Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48501 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46723 * 299.99848 * 3 2 1 6 6 H 1.48499 * 109.47140 * 59.99627 * 3 2 1 7 7 C 1.38811 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00559 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64258 * 0.02875 * 9 7 2 11 11 C 1.54321 * 107.26791 * 181.03445 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 C 1.50700 * 111.11612 * 206.45980 * 12 11 10 15 15 N 1.30840 * 125.89493 * 53.25676 * 14 12 11 16 16 N 1.40092 * 108.20060 * 179.84624 * 15 14 12 17 17 H 0.96997 * 126.03130 * 180.16376 * 16 15 14 18 18 C 1.34944 * 107.92398 * 0.41338 * 16 15 14 19 19 C 1.35318 * 107.75011 * 359.75542 * 18 16 15 20 20 C 1.50696 * 126.03736 * 180.02562 * 19 18 16 21 21 N 1.46510 * 109.46934 * 259.96948 * 20 19 18 22 22 C 1.34768 * 120.00099 * 180.02562 * 21 20 19 23 23 O 1.21520 * 120.00026 * 0.02562 * 22 21 20 24 24 C 1.48168 * 120.00405 * 179.97438 * 22 21 20 25 25 C 1.39308 * 119.72744 * 180.02562 * 24 22 21 26 26 C 1.38586 * 119.05905 * 179.97438 * 25 24 22 27 27 C 1.38631 * 118.49075 * 359.97438 * 26 25 24 28 28 C 1.38561 * 119.34702 * 0.02562 * 27 26 25 29 29 N 1.31522 * 120.90776 * 359.74356 * 28 27 26 30 30 C 1.47419 * 125.65165 * 179.97438 * 9 7 2 31 31 H 0.97004 * 120.00521 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.88266 * 300.44821 * 10 9 7 33 33 H 1.08997 * 109.88244 * 61.46178 * 10 9 7 34 34 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 35 35 H 1.08997 * 110.72400 * 263.82847 * 11 10 9 36 36 H 1.08006 * 126.12151 * 179.78775 * 18 16 15 37 37 H 1.08995 * 109.47447 * 19.97137 * 20 19 18 38 38 H 1.09002 * 109.46998 * 139.97582 * 20 19 18 39 39 H 0.97000 * 119.99425 * 0.02562 * 21 20 19 40 40 H 1.08001 * 120.46782 * 359.97438 * 25 24 22 41 41 H 1.07996 * 120.75677 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.32620 * 180.02562 * 27 26 25 43 43 H 1.08004 * 119.54010 * 179.97438 * 28 27 26 44 44 H 1.09002 * 110.36926 * 274.73635 * 30 9 7 45 45 H 1.08995 * 110.36556 * 36.94919 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0017 11 6 -0.4485 -4.0441 0.0296 12 6 0.8540 -4.6574 0.6158 13 1 0.8595 -4.5962 1.7041 14 6 1.0387 -6.0807 0.1561 15 7 1.0269 -6.4934 -1.0854 16 7 1.2364 -7.8786 -1.0880 17 1 1.2780 -8.4479 -1.8723 18 6 1.3646 -8.2816 0.1934 19 6 1.2463 -7.1893 0.9833 20 6 1.3250 -7.1706 2.4880 21 7 -0.0284 -7.1246 3.0473 22 6 -0.2051 -7.1005 4.3831 23 8 0.7581 -7.1164 5.1238 24 6 -1.5738 -7.0535 4.9487 25 6 -1.7497 -7.0283 6.3304 26 6 -3.0360 -6.9838 6.8444 27 6 -4.1020 -6.9656 5.9584 28 6 -3.8528 -6.9927 4.5956 29 7 -2.6217 -7.0303 4.1345 30 6 1.9334 -3.7312 0.0017 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5576 -2.0515 0.8848 33 1 -0.5546 -2.0828 -0.8992 34 1 -1.2985 -4.2510 0.6798 35 1 -0.6317 -4.4189 -0.9773 36 1 1.5323 -9.2946 0.5285 37 1 1.8318 -8.0703 2.8366 38 1 1.8819 -6.2913 2.8118 39 1 -0.7972 -7.1116 2.4560 40 1 -0.8959 -7.0431 6.9915 41 1 -3.2040 -6.9629 7.9110 42 1 -5.1166 -6.9306 6.3266 43 1 -4.6810 -6.9790 3.9025 44 1 2.1659 -4.0425 -1.0167 45 1 2.8342 -3.7397 0.6153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070391894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 105.223348 kcal Electronic energy + Delta-G solvation = -28884.571067 eV Core-core repulsion = 24904.514300 eV Total energy + Delta-G solvation = -3980.056767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.32329 -40.68001 -38.92051 -37.22132 -35.07780 -33.09342 -32.86012 -31.79012 -31.20193 -30.49694 -29.03978 -27.44666 -26.30783 -24.57113 -24.23650 -23.63623 -22.04842 -20.81216 -20.28147 -19.93403 -18.77748 -18.52072 -17.60933 -16.95549 -16.72198 -16.20182 -15.55362 -15.46655 -15.04967 -14.85014 -14.48852 -14.40249 -14.22523 -13.88815 -13.85638 -13.45004 -13.39558 -12.79579 -12.50668 -12.25527 -12.24381 -12.12584 -11.76587 -11.64115 -10.90135 -10.77000 -10.74672 -10.53648 -10.46424 -10.26138 -10.03177 -9.88825 -9.78322 -9.67511 -9.57271 -9.49302 -9.07883 -9.02505 -8.60080 -8.50269 -6.72434 -5.62045 -2.94795 0.42157 0.93770 1.85842 2.60521 2.64788 2.90365 3.31567 3.46167 3.51449 3.54038 3.68876 3.98727 4.51779 4.56429 4.61013 4.70296 4.70631 4.74641 4.78537 5.12455 5.16992 5.30271 5.43593 5.47497 5.55385 5.62356 5.67212 5.75688 5.82349 5.87625 5.98660 6.01088 6.10770 6.28243 6.40153 6.47518 6.56039 6.64581 6.74989 6.80850 7.04061 7.29605 7.34807 7.63875 7.66218 7.74725 7.81097 7.92862 8.14223 8.35429 9.31608 9.91901 10.58653 11.49780 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.003204 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.643956 B = 8737.143023 C =10622.808062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.130 4.130 12 C -0.032 4.032 13 H 0.090 0.910 14 C 0.124 3.876 15 N -0.282 5.282 16 N -0.481 5.481 17 H 0.438 0.562 18 C 0.077 3.923 19 C -0.262 4.262 20 C 0.200 3.800 21 N -0.701 5.701 22 C 0.569 3.431 23 O -0.537 6.537 24 C 0.082 3.918 25 C -0.113 4.113 26 C -0.083 4.083 27 C -0.153 4.153 28 C 0.099 3.901 29 N -0.457 5.457 30 C 0.150 3.850 31 H 0.250 0.750 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.175 0.825 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.412 0.588 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.163 0.837 44 H 0.025 0.975 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -22.192 8.907 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.169 4.169 12 C -0.053 4.053 13 H 0.109 0.891 14 C -0.044 4.044 15 N -0.104 5.104 16 N -0.187 5.187 17 H 0.282 0.718 18 C -0.073 4.073 19 C -0.274 4.274 20 C 0.076 3.924 21 N -0.351 5.351 22 C 0.353 3.647 23 O -0.414 6.414 24 C -0.057 4.057 25 C -0.134 4.134 26 C -0.109 4.109 27 C -0.173 4.173 28 C -0.061 4.061 29 N -0.168 5.168 30 C 0.023 3.977 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.192 0.808 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.249 0.751 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.180 0.820 44 H 0.043 0.957 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.287 -21.647 7.272 23.685 hybrid contribution -0.107 0.276 1.007 1.050 sum -6.394 -21.370 8.279 23.793 Atomic orbital electron populations 1.69983 1.04840 1.24739 1.57440 1.24788 0.95713 0.97579 1.02493 0.86052 0.78738 0.83897 0.77155 1.20529 1.21847 1.21821 1.19115 0.90472 0.82390 1.43245 0.90419 1.44475 1.01756 0.99796 1.87074 1.21144 0.84309 0.88135 1.01034 1.22968 0.94999 0.99129 0.99787 1.20984 0.98848 0.85557 0.99945 0.89142 1.22257 0.96128 0.96324 0.89727 1.77490 1.24182 0.88179 1.20500 1.46343 1.57854 1.07504 1.06959 0.71833 1.22348 1.00374 0.99560 0.84974 1.19912 1.19202 0.92583 0.95713 1.19462 0.83063 1.02765 0.87098 1.46020 1.10103 1.72776 1.06252 1.17866 0.87089 0.77017 0.82690 1.90789 1.40606 1.50538 1.59445 1.21212 0.93077 1.00310 0.91073 1.22152 0.98757 0.96982 0.95483 1.21641 0.92062 0.96289 1.00886 1.22395 1.00581 0.99477 0.94822 1.22830 0.93834 0.95351 0.94059 1.67574 0.99405 1.09985 1.39856 1.21519 0.93587 0.85562 0.97071 0.93921 0.93633 0.93867 0.92256 0.91899 0.80827 0.90831 0.90125 0.75143 0.83384 0.84097 0.84243 0.81979 0.95713 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.84 10.31 55.49 0.57 -27.27 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.22 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 N -0.60 -16.19 3.39 -170.07 -0.58 -16.77 16 10 C 0.18 4.54 5.38 -3.06 -0.02 4.52 16 11 C -0.13 -2.60 6.42 -24.74 -0.16 -2.76 16 12 C -0.03 -0.60 3.46 -89.46 -0.31 -0.91 16 13 H 0.09 1.70 7.34 -51.93 -0.38 1.31 16 14 C 0.12 1.98 5.90 -82.41 -0.49 1.49 16 15 N -0.28 -4.47 12.39 33.67 0.42 -4.06 16 16 N -0.48 -5.26 7.36 30.45 0.22 -5.04 16 17 H 0.44 3.23 8.96 -182.61 -1.64 1.59 16 18 C 0.08 0.76 11.90 -17.22 -0.20 0.55 16 19 C -0.26 -3.32 5.47 -105.06 -0.57 -3.89 16 20 C 0.20 2.46 5.65 -5.19 -0.03 2.43 16 21 N -0.70 -8.83 5.54 -62.32 -0.35 -9.18 16 22 C 0.57 7.88 7.81 -12.19 -0.10 7.78 16 23 O -0.54 -8.71 16.32 5.35 0.09 -8.62 16 24 C 0.08 1.00 6.75 -83.01 -0.56 0.44 16 25 C -0.11 -1.15 9.63 -39.06 -0.38 -1.52 16 26 C -0.08 -0.62 10.17 -39.31 -0.40 -1.02 16 27 C -0.15 -1.05 10.12 -39.32 -0.40 -1.45 16 28 C 0.10 0.85 11.18 -17.56 -0.20 0.65 16 29 N -0.46 -5.22 9.54 -9.80 -0.09 -5.31 16 30 C 0.15 3.33 6.68 -2.52 -0.02 3.32 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.05 1.26 7.38 -51.93 -0.38 0.88 16 33 H 0.04 1.21 7.50 -51.93 -0.39 0.82 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.26 7.85 -51.93 -0.41 0.85 16 36 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.13 7.78 -51.93 -0.40 0.73 16 39 H 0.41 5.07 7.79 -40.82 -0.32 4.75 16 40 H 0.15 1.43 7.64 -52.49 -0.40 1.03 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.03 0.58 7.95 -51.93 -0.41 0.16 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -36.27 380.99 -10.31 -46.58 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.24 Total: 3.57 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -4.07 Total: 2.61 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: 0.20 Total: -67.61 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.27 -10.31 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070391894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.805 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds