -9.2929 0.5165 37 1 1.8740 -6.2950 2.8051 38 1 1.8211 -8.0740 2.8273 39 1 -0.8060 -7.1097 2.4452 40 1 -0.9414 -7.0365 7.0017 41 1 -3.2697 -6.9446 7.8599 42 1 -5.1435 -6.9104 6.2657 43 1 -2.5574 -7.0415 3.0241 44 1 2.8326 -3.7405 0.6154 45 1 2.1682 -4.0430 -1.0183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070388477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 105.269317 kcal Electronic energy + Delta-G solvation = -28903.355910 eV Core-core repulsion = 24923.301137 eV Total energy + Delta-G solvation = -3980.054773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40579 -40.72386 -39.04587 -37.28752 -35.19725 -33.10177 -32.79892 -32.16136 -31.21272 -30.44683 -29.09329 -27.49450 -26.29598 -24.61476 -24.28599 -23.65424 -22.10726 -20.86818 -20.34595 -19.98201 -18.83881 -18.56181 -17.71597 -17.09025 -16.75963 -16.58677 -15.55690 -15.46556 -15.06400 -14.88879 -14.52046 -14.43704 -14.26766 -13.97390 -13.72607 -13.53548 -13.39540 -12.89930 -12.62490 -12.45310 -12.30910 -12.17541 -11.81879 -11.69171 -10.94200 -10.80845 -10.78827 -10.60161 -10.46680 -10.22331 -10.06426 -9.92605 -9.73176 -9.72067 -9.61091 -9.55567 -9.16559 -9.13910 -8.67742 -8.53321 -6.75695 -5.64771 -2.97705 0.36942 0.90984 1.78433 2.52483 2.69440 2.83573 3.26523 3.44546 3.49951 3.52429 3.60369 3.99752 4.45315 4.52190 4.53483 4.60747 4.63261 4.68343 4.72954 5.06334 5.09117 5.22871 5.27350 5.41322 5.50320 5.58437 5.66584 5.71382 5.79987 5.81794 5.91960 5.95438 6.03658 6.21176 6.28165 6.41054 6.50194 6.57898 6.69538 6.75093 6.98820 7.22836 7.33789 7.54708 7.63057 7.70455 7.74339 7.89688 8.02374 8.32464 9.28808 9.89013 10.55312 11.47048 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.003205 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.062703 B = 8733.031214 C =10623.412172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.032 4.032 13 H 0.091 0.909 14 C 0.122 3.878 15 N -0.281 5.281 16 N -0.480 5.480 17 H 0.439 0.561 18 C 0.077 3.923 19 C -0.264 4.264 20 C 0.202 3.798 21 N -0.716 5.716 22 C 0.563 3.437 23 O -0.536 6.536 24 C -0.185 4.185 25 C -0.017 4.017 26 C -0.181 4.181 27 C 0.119 3.881 28 N -0.487 5.487 29 C 0.137 3.863 30 C 0.150 3.850 31 H 0.251 0.749 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.038 0.962 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 -22.183 8.244 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.054 4.054 13 H 0.109 0.891 14 C -0.046 4.046 15 N -0.102 5.102 16 N -0.186 5.186 17 H 0.282 0.718 18 C -0.072 4.072 19 C -0.277 4.277 20 C 0.079 3.921 21 N -0.367 5.367 22 C 0.349 3.651 23 O -0.414 6.414 24 C -0.190 4.190 25 C -0.044 4.044 26 C -0.200 4.200 27 C -0.037 4.037 28 N -0.195 5.195 29 C -0.022 4.022 30 C 0.023 3.977 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.056 0.944 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.325 -21.615 6.954 23.322 hybrid contribution 0.882 0.250 0.634 1.114 sum -4.443 -21.365 7.587 23.104 Atomic orbital electron populations 1.69975 1.04846 1.24800 1.57344 1.24785 0.95715 0.97598 1.02412 0.86054 0.78735 0.83868 0.77182 1.20526 1.21821 1.21796 1.19107 0.90473 0.82371 1.43384 0.90412 1.44470 1.01727 0.99787 1.87099 1.21149 0.84339 0.88066 1.01109 1.22930 0.94918 0.99292 0.99824 1.20949 0.98916 0.85562 0.99962 0.89100 1.22286 0.96238 0.96334 0.89730 1.77501 1.24165 0.88112 1.20455 1.46365 1.57773 1.07439 1.07015 0.71774 1.22368 1.00236 0.99617 0.84989 1.19925 1.19421 0.92615 0.95714 1.19429 0.82807 1.02856 0.87017 1.46090 1.09949 1.74546 1.06132 1.18008 0.88110 0.76626 0.82376 1.90787 1.41641 1.49923 1.59059 1.21044 0.94725 1.07693 0.95532 1.21762 0.97954 0.90384 0.94280 1.22187 0.93103 1.02835 1.01913 1.23035 0.99952 0.92217 0.88498 1.67717 1.23979 1.12502 1.15295 1.23014 0.87059 0.91945 1.00158 1.21515 0.93563 0.85561 0.97097 0.93879 0.93588 0.93828 0.91832 0.92336 0.80786 0.90092 0.90792 0.76373 0.83452 0.83975 0.82202 0.82421 0.94381 0.95708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 2 C -0.01 -0.26 5.49 -17.44 -0.10 -0.36 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.22 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.88 3.39 -170.08 -0.58 -16.46 16 10 C 0.18 4.42 5.38 -3.07 -0.02 4.40 16 11 C -0.13 -2.50 6.41 -24.90 -0.16 -2.66 16 12 C -0.03 -0.58 3.45 -89.63 -0.31 -0.89 16 13 H 0.09 1.60 7.33 -51.93 -0.38 1.22 16 14 C 0.12 1.83 5.89 -82.40 -0.49 1.34 16 15 N -0.28 -4.22 12.38 33.67 0.42 -3.81 16 16 N -0.48 -4.87 7.36 30.45 0.22 -4.64 16 17 H 0.44 2.93 8.96 -182.62 -1.64 1.30 16 18 C 0.08 0.69 11.90 -17.22 -0.20 0.48 16 19 C -0.26 -3.05 5.47 -105.05 -0.57 -3.62 16 20 C 0.20 2.25 5.65 -5.19 -0.03 2.22 16 21 N -0.72 -7.58 5.50 -62.43 -0.34 -7.93 16 22 C 0.56 6.91 7.78 -12.33 -0.10 6.82 16 23 O -0.54 -8.28 16.42 5.32 0.09 -8.19 16 24 C -0.18 -1.98 5.89 -104.82 -0.62 -2.60 16 25 C -0.02 -0.16 9.72 -38.87 -0.38 -0.54 16 26 C -0.18 -1.35 10.10 -39.49 -0.40 -1.75 16 27 C 0.12 0.98 11.17 -17.47 -0.20 0.79 16 28 N -0.49 -5.14 10.35 -12.91 -0.13 -5.28 16 29 C 0.14 1.37 10.71 -17.14 -0.18 1.19 16 30 C 0.15 3.24 6.69 -2.54 -0.02 3.23 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 33 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 34 H 0.06 1.22 7.85 -51.93 -0.41 0.81 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.08 1.06 7.77 -51.93 -0.40 0.65 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 3.65 6.53 -40.82 -0.27 3.38 16 40 H 0.15 1.33 7.74 -52.49 -0.41 0.92 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.16 1.27 6.42 -52.49 -0.34 0.94 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.56 7.94 -51.93 -0.41 0.15 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -36.45 378.70 -10.09 -46.54 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.11 Total: 2.03 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.92 Total: 1.47 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.16 Total: -65.09 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.45 -10.09 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070388477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.807 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds