Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99280 * 2 1 4 4 H 1.48502 * 109.46659 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47103 * 299.99752 * 3 2 1 6 6 H 1.48488 * 109.47555 * 60.00234 * 3 2 1 7 7 C 1.38807 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99881 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00232 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88464 * 336.34727 * 10 9 7 12 12 C 1.54143 * 113.72140 * 107.74673 * 10 9 7 13 13 C 1.53951 * 87.22709 * 139.15267 * 12 10 9 14 14 H 1.09002 * 113.66211 * 89.86561 * 13 12 10 15 15 N 1.46498 * 113.66353 * 220.82374 * 13 12 10 16 16 C 1.34769 * 120.00501 * 253.98819 * 15 13 12 17 17 O 1.21573 * 119.99783 * 359.97438 * 16 15 13 18 18 C 1.47694 * 120.00368 * 180.02562 * 16 15 13 19 19 C 1.39978 * 120.37900 * 359.97438 * 18 16 15 20 20 N 1.31397 * 121.15704 * 180.02562 * 19 18 16 21 21 C 1.32542 * 121.78998 * 359.97438 * 20 19 18 22 22 N 1.37576 * 133.56403 * 180.02562 * 21 20 19 23 23 H 0.97001 * 126.23972 * 359.97438 * 22 21 20 24 24 C 1.36168 * 107.52523 * 179.97438 * 22 21 20 25 25 N 1.30055 * 110.11044 * 0.02562 * 24 22 21 26 26 C 1.35774 * 109.43599 * 359.97438 * 25 24 22 27 27 C 1.39489 * 133.74488 * 180.02562 * 26 25 24 28 28 C 1.52911 * 113.66316 * 205.00369 * 10 9 7 29 29 C 1.52905 * 121.13569 * 346.34500 * 28 10 9 30 30 C 1.53949 * 86.78160 * 100.82144 * 29 28 10 31 31 C 1.52910 * 121.13797 * 94.91173 * 28 10 9 32 32 H 0.96994 * 120.01014 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99967 * 0.02562 * 9 7 2 34 34 H 1.08996 * 113.58053 * 24.57998 * 12 10 9 35 35 H 1.09003 * 113.63743 * 253.73460 * 12 10 9 36 36 H 0.97007 * 119.99889 * 73.98969 * 15 13 12 37 37 H 1.07994 * 119.42378 * 0.03515 * 19 18 16 38 38 H 1.08000 * 124.94644 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.97034 * 359.97438 * 27 26 25 40 40 H 1.08998 * 113.66059 * 215.29363 * 29 28 10 41 41 H 1.08997 * 113.66384 * 346.35032 * 29 28 10 42 42 H 1.08999 * 113.58060 * 270.12834 * 30 29 28 43 43 H 1.09003 * 113.64906 * 139.34694 * 30 29 28 44 44 H 1.08998 * 113.66495 * 13.64500 * 31 28 10 45 45 H 1.09000 * 113.66613 * 144.61933 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 1 3.0668 -3.5641 -0.4002 12 6 1.9958 -4.4076 1.3475 13 6 1.8253 -5.7018 0.5314 14 1 2.7682 -6.1864 0.2777 15 7 0.8427 -6.6290 1.0980 16 6 1.2555 -7.7497 1.7226 17 8 2.4433 -7.9914 1.8154 18 6 0.2649 -8.6847 2.2933 19 6 -1.1048 -8.4145 2.1904 20 7 -1.9992 -9.2354 2.6930 21 6 -1.6501 -10.3515 3.3168 22 7 -2.3615 -11.3626 3.9204 23 1 -3.3272 -11.4215 3.9906 24 6 -1.4630 -12.2656 4.4014 25 7 -0.2511 -11.8765 4.1341 26 6 -0.2931 -10.6970 3.4628 27 6 0.6838 -9.8485 2.9418 28 6 1.2659 -4.8234 -0.5882 29 6 -0.2399 -4.7144 -0.8301 30 6 0.1037 -4.4635 -2.3096 31 6 1.4201 -5.2206 -2.0567 32 1 -0.4851 0.8399 -0.0004 33 1 0.3557 -2.3881 0.0016 34 1 1.1231 -4.1531 1.9488 35 1 2.9265 -4.3684 1.9135 36 1 -0.1051 -6.4364 1.0236 37 1 -1.4320 -7.5157 1.6892 38 1 -1.7193 -13.1730 4.9281 39 1 1.7333 -10.0846 3.0372 40 1 -0.7791 -5.6459 -0.6581 41 1 -0.7015 -3.8589 -0.3371 42 1 0.2459 -3.4103 -2.5517 43 1 -0.5643 -4.9709 -3.0058 44 1 2.2847 -4.7694 -2.5435 45 1 1.3490 -6.2945 -2.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078634447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 90.418186 kcal Electronic energy + Delta-G solvation = -28867.287026 eV Core-core repulsion = 24886.588259 eV Total energy + Delta-G solvation = -3980.698767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.44284 -41.92579 -40.50291 -38.89665 -36.24276 -35.77772 -34.77808 -34.13233 -32.48148 -31.79308 -30.74940 -26.80933 -26.64113 -25.66002 -25.31145 -24.93139 -23.53959 -22.79155 -21.77064 -21.61142 -19.77025 -19.65035 -19.31581 -18.52654 -17.96931 -17.44339 -16.98164 -16.84414 -16.40899 -16.26819 -16.09450 -15.83276 -15.47725 -15.03739 -14.80612 -14.70206 -14.28813 -14.19145 -13.88834 -13.66581 -13.44684 -13.15862 -13.07004 -12.87521 -12.72350 -12.32636 -12.28814 -12.23154 -12.17258 -11.99919 -11.83241 -11.38372 -11.30607 -10.99061 -10.95269 -10.69651 -10.39085 -10.13497 -9.85846 -9.71986 -8.91970 -7.91975 -5.18189 -0.46399 -0.28946 1.48110 1.49295 1.50891 1.58336 1.66204 1.81543 2.02055 2.58468 2.70424 3.02738 3.32260 3.39299 3.52003 3.57503 3.61246 3.66516 3.73621 3.81197 3.97454 4.06021 4.12821 4.16457 4.24359 4.32483 4.59807 4.65770 4.69338 4.77559 4.81335 4.85367 4.90414 4.92101 5.06459 5.14524 5.18512 5.25701 5.29522 5.34082 5.54160 5.54509 5.67235 5.73136 6.11350 6.30955 6.49453 6.58908 6.68450 7.13761 7.38536 8.14948 8.39497 9.31072 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.002253 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.642566 B =12423.556075 C =12502.293595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.174 3.826 11 H 0.076 0.924 12 C -0.170 4.170 13 C 0.151 3.849 14 H 0.109 0.891 15 N -0.692 5.692 16 C 0.571 3.429 17 O -0.574 6.574 18 C -0.200 4.200 19 C 0.176 3.824 20 N -0.490 5.490 21 C 0.243 3.757 22 N -0.574 5.574 23 H 0.448 0.552 24 C 0.306 3.694 25 N -0.527 5.527 26 C -0.025 4.025 27 C 0.032 3.968 28 C -0.110 4.110 29 C -0.112 4.112 30 C -0.130 4.130 31 C -0.116 4.116 32 H 0.250 0.750 33 H 0.379 0.621 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.195 0.805 38 H 0.283 0.717 39 H 0.146 0.854 40 H 0.108 0.892 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -26.682 4.893 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.063 3.937 11 H 0.094 0.906 12 C -0.212 4.212 13 C 0.045 3.955 14 H 0.127 0.873 15 N -0.343 5.343 16 C 0.359 3.641 17 O -0.455 6.455 18 C -0.208 4.208 19 C 0.007 3.993 20 N -0.202 5.202 21 C 0.005 3.995 22 N -0.190 5.190 23 H 0.292 0.708 24 C 0.019 3.981 25 N -0.247 5.247 26 C -0.144 4.144 27 C 0.005 3.995 28 C -0.112 4.112 29 C -0.149 4.149 30 C -0.167 4.167 31 C -0.154 4.154 32 H 0.059 0.941 33 H 0.214 0.786 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.249 0.751 37 H 0.211 0.789 38 H 0.298 0.702 39 H 0.163 0.837 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.120 -26.977 5.105 28.364 hybrid contribution -0.469 1.716 0.058 1.780 sum -7.589 -25.261 5.163 26.877 Atomic orbital electron populations 1.69788 1.06305 1.25784 1.59739 1.25434 0.96317 1.00644 1.04082 0.85184 0.78298 0.80496 0.76472 1.19344 1.22213 1.22406 1.19681 0.91420 0.85392 1.40466 0.90899 1.42434 1.05590 1.00238 1.87059 1.21349 0.94858 0.83814 0.93668 0.90621 1.24166 1.01303 0.96478 0.99271 1.21990 0.92801 0.86972 0.93720 0.87297 1.45693 1.10957 1.21238 1.56384 1.18036 0.87537 0.81016 0.77518 1.90768 1.18513 1.76145 1.60046 1.20527 0.95261 0.97884 1.07176 1.23078 0.86551 0.96872 0.92820 1.66496 1.38991 1.02643 1.12114 1.19440 0.90378 0.91598 0.98076 1.42987 1.11923 1.17245 1.46848 0.70819 1.26709 0.81747 0.95478 0.94181 1.70518 1.24148 1.11203 1.18797 1.19719 0.93094 0.96624 1.04964 1.20884 0.99931 0.89509 0.89221 1.23367 0.97836 0.95729 0.94297 1.22492 0.93632 1.01925 0.96867 1.22632 0.97754 0.99797 0.96559 1.22714 0.97918 1.00613 0.94143 0.94139 0.78625 0.90951 0.92549 0.75080 0.78872 0.70173 0.83662 0.87367 0.92776 0.92752 0.89982 0.92157 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.24 -12.86 9.97 84.03 0.84 -12.02 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 9 N -0.71 -34.18 5.33 -321.25 -1.71 -35.89 16 10 C 0.17 6.58 4.36 45.35 0.20 6.78 16 11 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 12 C -0.17 -5.82 7.70 31.30 0.24 -5.58 16 13 C 0.15 4.26 4.09 45.28 0.19 4.44 16 14 H 0.11 3.25 7.50 -2.39 -0.02 3.24 16 15 N -0.69 -16.31 5.22 -444.17 -2.32 -18.63 16 16 C 0.57 15.25 7.77 86.74 0.67 15.92 16 17 O -0.57 -19.64 16.02 -3.95 -0.06 -19.70 16 18 C -0.20 -4.56 5.89 -20.01 -0.12 -4.67 16 19 C 0.18 3.30 10.69 85.18 0.91 4.21 16 20 N -0.49 -9.78 10.37 -191.77 -1.99 -11.76 16 21 C 0.24 4.58 8.45 133.91 1.13 5.71 16 22 N -0.57 -5.26 6.20 -195.75 -1.21 -6.47 16 23 H 0.45 0.88 8.96 -92.71 -0.83 0.05 16 24 C 0.31 2.38 12.97 180.03 2.33 4.72 16 25 N -0.53 -9.87 11.29 -191.95 -2.17 -12.04 16 26 C -0.02 -0.55 7.23 39.46 0.29 -0.26 16 27 C 0.03 0.78 9.75 22.92 0.22 1.00 16 28 C -0.11 -3.21 1.07 -52.31 -0.06 -3.26 16 29 C -0.11 -3.01 6.78 30.88 0.21 -2.80 16 30 C -0.13 -3.63 8.08 31.23 0.25 -3.38 16 31 C -0.12 -3.04 7.84 30.89 0.24 -2.80 16 32 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.38 19.17 5.92 -92.71 -0.55 18.62 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 7.55 5.01 -92.70 -0.46 7.09 16 37 H 0.19 2.43 6.39 -2.91 -0.02 2.41 16 38 H 0.28 -1.44 8.06 -2.91 -0.02 -1.46 16 39 H 0.15 3.67 7.72 -2.91 -0.02 3.65 16 40 H 0.11 2.09 6.99 -2.39 -0.02 2.08 16 41 H 0.05 1.79 6.42 -2.39 -0.02 1.77 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -77.80 372.57 0.10 -77.70 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.77 Total: 31.75 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 8.02 Total: 4.39 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -9.12 Total: -142.07 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.80 0.10 -77.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.117 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds