Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46841 * 240.00008 * 3 2 1 5 5 H 1.48503 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99990 * 3 2 1 7 7 C 1.38805 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00066 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00417 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00318 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95082 * 26.89829 * 10 9 7 12 12 C 1.53956 * 113.66324 * 255.49651 * 10 9 7 13 13 C 1.53949 * 87.29496 * 220.79299 * 12 10 9 14 14 H 1.09004 * 113.66253 * 270.16720 * 13 12 10 15 15 N 1.46506 * 113.66154 * 139.20495 * 13 12 10 16 16 C 1.34780 * 119.99528 * 104.50325 * 15 13 12 17 17 O 1.21567 * 120.00120 * 0.02562 * 16 15 13 18 18 C 1.47689 * 119.99377 * 180.02562 * 16 15 13 19 19 C 1.39986 * 120.38613 * 359.97438 * 18 16 15 20 20 N 1.31391 * 121.15799 * 179.97438 * 19 18 16 21 21 C 1.32543 * 121.79285 * 0.02562 * 20 19 18 22 22 N 1.37583 * 133.56572 * 180.02562 * 21 20 19 23 23 H 0.97001 * 126.23248 * 0.02562 * 22 21 20 24 24 C 1.36169 * 107.52309 * 179.97438 * 22 21 20 25 25 N 1.30059 * 110.11347 * 0.22745 * 24 22 21 26 26 C 1.35777 * 109.43492 * 359.62448 * 25 24 22 27 27 C 1.39477 * 133.74535 * 180.10147 * 26 25 24 28 28 C 1.52903 * 86.78131 * 24.73339 * 13 12 10 29 29 C 1.52913 * 121.14044 * 209.37533 * 28 13 12 30 30 C 1.53950 * 86.78632 * 209.37824 * 29 28 13 31 31 C 1.52913 * 121.13934 * 100.81987 * 28 13 12 32 32 H 0.96999 * 119.99638 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99951 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.58430 * 106.18394 * 12 10 9 35 35 H 1.09004 * 113.57556 * 335.39542 * 12 10 9 36 36 H 0.96994 * 120.00094 * 284.50694 * 15 13 12 37 37 H 1.07998 * 119.42092 * 359.95911 * 19 18 16 38 38 H 1.08002 * 124.93838 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.97340 * 0.31099 * 27 26 25 40 40 H 1.08990 * 113.66377 * 323.85452 * 29 28 13 41 41 H 1.09001 * 113.65750 * 94.90601 * 29 28 13 42 42 H 1.09003 * 113.58322 * 270.13697 * 30 29 28 43 43 H 1.08999 * 113.57620 * 139.34030 * 30 29 28 44 44 H 1.08999 * 113.65911 * 265.09683 * 31 28 13 45 45 H 1.08993 * 113.66355 * 36.14466 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 3.0460 -3.5771 0.4549 12 6 2.0600 -4.3691 -1.3633 13 6 1.8526 -5.6865 -0.5941 14 1 2.7830 -6.1781 -0.3096 15 7 0.8995 -6.5970 -1.2337 16 6 1.3455 -7.6828 -1.8960 17 8 2.5385 -7.9069 -1.9622 18 6 0.3848 -8.6003 -2.5412 19 6 -0.9907 -8.3502 -2.4694 20 7 -1.8587 -9.1560 -3.0382 21 6 -1.4765 -10.2375 -3.7024 22 7 -2.1562 -11.2261 -4.3761 23 1 -3.1183 -11.2915 -4.4803 24 6 -1.2319 -12.0951 -4.8706 25 7 -0.0341 -11.7090 -4.5420 26 6 -0.1114 -10.5610 -3.8212 27 6 0.8380 -9.7281 -3.2294 28 6 1.2383 -4.8387 0.5203 29 6 1.3200 -5.2763 1.9832 30 6 -0.0077 -4.5254 2.1918 31 6 -0.2778 -4.7353 0.6908 32 1 -0.4849 0.8401 0.0004 33 1 0.3556 -2.3881 0.0016 34 1 3.0166 -4.3134 -1.8828 35 1 1.2166 -4.0974 -1.9981 36 1 -0.0523 -6.4183 -1.1805 37 1 -1.3446 -7.4798 -1.9370 38 1 -1.4604 -12.9788 -5.4480 39 1 1.8929 -9.9479 -3.3023 40 1 1.2395 -6.3542 2.1225 41 1 2.1594 -4.8394 2.5242 42 1 0.1219 -3.4793 2.4694 43 1 -0.7093 -5.0518 2.8389 44 1 -0.7149 -3.8662 0.1992 45 1 -0.8074 -5.6612 0.4668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078634446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = 90.904319 kcal Electronic energy + Delta-G solvation = -28870.300156 eV Core-core repulsion = 24889.622470 eV Total energy + Delta-G solvation = -3980.677686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.44223 -41.93941 -40.50778 -38.89779 -36.24722 -35.77632 -34.77880 -34.13756 -32.48164 -31.79235 -30.74998 -26.80833 -26.64536 -25.66903 -25.31003 -24.93113 -23.53935 -22.79224 -21.76392 -21.61246 -19.77050 -19.64594 -19.31877 -18.52661 -17.97629 -17.44452 -16.98372 -16.84429 -16.41028 -16.26877 -16.10065 -15.83642 -15.48583 -15.03849 -14.79651 -14.70469 -14.29460 -14.19492 -13.88210 -13.67126 -13.45189 -13.14596 -13.07567 -12.85083 -12.69124 -12.35263 -12.30676 -12.24868 -12.17640 -12.04286 -11.82902 -11.37244 -11.28929 -10.99623 -10.95609 -10.68506 -10.39197 -10.13716 -9.86280 -9.72132 -8.91976 -7.91566 -5.17901 -0.46529 -0.29012 1.48951 1.50586 1.50805 1.56417 1.66121 1.81463 2.01855 2.58825 2.70347 3.02621 3.32172 3.39352 3.51331 3.57305 3.60949 3.66219 3.73398 3.80267 3.96447 4.05605 4.12787 4.16387 4.24354 4.32644 4.59362 4.65565 4.68932 4.77232 4.81153 4.85309 4.90447 4.91977 5.06401 5.14456 5.18350 5.25470 5.29430 5.34072 5.53818 5.54390 5.66795 5.72584 6.11306 6.31162 6.49274 6.58823 6.68382 7.13663 7.38765 8.15317 8.40025 9.31101 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.002265 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.577400 B =12357.692372 C =12452.490187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.174 3.826 11 H 0.074 0.926 12 C -0.170 4.170 13 C 0.151 3.849 14 H 0.109 0.891 15 N -0.692 5.692 16 C 0.571 3.429 17 O -0.574 6.574 18 C -0.200 4.200 19 C 0.176 3.824 20 N -0.490 5.490 21 C 0.243 3.757 22 N -0.574 5.574 23 H 0.448 0.552 24 C 0.307 3.693 25 N -0.527 5.527 26 C -0.025 4.025 27 C 0.032 3.968 28 C -0.108 4.108 29 C -0.116 4.116 30 C -0.130 4.130 31 C -0.112 4.112 32 H 0.250 0.750 33 H 0.380 0.620 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.195 0.805 38 H 0.283 0.717 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 -26.499 -5.862 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.063 3.937 11 H 0.092 0.908 12 C -0.212 4.212 13 C 0.046 3.954 14 H 0.127 0.873 15 N -0.343 5.343 16 C 0.359 3.641 17 O -0.455 6.455 18 C -0.209 4.209 19 C 0.007 3.993 20 N -0.202 5.202 21 C 0.005 3.995 22 N -0.190 5.190 23 H 0.292 0.708 24 C 0.019 3.981 25 N -0.247 5.247 26 C -0.144 4.144 27 C 0.004 3.996 28 C -0.110 4.110 29 C -0.154 4.154 30 C -0.168 4.168 31 C -0.150 4.150 32 H 0.059 0.941 33 H 0.214 0.786 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.249 0.751 37 H 0.211 0.789 38 H 0.298 0.702 39 H 0.163 0.837 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.972 -26.773 -6.063 28.322 hybrid contribution -0.422 1.701 -0.062 1.754 sum -7.395 -25.072 -6.126 26.847 Atomic orbital electron populations 1.69782 1.06299 1.25935 1.59574 1.25440 0.96324 1.00659 1.04000 0.85318 0.77262 0.79823 0.77990 1.20863 1.22310 1.20575 1.19602 0.91403 0.85434 1.40804 0.90975 1.42422 1.05588 1.00207 1.87222 1.21309 0.94727 0.83876 0.93804 0.90764 1.24139 1.01152 0.96467 0.99483 1.21987 0.93141 0.87265 0.93050 0.87296 1.45696 1.11078 1.24083 1.53438 1.18036 0.87428 0.80729 0.77920 1.90767 1.17796 1.75089 1.61807 1.20531 0.95330 0.98624 1.06371 1.23079 0.86857 0.96462 0.92918 1.66494 1.39357 1.03308 1.11074 1.19444 0.90486 0.92107 0.97451 1.42988 1.12137 1.19746 1.44129 0.70815 1.26711 0.81252 0.95486 0.94658 1.70521 1.24984 1.11595 1.17571 1.19717 0.93037 0.97284 1.04359 1.20884 1.00104 0.89458 0.89111 1.23321 0.97523 0.95650 0.94554 1.22722 0.97862 1.00618 0.94184 1.22641 0.97839 0.99890 0.96395 1.22507 0.93468 1.02014 0.97004 0.94118 0.78589 0.92680 0.91031 0.75076 0.78862 0.70169 0.83672 0.88235 0.92121 0.92731 0.89877 0.92781 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -13.07 9.98 84.03 0.84 -12.23 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.72 -34.38 5.35 -321.57 -1.72 -36.10 16 10 C 0.17 6.60 4.35 45.28 0.20 6.80 16 11 H 0.07 2.89 8.12 -2.39 -0.02 2.87 16 12 C -0.17 -5.90 7.68 31.23 0.24 -5.66 16 13 C 0.15 4.28 4.08 45.28 0.18 4.47 16 14 H 0.11 3.26 7.54 -2.38 -0.02 3.24 16 15 N -0.69 -16.38 5.25 -444.17 -2.33 -18.71 16 16 C 0.57 15.32 7.77 86.74 0.67 15.99 16 17 O -0.57 -19.72 16.04 -3.93 -0.06 -19.78 16 18 C -0.20 -4.57 5.89 -20.01 -0.12 -4.69 16 19 C 0.18 3.31 10.69 85.18 0.91 4.22 16 20 N -0.49 -9.79 10.36 -191.75 -1.99 -11.77 16 21 C 0.24 4.59 8.45 133.91 1.13 5.72 16 22 N -0.57 -5.27 6.20 -195.73 -1.21 -6.49 16 23 H 0.45 0.89 8.96 -92.71 -0.83 0.06 16 24 C 0.31 2.39 12.97 180.03 2.33 4.73 16 25 N -0.53 -9.90 11.29 -191.94 -2.17 -12.06 16 26 C -0.02 -0.55 7.23 39.46 0.29 -0.26 16 27 C 0.03 0.78 9.75 22.92 0.22 1.00 16 28 C -0.11 -3.16 1.06 -52.32 -0.06 -3.22 16 29 C -0.12 -3.02 7.84 30.89 0.24 -2.77 16 30 C -0.13 -3.61 8.08 31.23 0.25 -3.36 16 31 C -0.11 -3.02 6.77 30.89 0.21 -2.81 16 32 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.38 19.23 5.86 -92.71 -0.54 18.69 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.41 7.57 4.96 -92.71 -0.46 7.11 16 37 H 0.19 2.43 6.39 -2.91 -0.02 2.42 16 38 H 0.28 -1.43 8.06 -2.91 -0.02 -1.46 16 39 H 0.15 3.68 7.72 -2.91 -0.02 3.66 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.79 6.42 -2.39 -0.02 1.77 16 45 H 0.11 2.09 6.96 -2.39 -0.02 2.07 16 Total: -1.00 -78.02 372.50 0.09 -77.93 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.76 Total: 32.02 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 8.02 Total: 4.34 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -9.14 Total: -142.48 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.06 Total: -19.78 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -78.02 0.09 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.834 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds