Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46841 * 240.00008 * 3 2 1 5 5 H 1.48503 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99990 * 3 2 1 7 7 C 1.38805 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00066 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00417 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00318 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95082 * 26.89829 * 10 9 7 12 12 C 1.53956 * 113.66324 * 255.49651 * 10 9 7 13 13 C 1.53949 * 87.29496 * 220.79299 * 12 10 9 14 14 H 1.09004 * 113.66253 * 270.16720 * 13 12 10 15 15 N 1.46506 * 113.66154 * 139.20495 * 13 12 10 16 16 C 1.34780 * 119.99528 * 104.50325 * 15 13 12 17 17 O 1.21567 * 120.00120 * 0.02562 * 16 15 13 18 18 C 1.47689 * 119.99377 * 180.02562 * 16 15 13 19 19 C 1.39986 * 120.38613 * 359.97438 * 18 16 15 20 20 N 1.31391 * 121.15799 * 179.97438 * 19 18 16 21 21 C 1.32543 * 121.79285 * 0.02562 * 20 19 18 22 22 N 1.37583 * 133.56572 * 180.02562 * 21 20 19 23 23 H 0.97001 * 126.23248 * 0.02562 * 22 21 20 24 24 C 1.36169 * 107.52309 * 179.97438 * 22 21 20 25 25 N 1.30059 * 110.11347 * 0.22745 * 24 22 21 26 26 C 1.35777 * 109.43492 * 359.62448 * 25 24 22 27 27 C 1.39477 * 133.74535 * 180.10147 * 26 25 24 28 28 C 1.52903 * 86.78131 * 24.73339 * 13 12 10 29 29 C 1.52913 * 121.14044 * 209.37533 * 28 13 12 30 30 C 1.53950 * 86.78632 * 209.37824 * 29 28 13 31 31 C 1.52913 * 121.13934 * 100.81987 * 28 13 12 32 32 H 0.96999 * 119.99638 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99951 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.58430 * 106.18394 * 12 10 9 35 35 H 1.09004 * 113.57556 * 335.39542 * 12 10 9 36 36 H 0.96994 * 120.00094 * 284.50694 * 15 13 12 37 37 H 1.07998 * 119.42092 * 359.95911 * 19 18 16 38 38 H 1.08002 * 124.93838 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.97340 * 0.31099 * 27 26 25 40 40 H 1.08990 * 113.66377 * 323.85452 * 29 28 13 41 41 H 1.09001 * 113.65750 * 94.90601 * 29 28 13 42 42 H 1.09003 * 113.58322 * 270.13697 * 30 29 28 43 43 H 1.08999 * 113.57620 * 139.34030 * 30 29 28 44 44 H 1.08999 * 113.65911 * 265.09683 * 31 28 13 45 45 H 1.08993 * 113.66355 * 36.14466 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 3.0460 -3.5771 0.4549 12 6 2.0600 -4.3691 -1.3633 13 6 1.8526 -5.6865 -0.5941 14 1 2.7830 -6.1781 -0.3096 15 7 0.8995 -6.5970 -1.2337 16 6 1.3455 -7.6828 -1.8960 17 8 2.5385 -7.9069 -1.9622 18 6 0.3848 -8.6003 -2.5412 19 6 -0.9907 -8.3502 -2.4694 20 7 -1.8587 -9.1560 -3.0382 21 6 -1.4765 -10.2375 -3.7024 22 7 -2.1562 -11.2261 -4.3761 23 1 -3.1183 -11.2915 -4.4803 24 6 -1.2319 -12.0951 -4.8706 25 7 -0.0341 -11.7090 -4.5420 26 6 -0.1114 -10.5610 -3.8212 27 6 0.8380 -9.7281 -3.2294 28 6 1.2383 -4.8387 0.5203 29 6 1.3200 -5.2763 1.9832 30 6 -0.0077 -4.5254 2.1918 31 6 -0.2778 -4.7353 0.6908 32 1 -0.4849 0.8401 0.0004 33 1 0.3556 -2.3881 0.0016 34 1 3.0166 -4.3134 -1.8828 35 1 1.2166 -4.0974 -1.9981 36 1 -0.0523 -6.4183 -1.1805 37 1 -1.3446 -7.4798 -1.9370 38 1 -1.4604 -12.9788 -5.4480 39 1 1.8929 -9.9479 -3.3023 40 1 1.2395 -6.3542 2.1225 41 1 2.1594 -4.8394 2.5242 42 1 0.1219 -3.4793 2.4694 43 1 -0.7093 -5.0518 2.8389 44 1 -0.7149 -3.8662 0.1992 45 1 -0.8074 -5.6612 0.4668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078634446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 113.815057 kcal Electronic energy + Delta-G solvation = -28869.306672 eV Core-core repulsion = 24889.622470 eV Total energy + Delta-G solvation = -3979.684202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.77447 -40.69838 -39.45832 -37.99676 -34.90580 -34.20362 -34.04333 -32.63389 -31.61526 -30.36392 -29.61002 -25.53175 -25.40564 -24.28083 -24.17752 -23.97689 -22.31129 -21.96165 -20.57844 -20.42294 -19.08181 -18.45919 -17.85963 -17.40729 -16.73916 -16.49540 -16.13778 -15.82181 -15.11572 -14.96583 -14.69428 -14.56621 -14.48474 -14.05022 -13.77382 -13.40412 -13.06138 -12.97186 -12.75155 -12.48875 -12.10399 -11.85916 -11.58354 -11.52928 -11.48793 -11.23369 -10.92130 -10.80519 -10.72271 -10.26110 -10.19129 -10.04876 -9.87798 -9.77532 -9.53952 -9.44522 -9.30375 -9.03556 -8.85604 -8.67469 -6.97978 -5.80613 -3.08856 0.35653 0.45970 2.06667 2.29916 2.75638 3.06195 3.43031 3.47922 3.48481 3.57454 3.67486 3.95539 4.26585 4.45990 4.54949 4.60133 4.63311 4.77396 4.92326 4.95330 5.05856 5.22518 5.24787 5.31093 5.44625 5.62896 5.67662 5.69558 5.88181 5.89050 5.96548 5.98965 6.02953 6.06587 6.21385 6.32549 6.38914 6.50979 6.56189 6.58570 6.61180 6.84687 6.91309 7.06285 7.19166 7.36708 7.55988 7.68781 8.19807 8.38456 9.50123 10.06530 10.41500 11.41619 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.002265 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.577400 B =12357.692372 C =12452.490187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.192 3.808 11 H 0.081 0.919 12 C -0.174 4.174 13 C 0.131 3.869 14 H 0.112 0.888 15 N -0.704 5.704 16 C 0.567 3.433 17 O -0.537 6.537 18 C -0.195 4.195 19 C 0.176 3.824 20 N -0.484 5.484 21 C 0.255 3.745 22 N -0.588 5.588 23 H 0.431 0.569 24 C 0.276 3.724 25 N -0.480 5.480 26 C -0.009 4.009 27 C 0.048 3.952 28 C -0.118 4.118 29 C -0.126 4.126 30 C -0.130 4.130 31 C -0.118 4.118 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.398 0.602 37 H 0.170 0.830 38 H 0.228 0.772 39 H 0.157 0.843 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -23.928 -5.448 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.080 3.920 11 H 0.099 0.901 12 C -0.216 4.216 13 C 0.027 3.973 14 H 0.129 0.871 15 N -0.354 5.354 16 C 0.352 3.648 17 O -0.414 6.414 18 C -0.204 4.204 19 C 0.006 3.994 20 N -0.196 5.196 21 C 0.018 3.982 22 N -0.203 5.203 23 H 0.271 0.729 24 C -0.013 4.013 25 N -0.199 5.199 26 C -0.128 4.128 27 C 0.020 3.980 28 C -0.120 4.120 29 C -0.164 4.164 30 C -0.167 4.167 31 C -0.156 4.156 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.234 0.766 37 H 0.187 0.813 38 H 0.244 0.756 39 H 0.174 0.826 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.547 -24.156 -5.644 25.419 hybrid contribution -0.854 1.083 -0.093 1.382 sum -6.401 -23.073 -5.737 24.622 Atomic orbital electron populations 1.69640 1.05082 1.25850 1.57486 1.24733 0.95513 0.97700 1.02808 0.86275 0.78544 0.83520 0.77885 1.21260 1.21759 1.21248 1.19245 0.91093 0.84102 1.42909 0.91114 1.42332 1.05813 0.99442 1.86918 1.21054 0.94491 0.84335 0.92166 0.90147 1.24293 1.01851 0.94913 1.00571 1.22356 0.92786 0.88023 0.94145 0.87053 1.45898 1.10752 1.24814 1.53952 1.17792 0.87680 0.80719 0.78561 1.90785 1.16062 1.74160 1.60415 1.20763 0.95099 0.98868 1.05640 1.22769 0.87685 0.95879 0.93019 1.66405 1.39407 1.02985 1.10793 1.19157 0.90208 0.91587 0.97211 1.42891 1.11060 1.21009 1.45341 0.72922 1.25557 0.82763 0.95597 0.97359 1.70511 1.22445 1.11241 1.15677 1.19570 0.92587 0.96649 1.03999 1.20873 1.00226 0.88693 0.88216 1.23566 0.97072 0.98014 0.93348 1.22716 0.98533 0.99218 0.95926 1.22731 0.96680 1.01597 0.95731 1.22449 0.94316 1.01281 0.97555 0.93436 0.77748 0.92008 0.90079 0.76608 0.81279 0.75623 0.82557 0.90924 0.91418 0.89112 0.92470 0.90139 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.71 -16.53 5.35 -52.99 -0.28 -16.82 16 10 C 0.19 3.61 4.35 -67.48 -0.29 3.31 16 11 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 12 C -0.17 -2.99 7.68 -25.75 -0.20 -3.18 16 13 C 0.13 1.92 4.08 -67.48 -0.28 1.65 16 14 H 0.11 1.71 7.54 -51.93 -0.39 1.32 16 15 N -0.70 -8.84 5.25 -54.36 -0.29 -9.13 16 16 C 0.57 7.76 7.77 -12.40 -0.10 7.67 16 17 O -0.54 -9.14 16.04 5.31 0.09 -9.06 16 18 C -0.20 -2.29 5.89 -104.85 -0.62 -2.91 16 19 C 0.18 1.80 10.69 -17.09 -0.18 1.62 16 20 N -0.48 -5.29 10.36 -11.96 -0.12 -5.42 16 21 C 0.26 2.65 8.45 -155.63 -1.31 1.33 16 22 N -0.59 -3.64 6.20 -13.22 -0.08 -3.72 16 23 H 0.43 1.22 8.96 -40.82 -0.37 0.85 16 24 C 0.28 1.56 12.97 -89.70 -1.16 0.40 16 25 N -0.48 -4.90 11.29 -12.02 -0.14 -5.04 16 26 C -0.01 -0.10 7.23 -84.69 -0.61 -0.71 16 27 C 0.05 0.57 9.75 -38.58 -0.38 0.19 16 28 C -0.12 -1.77 1.06 -154.71 -0.16 -1.93 16 29 C -0.13 -1.76 7.84 -26.28 -0.21 -1.96 16 30 C -0.13 -1.89 8.08 -25.75 -0.21 -2.09 16 31 C -0.12 -1.68 6.77 -26.28 -0.18 -1.86 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.39 9.49 5.86 -40.82 -0.24 9.25 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.40 4.14 4.96 -40.82 -0.20 3.93 16 37 H 0.17 1.29 6.39 -52.49 -0.34 0.96 16 38 H 0.23 0.04 8.06 -52.49 -0.42 -0.38 16 39 H 0.16 1.86 7.72 -52.49 -0.41 1.45 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.34 6.42 -51.93 -0.33 1.00 16 45 H 0.07 0.80 6.96 -51.93 -0.36 0.43 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -34.49 372.50 -11.20 -45.70 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.56 Total: 12.83 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -6.13 Total: -5.50 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.19 Total: -66.54 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.49 -11.20 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.513 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds