Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00233 * 2 1 4 4 H 1.48500 * 109.47257 * 270.00227 * 3 2 1 5 5 H 1.48505 * 109.46680 * 30.00091 * 3 2 1 6 6 H 1.48497 * 109.47442 * 149.99846 * 3 2 1 7 7 C 1.38820 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64669 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.26993 * 178.95835 * 10 9 7 12 12 C 1.55154 * 102.94463 * 337.80753 * 11 10 9 13 13 H 1.09002 * 111.00140 * 277.39277 * 12 11 10 14 14 C 1.50697 * 111.00646 * 153.57642 * 12 11 10 15 15 N 1.30832 * 125.89900 * 299.97256 * 14 12 11 16 16 N 1.40085 * 108.20599 * 180.02562 * 15 14 12 17 17 H 0.97009 * 126.03785 * 179.74030 * 16 15 14 18 18 C 1.34943 * 107.92716 * 0.02562 * 16 15 14 19 19 C 1.35316 * 107.74531 * 359.97438 * 18 16 15 20 20 C 1.50700 * 126.04188 * 180.02562 * 19 18 16 21 21 N 1.46498 * 109.47103 * 259.97768 * 20 19 18 22 22 C 1.34781 * 119.99648 * 179.97438 * 21 20 19 23 23 O 1.21547 * 120.00465 * 359.97438 * 22 21 20 24 24 C 1.47840 * 119.99761 * 179.97438 * 22 21 20 25 25 C 1.40022 * 120.56080 * 179.72315 * 24 22 21 26 26 C 1.38359 * 118.28994 * 179.73270 * 25 24 22 27 27 C 1.38353 * 119.30300 * 0.54137 * 26 25 24 28 28 N 1.31929 * 121.07666 * 359.71874 * 27 26 25 29 29 C 1.31693 * 121.88129 * 0.02562 * 28 27 26 30 30 C 1.47422 * 125.65042 * 180.02562 * 9 7 2 31 31 H 0.96998 * 119.99819 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.88705 * 59.54154 * 10 9 7 33 33 H 1.09002 * 109.88554 * 298.37381 * 10 9 7 34 34 H 1.09005 * 110.72021 * 219.44012 * 11 10 9 35 35 H 1.09003 * 110.87595 * 96.23940 * 11 10 9 36 36 H 1.07996 * 126.13000 * 180.02562 * 18 16 15 37 37 H 1.09007 * 109.47049 * 19.97813 * 20 19 18 38 38 H 1.09000 * 109.46947 * 139.97527 * 20 19 18 39 39 H 0.97001 * 120.00080 * 359.97438 * 21 20 19 40 40 H 1.08001 * 120.85442 * 359.97435 * 25 24 22 41 41 H 1.08002 * 120.34973 * 180.23617 * 26 25 24 42 42 H 1.07999 * 119.46170 * 179.74413 * 27 26 25 43 43 H 1.08003 * 119.71616 * 179.97438 * 29 28 27 44 44 H 1.08997 * 110.36686 * 85.27032 * 30 9 7 45 45 H 1.09006 * 110.36065 * 322.94491 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0267 12 6 0.8514 -4.6559 -0.6126 13 1 0.8553 -4.5961 -1.7010 14 6 1.0341 -6.0790 -0.1520 15 7 1.1458 -6.4751 1.0899 16 7 1.3005 -7.8673 1.0931 17 1 1.4091 -8.4277 1.8775 18 6 1.2783 -8.2907 -0.1880 19 6 1.1143 -7.2047 -0.9784 20 6 1.0325 -7.2075 -2.4832 21 7 2.3293 -6.8193 -3.0435 22 6 2.4934 -6.7529 -4.3796 23 8 1.5656 -7.0155 -5.1197 24 6 3.8018 -6.3607 -4.9450 25 6 3.9870 -6.2935 -6.3313 26 6 5.2292 -5.9157 -6.8094 27 6 6.2422 -5.6302 -5.9113 28 7 6.0403 -5.7073 -4.6099 29 6 4.8748 -6.0572 -4.1064 30 6 1.9334 -3.7312 -0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5583 -2.0518 -0.8825 33 1 -0.5537 -2.0849 0.9029 34 1 -1.2990 -4.2512 -0.6762 35 1 -0.6325 -4.4210 0.9794 36 1 1.3733 -9.3131 -0.5225 37 1 0.7709 -8.2069 -2.8310 38 1 0.2701 -6.4989 -2.8069 39 1 3.0698 -6.6101 -2.4529 40 1 3.1798 -6.5267 -7.0099 41 1 5.4077 -5.8492 -7.8725 42 1 7.2141 -5.3392 -6.2817 43 1 4.7483 -6.1094 -3.0351 44 1 2.1666 -4.0421 1.0178 45 1 2.8328 -3.7405 -0.6163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070388478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 105.302388 kcal Electronic energy + Delta-G solvation = -29007.774644 eV Core-core repulsion = 25027.721304 eV Total energy + Delta-G solvation = -3980.053339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40364 -40.69265 -39.02268 -37.28585 -35.18303 -33.09963 -32.76445 -32.13288 -31.20951 -30.43343 -29.09971 -27.48730 -26.28066 -24.61989 -24.25740 -23.62201 -22.10350 -20.84433 -20.33688 -19.98067 -18.83210 -18.54991 -17.70140 -17.05756 -16.76174 -16.56285 -15.54538 -15.44700 -15.03656 -14.88513 -14.51329 -14.43522 -14.25424 -13.95688 -13.70340 -13.53391 -13.36325 -12.88776 -12.61578 -12.42163 -12.31734 -12.17825 -11.80738 -11.68851 -10.94309 -10.80143 -10.77447 -10.61379 -10.44505 -10.18882 -10.08898 -9.93213 -9.73701 -9.68776 -9.60091 -9.52148 -9.14728 -9.13467 -8.67491 -8.53041 -6.75883 -5.64743 -2.97761 0.40473 0.94682 1.78597 2.53160 2.71974 2.83588 3.28396 3.44683 3.49511 3.51447 3.63830 4.03847 4.48738 4.53176 4.55728 4.62122 4.65092 4.68520 4.75856 5.06847 5.12139 5.23663 5.30267 5.41675 5.50616 5.57419 5.66938 5.74377 5.81263 5.83057 5.92032 5.95453 6.03960 6.24067 6.30491 6.42110 6.49599 6.59548 6.67901 6.74546 6.99018 7.22892 7.35719 7.58976 7.62679 7.70960 7.74522 7.89509 8.04136 8.32400 9.28628 9.88927 10.55311 11.47033 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007582 B = 0.003769 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.201989 B = 7426.383770 C =10025.514634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.131 4.131 12 C -0.033 4.033 13 H 0.091 0.909 14 C 0.122 3.878 15 N -0.280 5.280 16 N -0.480 5.480 17 H 0.439 0.561 18 C 0.077 3.923 19 C -0.265 4.265 20 C 0.203 3.797 21 N -0.716 5.716 22 C 0.564 3.436 23 O -0.538 6.538 24 C -0.185 4.185 25 C -0.017 4.017 26 C -0.181 4.181 27 C 0.120 3.880 28 N -0.486 5.486 29 C 0.138 3.862 30 C 0.151 3.849 31 H 0.251 0.749 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.175 0.825 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.401 0.599 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.027 0.973 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -20.610 -8.226 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.170 4.170 12 C -0.054 4.054 13 H 0.109 0.891 14 C -0.046 4.046 15 N -0.102 5.102 16 N -0.186 5.186 17 H 0.282 0.718 18 C -0.072 4.072 19 C -0.277 4.277 20 C 0.080 3.920 21 N -0.367 5.367 22 C 0.350 3.650 23 O -0.416 6.416 24 C -0.190 4.190 25 C -0.044 4.044 26 C -0.201 4.201 27 C -0.037 4.037 28 N -0.195 5.195 29 C -0.021 4.021 30 C 0.024 3.976 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.192 0.808 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.237 0.763 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.045 0.955 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.995 -20.018 -6.925 22.307 hybrid contribution 0.123 0.159 -0.640 0.671 sum 7.118 -19.858 -7.565 22.411 Atomic orbital electron populations 1.69965 1.04852 1.24925 1.57200 1.24783 0.95694 0.97577 1.02368 0.86139 0.78604 0.83623 0.77538 1.21646 1.21709 1.20718 1.19051 0.90414 0.82385 1.43594 0.90487 1.44458 1.01722 0.99785 1.87124 1.21150 0.84330 0.88033 1.01103 1.22939 0.95062 0.99230 0.99809 1.20966 0.98954 0.85557 0.99965 0.89103 1.22289 0.96226 0.96347 0.89741 1.77510 1.24207 0.88018 1.20480 1.46372 1.58304 1.06904 1.07015 0.71770 1.22365 1.00181 0.99673 0.84991 1.19929 1.19603 0.92451 0.95727 1.19417 0.84709 1.00941 0.86977 1.46093 1.15016 1.69460 1.06158 1.18002 0.87225 0.77433 0.82351 1.90778 1.41933 1.49633 1.59207 1.21034 0.95668 1.06808 0.95522 1.21751 0.97330 0.91072 0.94242 1.22182 0.93905 1.02117 1.01893 1.23036 0.99335 0.92779 0.88517 1.67723 1.23462 1.13065 1.15204 1.23027 0.87441 0.91397 1.00192 1.21521 0.93403 0.85613 0.97105 0.93815 0.93506 0.93859 0.92154 0.91995 0.80786 0.90816 0.90196 0.76297 0.83480 0.83994 0.82212 0.82402 0.95548 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.80 3.39 -170.06 -0.58 -16.38 16 10 C 0.18 4.45 5.37 -3.07 -0.02 4.44 16 11 C -0.13 -2.57 6.41 -24.90 -0.16 -2.73 16 12 C -0.03 -0.59 3.45 -89.61 -0.31 -0.90 16 13 H 0.09 1.60 7.36 -51.93 -0.38 1.22 16 14 C 0.12 1.83 5.89 -82.41 -0.49 1.34 16 15 N -0.28 -4.23 12.37 33.67 0.42 -3.82 16 16 N -0.48 -4.87 7.36 30.44 0.22 -4.65 16 17 H 0.44 2.94 8.96 -182.60 -1.64 1.31 16 18 C 0.08 0.69 11.90 -17.23 -0.20 0.48 16 19 C -0.26 -3.05 5.47 -105.05 -0.57 -3.63 16 20 C 0.20 2.25 5.64 -5.19 -0.03 2.23 16 21 N -0.72 -7.82 5.50 -62.43 -0.34 -8.16 16 22 C 0.56 7.10 7.78 -12.33 -0.10 7.00 16 23 O -0.54 -8.36 16.42 5.32 0.09 -8.27 16 24 C -0.19 -2.07 5.89 -104.82 -0.62 -2.69 16 25 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 26 C -0.18 -1.44 10.10 -39.49 -0.40 -1.84 16 27 C 0.12 1.06 11.17 -17.47 -0.20 0.86 16 28 N -0.49 -5.49 10.35 -12.91 -0.13 -5.62 16 29 C 0.14 1.48 10.71 -17.13 -0.18 1.30 16 30 C 0.15 3.20 6.69 -2.52 -0.02 3.19 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.05 1.28 7.38 -51.93 -0.38 0.89 16 33 H 0.04 1.20 7.51 -51.93 -0.39 0.81 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.21 7.98 -51.93 -0.41 0.80 16 36 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.08 1.02 7.80 -51.93 -0.41 0.62 16 39 H 0.40 3.87 6.53 -40.82 -0.27 3.61 16 40 H 0.15 1.36 7.74 -52.49 -0.41 0.96 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.16 1.41 6.42 -52.48 -0.34 1.07 16 44 H 0.03 0.59 7.80 -51.93 -0.41 0.18 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -36.35 378.76 -10.09 -46.45 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.11 Total: 2.64 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.92 Total: 1.58 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.16 Total: -65.60 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.35 -10.09 -46.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070388478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.748 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds