Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.89013 * 27.11279 * 10 9 7 12 12 C 1.53957 * 113.66469 * 255.76878 * 10 9 7 13 13 C 1.53943 * 87.29592 * 270.26501 * 12 10 9 14 14 H 1.09001 * 113.66277 * 89.82718 * 13 12 10 15 15 N 1.46504 * 113.66052 * 220.79132 * 13 12 10 16 16 C 1.34772 * 120.00084 * 255.49185 * 15 13 12 17 17 O 1.21582 * 120.00127 * 0.02562 * 16 15 13 18 18 C 1.47686 * 120.00224 * 180.02562 * 16 15 13 19 19 C 1.39980 * 120.38274 * 359.97438 * 18 16 15 20 20 N 1.31382 * 121.15912 * 179.97438 * 19 18 16 21 21 C 1.32550 * 121.79602 * 0.02601 * 20 19 18 22 22 N 1.37578 * 133.56789 * 179.97438 * 21 20 19 23 23 H 0.96997 * 126.23934 * 0.02562 * 22 21 20 24 24 C 1.36169 * 107.52242 * 180.02562 * 22 21 20 25 25 N 1.30053 * 110.11308 * 0.02562 * 24 22 21 26 26 C 1.35781 * 109.43730 * 359.97438 * 25 24 22 27 27 C 1.39482 * 133.74695 * 180.32112 * 26 25 24 28 28 C 1.52909 * 113.66450 * 158.58396 * 10 9 7 29 29 C 1.52905 * 121.13976 * 323.85453 * 28 10 9 30 30 C 1.53951 * 86.78325 * 209.37453 * 29 28 10 31 31 C 1.52905 * 121.13949 * 215.28709 * 28 10 9 32 32 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.09007 * 113.57592 * 24.87199 * 12 10 9 35 35 H 1.09001 * 113.57931 * 155.57895 * 12 10 9 36 36 H 0.96998 * 119.99673 * 75.49918 * 15 13 12 37 37 H 1.08005 * 119.41705 * 0.02562 * 19 18 16 38 38 H 1.08004 * 124.94049 * 179.97438 * 24 22 21 39 39 H 1.08004 * 120.97360 * 359.96701 * 27 26 25 40 40 H 1.09005 * 113.66191 * 323.84405 * 29 28 10 41 41 H 1.08999 * 113.66553 * 94.89899 * 29 28 10 42 42 H 1.09001 * 113.58062 * 270.12702 * 30 29 28 43 43 H 1.09006 * 113.65276 * 139.34895 * 30 29 28 44 44 H 1.09000 * 113.66438 * 265.09198 * 31 28 10 45 45 H 1.08995 * 113.66448 * 36.15502 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5498 -3.2870 -0.4490 12 6 4.7218 -2.8263 1.3728 13 6 5.9810 -2.0601 0.9290 14 1 5.9620 -1.0010 1.1861 15 7 7.2338 -2.7166 1.3109 16 6 7.9610 -2.2352 2.3384 17 8 7.5771 -1.2563 2.9488 18 6 9.2242 -2.8967 2.7229 19 6 9.6735 -4.0245 2.0261 20 7 10.7951 -4.6246 2.3548 21 6 11.5500 -4.1943 3.3558 22 7 12.7391 -4.6230 3.8989 23 1 13.2631 -5.3839 3.6035 24 6 13.0463 -3.7844 4.9268 25 7 12.1270 -2.8727 5.0502 26 6 11.1689 -3.0668 4.1079 27 6 9.9868 -2.4014 3.7831 28 6 5.5479 -2.3529 -0.5079 29 6 5.9039 -1.4012 -1.6505 30 6 7.0319 -2.3872 -2.0047 31 6 6.1946 -3.4794 -1.3146 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 -0.0007 34 1 4.2042 -2.3648 2.2139 35 1 4.8864 -3.8947 1.5125 36 1 7.5399 -3.4978 0.8240 37 1 9.0882 -4.4076 1.2032 38 1 13.9251 -3.8651 5.5495 39 1 9.6688 -1.5306 4.3373 40 1 5.1309 -1.3275 -2.4155 41 1 6.2628 -0.4285 -1.3140 42 1 7.9729 -2.1737 -1.4979 43 1 7.1550 -2.5441 -3.0764 44 1 6.7857 -4.1670 -0.7098 45 1 5.5033 -3.9898 -1.9852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078634445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 119.051187 kcal Electronic energy + Delta-G solvation = -29058.293666 eV Core-core repulsion = 25078.836520 eV Total energy + Delta-G solvation = -3979.457146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.82701 -40.87944 -39.51825 -38.03667 -35.25551 -34.29282 -34.08867 -32.56607 -31.67928 -30.53711 -29.85846 -25.71409 -25.57017 -24.39413 -24.29458 -23.80036 -22.48573 -22.16033 -20.71740 -20.19807 -19.13878 -18.82301 -18.09647 -17.47258 -16.90837 -16.51787 -16.19164 -15.81937 -15.33937 -15.10274 -14.80890 -14.63337 -14.43074 -14.06252 -13.80693 -13.47695 -13.13491 -12.92817 -12.82215 -12.52975 -12.26255 -12.07902 -12.05311 -11.73046 -11.61041 -11.54812 -11.10460 -10.91137 -10.79368 -10.32897 -10.23248 -10.06687 -9.98274 -9.66905 -9.61093 -9.49286 -9.35278 -9.09108 -8.87575 -8.77861 -7.27948 -5.78030 -3.14220 0.30556 0.40283 2.01131 2.24998 2.71348 2.99714 3.39662 3.44209 3.47904 3.52243 3.61684 3.90302 4.20466 4.39896 4.50850 4.54950 4.58538 4.59319 4.63865 4.80763 4.89745 4.99030 5.17863 5.25505 5.35211 5.51158 5.57107 5.58932 5.65435 5.70801 5.80402 5.87334 5.92825 5.96554 5.98464 6.10568 6.21113 6.30659 6.48687 6.53353 6.57591 6.59583 6.70157 6.93016 7.14874 7.29867 7.48365 7.98822 8.15906 8.41394 9.19175 9.91607 10.10328 11.39878 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.002531 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.533712 B =11062.133497 C =11777.204618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.726 5.726 10 C 0.192 3.808 11 H 0.076 0.924 12 C -0.181 4.181 13 C 0.151 3.849 14 H 0.114 0.886 15 N -0.709 5.709 16 C 0.565 3.435 17 O -0.530 6.530 18 C -0.195 4.195 19 C 0.175 3.825 20 N -0.484 5.484 21 C 0.255 3.745 22 N -0.588 5.588 23 H 0.431 0.569 24 C 0.276 3.724 25 N -0.479 5.479 26 C -0.007 4.007 27 C 0.048 3.952 28 C -0.129 4.129 29 C -0.120 4.120 30 C -0.141 4.141 31 C -0.108 4.108 32 H 0.260 0.740 33 H 0.363 0.637 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.395 0.605 37 H 0.169 0.831 38 H 0.228 0.772 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.675 -12.692 3.458 31.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.365 5.365 10 C 0.079 3.921 11 H 0.094 0.906 12 C -0.223 4.223 13 C 0.047 3.953 14 H 0.132 0.868 15 N -0.360 5.360 16 C 0.350 3.650 17 O -0.406 6.406 18 C -0.203 4.203 19 C 0.005 3.995 20 N -0.197 5.197 21 C 0.018 3.982 22 N -0.203 5.203 23 H 0.271 0.729 24 C -0.012 4.012 25 N -0.198 5.198 26 C -0.127 4.127 27 C 0.021 3.979 28 C -0.132 4.132 29 C -0.158 4.158 30 C -0.178 4.178 31 C -0.146 4.146 32 H 0.070 0.930 33 H 0.197 0.803 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.186 0.814 38 H 0.244 0.756 39 H 0.175 0.825 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 28.374 -12.036 4.077 31.090 hybrid contribution 0.893 0.480 -0.326 1.065 sum 29.267 -11.556 3.751 31.688 Atomic orbital electron populations 1.69690 1.05103 1.25909 1.57148 1.24651 0.95208 0.97179 1.01764 0.86616 0.79482 0.85087 0.77837 1.20991 1.21669 1.20088 1.19065 0.80273 0.94790 1.43404 0.89008 1.42445 1.03894 1.01495 1.88696 1.20731 0.88741 0.90114 0.92490 0.90593 1.24285 0.96332 0.99285 1.02421 1.22358 0.81190 0.98374 0.93356 0.86828 1.45992 1.24213 1.32502 1.33305 1.17827 0.82852 0.83697 0.80603 1.90831 1.70837 1.26171 1.52805 1.20755 0.98640 1.00235 1.00701 1.22713 0.90044 0.90121 0.96591 1.66388 1.06065 1.32260 1.14943 1.19138 0.89601 0.94543 0.94919 1.42889 1.19180 1.29057 1.29180 0.72935 1.25572 0.99684 0.86499 0.89463 1.70519 1.02504 1.24120 1.22652 1.19572 0.97820 0.97759 0.97539 1.20904 0.88235 0.96670 0.92137 1.23498 0.98785 0.98019 0.92857 1.22619 0.97873 0.97103 0.98176 1.22869 0.97560 0.97259 1.00161 1.22519 0.98579 0.95334 0.98161 0.92993 0.80340 0.90572 0.90735 0.76799 0.81412 0.75585 0.82503 0.89170 0.91889 0.90769 0.91703 0.92198 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.20 27.73 -169.99 -4.71 17.49 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.25 -6.77 10.46 -15.06 -0.16 -6.92 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 N -0.73 -16.58 4.92 -52.99 -0.26 -16.84 16 10 C 0.19 3.46 4.35 -67.48 -0.29 3.17 16 11 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 12 C -0.18 -2.98 7.68 -25.75 -0.20 -3.17 16 13 C 0.15 2.27 4.01 -67.48 -0.27 2.00 16 14 H 0.11 2.06 7.54 -51.93 -0.39 1.67 16 15 N -0.71 -8.46 5.26 -54.36 -0.29 -8.75 16 16 C 0.56 7.74 7.77 -12.40 -0.10 7.64 16 17 O -0.53 -9.50 16.04 5.29 0.08 -9.41 16 18 C -0.20 -2.21 5.89 -104.85 -0.62 -2.82 16 19 C 0.17 1.62 10.69 -17.09 -0.18 1.44 16 20 N -0.48 -4.86 10.36 -11.96 -0.12 -4.98 16 21 C 0.25 2.49 8.45 -155.63 -1.31 1.18 16 22 N -0.59 -3.32 6.20 -13.22 -0.08 -3.41 16 23 H 0.43 0.96 8.96 -40.82 -0.37 0.59 16 24 C 0.28 1.48 12.97 -89.71 -1.16 0.31 16 25 N -0.48 -4.81 11.29 -12.02 -0.14 -4.95 16 26 C -0.01 -0.08 7.23 -84.69 -0.61 -0.69 16 27 C 0.05 0.57 9.75 -38.58 -0.38 0.20 16 28 C -0.13 -1.82 0.91 -154.71 -0.14 -1.96 16 29 C -0.12 -1.68 7.43 -26.28 -0.20 -1.87 16 30 C -0.14 -1.50 8.08 -25.75 -0.21 -1.71 16 31 C -0.11 -1.15 7.45 -26.28 -0.20 -1.34 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 33 H 0.36 8.34 5.60 -40.82 -0.23 8.11 16 34 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.48 4.70 -40.82 -0.19 3.29 16 37 H 0.17 1.03 6.39 -52.48 -0.34 0.70 16 38 H 0.23 -0.02 8.06 -52.48 -0.42 -0.45 16 39 H 0.16 1.91 7.72 -52.48 -0.41 1.50 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.50 6.42 -51.93 -0.33 0.17 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -36.67 372.00 -10.90 -47.57 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.65 Total: 10.39 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -6.12 Total: -4.44 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.11 Total: -67.20 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.67 -10.90 -47.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.622 kcal (2) G-P(sol) polarization free energy of solvation -36.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds