Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99280 * 2 1 4 4 H 1.48502 * 109.46659 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47103 * 299.99752 * 3 2 1 6 6 H 1.48488 * 109.47555 * 60.00234 * 3 2 1 7 7 C 1.38807 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99881 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00232 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88464 * 336.34727 * 10 9 7 12 12 C 1.54143 * 113.72140 * 107.74673 * 10 9 7 13 13 C 1.53951 * 87.22709 * 139.15267 * 12 10 9 14 14 H 1.09002 * 113.66211 * 89.86561 * 13 12 10 15 15 N 1.46498 * 113.66353 * 220.82374 * 13 12 10 16 16 C 1.34769 * 120.00501 * 253.98819 * 15 13 12 17 17 O 1.21573 * 119.99783 * 359.97438 * 16 15 13 18 18 C 1.47694 * 120.00368 * 180.02562 * 16 15 13 19 19 C 1.39978 * 120.37900 * 359.97438 * 18 16 15 20 20 N 1.31397 * 121.15704 * 180.02562 * 19 18 16 21 21 C 1.32542 * 121.78998 * 359.97438 * 20 19 18 22 22 N 1.37576 * 133.56403 * 180.02562 * 21 20 19 23 23 H 0.97001 * 126.23972 * 359.97438 * 22 21 20 24 24 C 1.36168 * 107.52523 * 179.97438 * 22 21 20 25 25 N 1.30055 * 110.11044 * 0.02562 * 24 22 21 26 26 C 1.35774 * 109.43599 * 359.97438 * 25 24 22 27 27 C 1.39489 * 133.74488 * 180.02562 * 26 25 24 28 28 C 1.52911 * 113.66316 * 205.00369 * 10 9 7 29 29 C 1.52905 * 121.13569 * 346.34500 * 28 10 9 30 30 C 1.53949 * 86.78160 * 100.82144 * 29 28 10 31 31 C 1.52910 * 121.13797 * 94.91173 * 28 10 9 32 32 H 0.96994 * 120.01014 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99967 * 0.02562 * 9 7 2 34 34 H 1.08996 * 113.58053 * 24.57998 * 12 10 9 35 35 H 1.09003 * 113.63743 * 253.73460 * 12 10 9 36 36 H 0.97007 * 119.99889 * 73.98969 * 15 13 12 37 37 H 1.07994 * 119.42378 * 0.03515 * 19 18 16 38 38 H 1.08000 * 124.94644 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.97034 * 359.97438 * 27 26 25 40 40 H 1.08998 * 113.66059 * 215.29363 * 29 28 10 41 41 H 1.08997 * 113.66384 * 346.35032 * 29 28 10 42 42 H 1.08999 * 113.58060 * 270.12834 * 30 29 28 43 43 H 1.09003 * 113.64906 * 139.34694 * 30 29 28 44 44 H 1.08998 * 113.66495 * 13.64500 * 31 28 10 45 45 H 1.09000 * 113.66613 * 144.61933 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 1 3.0668 -3.5641 -0.4002 12 6 1.9958 -4.4076 1.3475 13 6 1.8253 -5.7018 0.5314 14 1 2.7682 -6.1864 0.2777 15 7 0.8427 -6.6290 1.0980 16 6 1.2555 -7.7497 1.7226 17 8 2.4433 -7.9914 1.8154 18 6 0.2649 -8.6847 2.2933 19 6 -1.1048 -8.4145 2.1904 20 7 -1.9992 -9.2354 2.6930 21 6 -1.6501 -10.3515 3.3168 22 7 -2.3615 -11.3626 3.9204 23 1 -3.3272 -11.4215 3.9906 24 6 -1.4630 -12.2656 4.4014 25 7 -0.2511 -11.8765 4.1341 26 6 -0.2931 -10.6970 3.4628 27 6 0.6838 -9.8485 2.9418 28 6 1.2659 -4.8234 -0.5882 29 6 -0.2399 -4.7144 -0.8301 30 6 0.1037 -4.4635 -2.3096 31 6 1.4201 -5.2206 -2.0567 32 1 -0.4851 0.8399 -0.0004 33 1 0.3557 -2.3881 0.0016 34 1 1.1231 -4.1531 1.9488 35 1 2.9265 -4.3684 1.9135 36 1 -0.1051 -6.4364 1.0236 37 1 -1.4320 -7.5157 1.6892 38 1 -1.7193 -13.1730 4.9281 39 1 1.7333 -10.0846 3.0372 40 1 -0.7791 -5.6459 -0.6581 41 1 -0.7015 -3.8589 -0.3371 42 1 0.2459 -3.4103 -2.5517 43 1 -0.5643 -4.9709 -3.0058 44 1 2.2847 -4.7694 -2.5435 45 1 1.3490 -6.2945 -2.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078634447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 113.245973 kcal Electronic energy + Delta-G solvation = -28866.297138 eV Core-core repulsion = 24886.588259 eV Total energy + Delta-G solvation = -3979.708879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.77694 -40.68743 -39.45385 -37.99729 -34.89952 -34.20708 -34.04488 -32.63503 -31.61692 -30.36676 -29.61470 -25.52348 -25.40707 -24.28268 -24.16991 -23.98024 -22.31335 -21.96368 -20.58289 -20.42906 -19.08327 -18.46219 -17.85944 -17.40733 -16.73692 -16.49746 -16.13935 -15.82182 -15.11869 -14.95714 -14.69217 -14.56628 -14.48752 -14.04382 -13.77243 -13.40582 -13.06265 -12.98031 -12.74728 -12.49185 -12.08879 -11.87130 -11.58568 -11.52357 -11.48907 -11.23748 -10.92742 -10.81606 -10.72119 -10.24937 -10.15369 -10.04492 -9.89502 -9.77071 -9.54023 -9.44658 -9.30567 -9.03674 -8.86921 -8.67273 -6.98576 -5.81511 -3.09713 0.35512 0.45881 2.06586 2.29822 2.75416 3.06130 3.41393 3.48155 3.49612 3.57274 3.67419 3.95443 4.26520 4.45883 4.54539 4.59863 4.63213 4.78319 4.93203 4.95521 5.06679 5.23469 5.25808 5.30981 5.43909 5.62745 5.67721 5.69456 5.88453 5.89444 5.96749 5.99820 6.02928 6.07251 6.20938 6.33437 6.39111 6.51369 6.56073 6.58462 6.60391 6.85595 6.91504 7.05671 7.19071 7.36606 7.55931 7.69056 8.19598 8.37385 9.49289 10.05700 10.40570 11.40797 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.002253 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.642566 B =12423.556075 C =12502.293595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.193 3.807 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.131 3.869 14 H 0.112 0.888 15 N -0.704 5.704 16 C 0.567 3.433 17 O -0.537 6.537 18 C -0.195 4.195 19 C 0.176 3.824 20 N -0.483 5.483 21 C 0.255 3.745 22 N -0.588 5.588 23 H 0.431 0.569 24 C 0.276 3.724 25 N -0.480 5.480 26 C -0.009 4.009 27 C 0.048 3.952 28 C -0.119 4.119 29 C -0.118 4.118 30 C -0.130 4.130 31 C -0.126 4.126 32 H 0.255 0.745 33 H 0.387 0.613 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.170 0.830 38 H 0.228 0.772 39 H 0.157 0.843 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -24.083 4.596 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.100 0.900 12 C -0.217 4.217 13 C 0.027 3.973 14 H 0.130 0.870 15 N -0.354 5.354 16 C 0.352 3.648 17 O -0.415 6.415 18 C -0.204 4.204 19 C 0.006 3.994 20 N -0.196 5.196 21 C 0.018 3.982 22 N -0.203 5.203 23 H 0.271 0.729 24 C -0.013 4.013 25 N -0.199 5.199 26 C -0.128 4.128 27 C 0.020 3.980 28 C -0.122 4.122 29 C -0.155 4.155 30 C -0.167 4.167 31 C -0.164 4.164 32 H 0.065 0.935 33 H 0.222 0.778 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.234 0.766 37 H 0.187 0.813 38 H 0.244 0.756 39 H 0.174 0.826 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.719 -24.333 4.805 25.454 hybrid contribution -0.887 1.095 0.061 1.411 sum -6.606 -23.238 4.866 24.644 Atomic orbital electron populations 1.69654 1.05084 1.25636 1.57622 1.24737 0.95512 0.97717 1.02834 0.86133 0.78884 0.84134 0.77139 1.20509 1.21907 1.21918 1.19343 0.91154 0.84082 1.42669 0.90991 1.42348 1.05829 0.99480 1.86729 1.21091 0.94760 0.84336 0.91849 0.89996 1.24321 1.01928 0.95143 1.00270 1.22359 0.92408 0.87617 0.94946 0.87012 1.45894 1.10667 1.21957 1.56866 1.17796 0.87756 0.80960 0.78244 1.90786 1.16796 1.75272 1.58605 1.20758 0.95090 0.98210 1.06313 1.22769 0.87383 0.96221 0.92978 1.66409 1.39036 1.02312 1.11831 1.19153 0.90039 0.91059 0.97909 1.42890 1.10886 1.18499 1.48026 0.72922 1.25555 0.83233 0.95329 0.97161 1.70508 1.21592 1.10993 1.16783 1.19571 0.92673 0.95960 1.04607 1.20873 1.00029 0.88766 0.88335 1.23618 0.97340 0.98022 0.93209 1.22437 0.94428 1.01141 0.97539 1.22723 0.96659 1.01583 0.95729 1.22709 0.98585 0.99257 0.95815 0.93530 0.77770 0.90108 0.91971 0.76600 0.81274 0.75623 0.82558 0.91199 0.90185 0.89108 0.92523 0.91454 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -16.46 5.33 -52.89 -0.28 -16.74 16 10 C 0.19 3.60 4.36 -67.38 -0.29 3.31 16 11 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 12 C -0.17 -2.97 7.70 -25.64 -0.20 -3.16 16 13 C 0.13 1.91 4.09 -67.48 -0.28 1.64 16 14 H 0.11 1.72 7.50 -51.93 -0.39 1.33 16 15 N -0.70 -8.82 5.22 -54.36 -0.28 -9.10 16 16 C 0.57 7.74 7.77 -12.40 -0.10 7.64 16 17 O -0.54 -9.12 16.02 5.30 0.08 -9.04 16 18 C -0.20 -2.28 5.89 -104.85 -0.62 -2.90 16 19 C 0.18 1.80 10.69 -17.09 -0.18 1.61 16 20 N -0.48 -5.29 10.37 -11.97 -0.12 -5.41 16 21 C 0.26 2.64 8.45 -155.64 -1.31 1.33 16 22 N -0.59 -3.63 6.20 -13.22 -0.08 -3.71 16 23 H 0.43 1.22 8.96 -40.82 -0.37 0.85 16 24 C 0.28 1.56 12.97 -89.71 -1.16 0.39 16 25 N -0.48 -4.89 11.29 -12.02 -0.14 -5.03 16 26 C -0.01 -0.10 7.23 -84.69 -0.61 -0.71 16 27 C 0.05 0.57 9.75 -38.58 -0.38 0.19 16 28 C -0.12 -1.79 1.07 -154.71 -0.16 -1.96 16 29 C -0.12 -1.68 6.78 -26.29 -0.18 -1.85 16 30 C -0.13 -1.89 8.08 -25.75 -0.21 -2.10 16 31 C -0.13 -1.76 7.84 -26.28 -0.21 -1.97 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.39 9.47 5.92 -40.82 -0.24 9.23 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.40 4.13 5.01 -40.82 -0.20 3.93 16 37 H 0.17 1.29 6.39 -52.49 -0.34 0.95 16 38 H 0.23 0.04 8.06 -52.49 -0.42 -0.39 16 39 H 0.16 1.85 7.72 -52.49 -0.41 1.45 16 40 H 0.07 0.80 6.99 -51.93 -0.36 0.43 16 41 H 0.08 1.33 6.42 -51.93 -0.33 1.00 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -34.44 372.57 -11.21 -45.65 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.56 Total: 12.75 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -6.13 Total: -5.53 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.18 Total: -66.36 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.44 -11.21 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.893 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds