Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48501 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46723 * 299.99848 * 3 2 1 6 6 H 1.48499 * 109.47140 * 59.99627 * 3 2 1 7 7 C 1.38811 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00559 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64258 * 0.02875 * 9 7 2 11 11 C 1.54321 * 107.26791 * 181.03445 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 C 1.50700 * 111.11612 * 206.45980 * 12 11 10 15 15 N 1.30840 * 125.89493 * 53.25676 * 14 12 11 16 16 N 1.40092 * 108.20060 * 179.84624 * 15 14 12 17 17 H 0.96997 * 126.03130 * 180.16376 * 16 15 14 18 18 C 1.34944 * 107.92398 * 0.41338 * 16 15 14 19 19 C 1.35318 * 107.75011 * 359.75542 * 18 16 15 20 20 C 1.50696 * 126.03736 * 180.02562 * 19 18 16 21 21 N 1.46510 * 109.46934 * 259.96948 * 20 19 18 22 22 C 1.34768 * 120.00099 * 180.02562 * 21 20 19 23 23 O 1.21520 * 120.00026 * 0.02562 * 22 21 20 24 24 C 1.48168 * 120.00405 * 179.97438 * 22 21 20 25 25 C 1.39308 * 119.72744 * 180.02562 * 24 22 21 26 26 C 1.38586 * 119.05905 * 179.97438 * 25 24 22 27 27 C 1.38631 * 118.49075 * 359.97438 * 26 25 24 28 28 C 1.38561 * 119.34702 * 0.02562 * 27 26 25 29 29 N 1.31522 * 120.90776 * 359.74356 * 28 27 26 30 30 C 1.47419 * 125.65165 * 179.97438 * 9 7 2 31 31 H 0.97004 * 120.00521 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.88266 * 300.44821 * 10 9 7 33 33 H 1.08997 * 109.88244 * 61.46178 * 10 9 7 34 34 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 35 35 H 1.08997 * 110.72400 * 263.82847 * 11 10 9 36 36 H 1.08006 * 126.12151 * 179.78775 * 18 16 15 37 37 H 1.08995 * 109.47447 * 19.97137 * 20 19 18 38 38 H 1.09002 * 109.46998 * 139.97582 * 20 19 18 39 39 H 0.97000 * 119.99425 * 0.02562 * 21 20 19 40 40 H 1.08001 * 120.46782 * 359.97438 * 25 24 22 41 41 H 1.07996 * 120.75677 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.32620 * 180.02562 * 27 26 25 43 43 H 1.08004 * 119.54010 * 179.97438 * 28 27 26 44 44 H 1.09002 * 110.36926 * 274.73635 * 30 9 7 45 45 H 1.08995 * 110.36556 * 36.94919 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0017 11 6 -0.4485 -4.0441 0.0296 12 6 0.8540 -4.6574 0.6158 13 1 0.8595 -4.5962 1.7041 14 6 1.0387 -6.0807 0.1561 15 7 1.0269 -6.4934 -1.0854 16 7 1.2364 -7.8786 -1.0880 17 1 1.2780 -8.4479 -1.8723 18 6 1.3646 -8.2816 0.1934 19 6 1.2463 -7.1893 0.9833 20 6 1.3250 -7.1706 2.4880 21 7 -0.0284 -7.1246 3.0473 22 6 -0.2051 -7.1005 4.3831 23 8 0.7581 -7.1164 5.1238 24 6 -1.5738 -7.0535 4.9487 25 6 -1.7497 -7.0283 6.3304 26 6 -3.0360 -6.9838 6.8444 27 6 -4.1020 -6.9656 5.9584 28 6 -3.8528 -6.9927 4.5956 29 7 -2.6217 -7.0303 4.1345 30 6 1.9334 -3.7312 0.0017 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5576 -2.0515 0.8848 33 1 -0.5546 -2.0828 -0.8992 34 1 -1.2985 -4.2510 0.6798 35 1 -0.6317 -4.4189 -0.9773 36 1 1.5323 -9.2946 0.5285 37 1 1.8318 -8.0703 2.8366 38 1 1.8819 -6.2913 2.8118 39 1 -0.7972 -7.1116 2.4560 40 1 -0.8959 -7.0431 6.9915 41 1 -3.2040 -6.9629 7.9110 42 1 -5.1166 -6.9306 6.3266 43 1 -4.6810 -6.9790 3.9025 44 1 2.1659 -4.0425 -1.0167 45 1 2.8342 -3.7397 0.6153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070391894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = 78.777744 kcal Electronic energy + Delta-G solvation = -28885.717834 eV Core-core repulsion = 24904.514300 eV Total energy + Delta-G solvation = -3981.203534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.35975 -41.47065 -39.84137 -39.04463 -36.11086 -34.89563 -33.61558 -32.81083 -32.46981 -31.46497 -30.90302 -29.18812 -27.22414 -26.61618 -25.00868 -24.30759 -23.49793 -21.98633 -21.72034 -21.34550 -20.14586 -19.44819 -18.82479 -18.48317 -17.73174 -16.86425 -16.82185 -16.50291 -16.42761 -16.25991 -15.80950 -15.77183 -15.39996 -15.10980 -14.71700 -14.58769 -14.12662 -14.01496 -14.00125 -13.82567 -13.69435 -13.58408 -13.16286 -12.87080 -12.86394 -12.74085 -12.30774 -11.98570 -11.94549 -11.76366 -11.66472 -11.47347 -11.26269 -10.91101 -10.72096 -10.53121 -10.28632 -10.26249 -9.96742 -9.57286 -8.90877 -7.84784 -5.21115 -0.30970 0.30216 0.95370 1.44736 1.46766 1.48765 1.57499 1.75459 2.02544 2.38693 2.49956 2.92933 3.22870 3.32978 3.51688 3.71022 3.86386 3.88554 4.01148 4.03026 4.10487 4.13297 4.14903 4.16361 4.31702 4.52605 4.55526 4.63375 4.68819 4.75659 4.80990 4.84417 4.98801 5.02952 5.11259 5.13357 5.20098 5.33749 5.41549 5.43810 5.55676 5.65063 5.68317 5.74607 6.18734 6.44665 6.51109 6.76093 6.84242 7.09622 7.16066 7.75782 8.41615 9.26005 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.003204 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.643956 B = 8737.143023 C =10622.808062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.626 5.626 10 C 0.189 3.811 11 C -0.112 4.112 12 C -0.012 4.012 13 H 0.086 0.914 14 C 0.107 3.893 15 N -0.321 5.321 16 N -0.463 5.463 17 H 0.456 0.544 18 C 0.111 3.889 19 C -0.275 4.275 20 C 0.204 3.796 21 N -0.695 5.695 22 C 0.564 3.436 23 O -0.572 6.572 24 C 0.050 3.950 25 C -0.125 4.125 26 C -0.080 4.080 27 C -0.138 4.138 28 C 0.086 3.914 29 N -0.479 5.479 30 C 0.148 3.852 31 H 0.247 0.753 32 H 0.013 0.987 33 H 0.007 0.993 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.226 0.774 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.414 0.586 40 H 0.144 0.856 41 H 0.174 0.826 42 H 0.178 0.822 43 H 0.188 0.812 44 H 0.019 0.981 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 -24.579 9.590 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.064 3.936 11 C -0.151 4.151 12 C -0.033 4.033 13 H 0.105 0.895 14 C -0.061 4.061 15 N -0.144 5.144 16 N -0.171 5.171 17 H 0.303 0.697 18 C -0.040 4.040 19 C -0.287 4.287 20 C 0.080 3.920 21 N -0.345 5.345 22 C 0.350 3.650 23 O -0.452 6.452 24 C -0.087 4.087 25 C -0.146 4.146 26 C -0.106 4.106 27 C -0.157 4.157 28 C -0.074 4.074 29 N -0.191 5.191 30 C 0.022 3.978 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.025 0.975 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.251 0.749 40 H 0.162 0.838 41 H 0.191 0.809 42 H 0.195 0.805 43 H 0.205 0.795 44 H 0.037 0.963 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.992 -24.067 7.919 26.284 hybrid contribution 0.051 0.929 0.770 1.208 sum -6.941 -23.138 8.690 25.672 Atomic orbital electron populations 1.70207 1.06322 1.25230 1.58240 1.25685 0.96686 1.01062 1.02467 0.84970 0.78128 0.79183 0.76804 1.19020 1.21743 1.21669 1.19511 0.91006 0.83684 1.43122 0.90082 1.44784 1.02492 1.00977 1.86976 1.20878 0.83729 0.91351 0.97686 1.22748 0.96587 0.95165 1.00595 1.20616 0.96186 0.87187 0.99302 0.89532 1.21782 0.98167 0.95322 0.90790 1.77381 1.25399 0.91011 1.20594 1.46315 1.56371 1.06001 1.08399 0.69719 1.23004 0.96620 1.00769 0.83562 1.19896 1.20662 0.92477 0.95672 1.19404 0.82854 1.02570 0.87126 1.46017 1.10283 1.72152 1.06014 1.18243 0.87738 0.76274 0.82776 1.90750 1.41866 1.52399 1.60151 1.21059 0.92507 1.03133 0.91976 1.22287 1.00153 0.97402 0.94761 1.22051 0.90907 0.94916 1.02726 1.22836 1.02216 0.96738 0.93918 1.23407 0.93438 0.94810 0.95736 1.67509 1.00248 1.10929 1.40415 1.21600 0.94742 0.84439 0.96979 0.94352 0.96849 0.97518 0.90285 0.91656 0.75730 0.88908 0.92534 0.74937 0.83849 0.80891 0.80452 0.79538 0.96286 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 10.31 21.65 0.22 -59.47 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.24 -14.59 10.28 84.03 0.86 -13.72 16 8 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 9 N -0.63 -34.90 3.39 -691.97 -2.35 -37.25 16 10 C 0.19 10.09 5.38 86.73 0.47 10.56 16 11 C -0.11 -4.61 6.42 31.88 0.20 -4.40 16 12 C -0.01 -0.44 3.46 -10.04 -0.03 -0.48 16 13 H 0.09 3.35 7.34 -2.38 -0.02 3.33 16 14 C 0.11 3.32 5.90 43.10 0.25 3.58 16 15 N -0.32 -9.76 12.39 -47.38 -0.59 -10.35 16 16 N -0.46 -8.70 7.36 -57.59 -0.42 -9.12 16 17 H 0.46 5.11 8.96 -213.33 -1.91 3.20 16 18 C 0.11 1.75 11.90 83.54 0.99 2.74 16 19 C -0.28 -6.47 5.47 -20.15 -0.11 -6.58 16 20 C 0.20 4.89 5.65 85.63 0.48 5.38 16 21 N -0.69 -17.46 5.54 -469.39 -2.60 -20.06 16 22 C 0.56 16.01 7.81 86.88 0.68 16.69 16 23 O -0.57 -19.24 16.32 -3.78 -0.06 -19.30 16 24 C 0.05 1.23 6.75 41.91 0.28 1.52 16 25 C -0.12 -2.50 9.63 22.61 0.22 -2.28 16 26 C -0.08 -1.01 10.17 22.45 0.23 -0.79 16 27 C -0.14 -1.46 10.12 22.44 0.23 -1.23 16 28 C 0.09 1.30 11.18 84.82 0.95 2.25 16 29 N -0.48 -10.65 9.54 -184.91 -1.76 -12.42 16 30 C 0.15 6.81 6.68 86.86 0.58 7.39 16 31 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 32 H 0.01 0.78 7.38 -2.39 -0.02 0.77 16 33 H 0.01 0.39 7.50 -2.39 -0.02 0.38 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.06 2.66 7.85 -2.39 -0.02 2.64 16 36 H 0.23 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.63 7.78 -2.39 -0.02 1.61 16 39 H 0.41 10.05 7.79 -92.71 -0.72 9.32 16 40 H 0.14 2.87 7.64 -2.91 -0.02 2.85 16 41 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.02 0.91 7.95 -2.39 -0.02 0.89 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -84.14 380.99 -0.38 -84.51 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -1.59 Total: 16.55 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.75 Total: 17.13 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -7.50 Total: -148.67 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.06 Total: -19.30 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -84.14 -0.38 -84.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070391894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.293 kcal (2) G-P(sol) polarization free energy of solvation -84.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds