Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47148 * 269.99843 * 3 2 1 5 5 H 1.48501 * 109.47498 * 30.00250 * 3 2 1 6 6 H 1.48502 * 109.46816 * 150.00136 * 3 2 1 7 7 C 1.38817 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99748 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00033 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.88821 * 336.33851 * 10 9 7 12 12 C 1.53955 * 113.75033 * 107.76804 * 10 9 7 13 13 C 1.53945 * 87.29735 * 139.21853 * 12 10 9 14 14 H 1.09009 * 113.74594 * 220.78803 * 13 12 10 15 15 N 1.46497 * 113.66534 * 89.73927 * 13 12 10 16 16 C 1.34778 * 119.99739 * 107.81695 * 15 13 12 17 17 O 1.21568 * 120.00270 * 359.97438 * 16 15 13 18 18 C 1.47696 * 119.99570 * 180.02562 * 16 15 13 19 19 C 1.39976 * 120.38326 * 359.97438 * 18 16 15 20 20 N 1.31388 * 121.15675 * 180.02562 * 19 18 16 21 21 C 1.32550 * 121.79496 * 359.97438 * 20 19 18 22 22 N 1.37575 * 133.56941 * 180.31934 * 21 20 19 23 23 H 0.97001 * 126.24111 * 359.96025 * 22 21 20 24 24 C 1.36164 * 107.52677 * 180.02562 * 22 21 20 25 25 N 1.30063 * 110.11019 * 359.62888 * 24 22 21 26 26 C 1.35773 * 109.43224 * 0.22976 * 25 24 22 27 27 C 1.39491 * 133.74071 * 180.02562 * 26 25 24 28 28 C 1.52908 * 113.66384 * 204.99681 * 10 9 7 29 29 C 1.52911 * 121.13659 * 346.25250 * 28 10 9 30 30 C 1.53948 * 86.78155 * 100.81828 * 29 28 10 31 31 C 1.52906 * 121.13815 * 94.81389 * 28 10 9 32 32 H 0.97004 * 120.00231 * 359.97438 * 1 2 3 33 33 H 0.97000 * 119.99546 * 359.97438 * 9 7 2 34 34 H 1.09001 * 113.57463 * 24.60795 * 12 10 9 35 35 H 1.09008 * 113.57643 * 253.82121 * 12 10 9 36 36 H 0.96996 * 120.00149 * 287.81222 * 15 13 12 37 37 H 1.07998 * 119.42283 * 359.97438 * 19 18 16 38 38 H 1.08002 * 124.94835 * 179.89985 * 24 22 21 39 39 H 1.08001 * 120.97603 * 359.97438 * 27 26 25 40 40 H 1.08993 * 113.66730 * 215.29295 * 29 28 10 41 41 H 1.09007 * 113.65969 * 346.35243 * 29 28 10 42 42 H 1.09003 * 113.58384 * 270.13281 * 30 29 28 43 43 H 1.09001 * 113.64775 * 139.35323 * 30 29 28 44 44 H 1.08997 * 113.66104 * 13.65373 * 31 28 10 45 45 H 1.08996 * 113.66330 * 144.71316 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0668 -3.5639 -0.4038 12 6 1.9946 -4.4094 1.3400 13 6 1.8266 -5.7032 0.5229 14 1 1.0964 -6.3955 0.9422 15 7 3.0950 -6.3513 0.1805 16 6 3.4538 -7.4964 0.7941 17 8 2.7252 -7.9912 1.6320 18 6 4.7329 -8.1494 0.4492 19 6 5.5782 -7.5864 -0.5139 20 7 6.7192 -8.1547 -0.8327 21 6 7.1223 -9.2806 -0.2612 22 7 8.2437 -10.0655 -0.3994 23 1 8.9891 -9.9003 -0.9977 24 6 8.1158 -11.1174 0.4557 25 7 6.9973 -11.0260 1.1131 26 6 6.3313 -9.9106 0.7184 27 6 5.1138 -9.3350 1.0818 28 6 1.2660 -4.8227 -0.5945 29 6 -0.2401 -4.7141 -0.8354 30 6 0.1026 -4.4598 -2.3146 31 6 1.4196 -5.2166 -2.0640 32 1 -0.4851 0.8401 0.0004 33 1 0.3556 -2.3880 -0.0016 34 1 1.1210 -4.1565 1.9408 35 1 2.9248 -4.3693 1.9068 36 1 3.6766 -5.9564 -0.4879 37 1 5.2872 -6.6692 -1.0042 38 1 8.8400 -11.9098 0.5743 39 1 4.4837 -9.7931 1.8299 40 1 -0.7787 -5.6462 -0.6651 41 1 -0.7018 -3.8598 -0.3402 42 1 0.2441 -3.4060 -2.5545 43 1 -0.5655 -4.9660 -3.0114 44 1 2.2836 -4.7639 -2.5503 45 1 1.3474 -6.2900 -2.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078634448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 114.068459 kcal Electronic energy + Delta-G solvation = -28897.192550 eV Core-core repulsion = 24917.519336 eV Total energy + Delta-G solvation = -3979.673214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.78140 -40.71283 -39.45499 -38.00774 -35.07022 -34.13147 -34.03757 -32.49602 -31.59496 -30.36490 -29.56637 -25.52514 -25.27926 -24.30778 -24.15449 -24.06792 -22.30254 -22.04677 -20.99857 -20.09110 -19.08827 -18.42815 -17.93912 -17.34539 -16.71387 -16.47347 -16.14497 -15.68818 -15.19440 -14.90681 -14.75045 -14.62934 -14.38603 -13.88652 -13.82831 -13.41730 -13.36531 -13.01808 -12.59712 -12.46724 -12.00372 -11.80331 -11.70887 -11.57141 -11.50972 -11.34459 -10.89031 -10.83486 -10.60224 -10.26425 -10.17863 -10.07301 -9.86360 -9.67890 -9.54466 -9.39373 -9.31297 -9.04091 -8.85884 -8.70077 -6.98247 -5.80959 -3.09394 0.34949 0.45332 2.06199 2.29447 2.74068 2.99583 3.40948 3.46826 3.48181 3.56365 3.66259 3.94983 4.25966 4.45234 4.54569 4.57067 4.62685 4.78297 4.96107 5.02414 5.09441 5.24002 5.29107 5.30612 5.44053 5.62096 5.68400 5.70038 5.83925 5.95587 6.01382 6.02181 6.06469 6.11880 6.16699 6.31378 6.42041 6.47536 6.57859 6.58052 6.64543 6.88940 6.93222 7.04681 7.18646 7.36286 7.53302 7.66971 8.18411 8.37779 9.49479 10.06791 10.41396 11.41190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002443 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.836733 B =11456.711939 C =12241.098812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.191 3.809 11 H 0.076 0.924 12 C -0.175 4.175 13 C 0.129 3.871 14 H 0.098 0.902 15 N -0.696 5.696 16 C 0.569 3.431 17 O -0.535 6.535 18 C -0.195 4.195 19 C 0.177 3.823 20 N -0.484 5.484 21 C 0.255 3.745 22 N -0.588 5.588 23 H 0.431 0.569 24 C 0.275 3.725 25 N -0.480 5.480 26 C -0.009 4.009 27 C 0.048 3.952 28 C -0.121 4.121 29 C -0.109 4.109 30 C -0.131 4.131 31 C -0.127 4.127 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.172 0.828 38 H 0.228 0.772 39 H 0.157 0.843 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.044 -21.603 -3.702 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.094 0.906 12 C -0.217 4.217 13 C 0.024 3.976 14 H 0.116 0.884 15 N -0.345 5.345 16 C 0.355 3.645 17 O -0.413 6.413 18 C -0.203 4.203 19 C 0.007 3.993 20 N -0.196 5.196 21 C 0.019 3.981 22 N -0.203 5.203 23 H 0.271 0.729 24 C -0.013 4.013 25 N -0.199 5.199 26 C -0.128 4.128 27 C 0.020 3.980 28 C -0.124 4.124 29 C -0.147 4.147 30 C -0.169 4.169 31 C -0.164 4.164 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.234 0.766 37 H 0.188 0.812 38 H 0.244 0.756 39 H 0.174 0.826 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.846 -21.996 -3.068 26.171 hybrid contribution 0.767 1.350 -0.579 1.658 sum 14.613 -20.645 -3.647 25.555 Atomic orbital electron populations 1.69651 1.05084 1.25753 1.57352 1.24742 0.95497 0.97702 1.02789 0.86214 0.78708 0.83924 0.77473 1.21747 1.21804 1.20777 1.19272 0.91019 0.84179 1.43006 0.91178 1.42393 1.05922 0.99550 1.86718 1.21291 0.94322 0.84590 0.91946 0.90618 1.24288 1.02080 0.95271 1.00051 1.21768 0.84739 0.93612 0.97462 0.88361 1.45485 1.22479 1.24242 1.42305 1.17745 0.84818 0.80576 0.81354 1.90791 1.53236 1.64449 1.32810 1.20718 0.98269 0.98682 1.02645 1.22786 0.86885 0.97428 0.92178 1.66411 1.17185 1.08349 1.27661 1.19156 0.89559 0.92756 0.96648 1.42890 1.18574 1.21413 1.37418 0.72919 1.25557 0.96652 0.91122 0.87952 1.70512 1.05464 1.18286 1.25612 1.19567 0.97532 0.95814 0.99913 1.20874 0.91408 0.90953 0.94736 1.23603 0.97780 0.97980 0.93044 1.22450 0.93782 1.01663 0.96842 1.22738 0.96581 1.01449 0.96086 1.22653 0.98624 0.99292 0.95857 0.93448 0.77674 0.89474 0.92167 0.76572 0.81157 0.75625 0.82554 0.90737 0.90264 0.89181 0.92512 0.91687 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -16.56 5.33 -52.99 -0.28 -16.84 16 10 C 0.19 3.49 4.27 -67.48 -0.29 3.20 16 11 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.17 -2.99 7.69 -25.75 -0.20 -3.19 16 13 C 0.13 1.90 4.12 -67.48 -0.28 1.62 16 14 H 0.10 1.55 7.46 -51.92 -0.39 1.16 16 15 N -0.70 -8.61 5.00 -54.36 -0.27 -8.88 16 16 C 0.57 7.67 7.77 -12.40 -0.10 7.57 16 17 O -0.54 -9.06 16.00 5.31 0.08 -8.98 16 18 C -0.19 -2.23 5.89 -104.85 -0.62 -2.85 16 19 C 0.18 1.76 10.69 -17.09 -0.18 1.58 16 20 N -0.48 -5.21 10.36 -11.97 -0.12 -5.33 16 21 C 0.26 2.61 8.45 -155.64 -1.31 1.30 16 22 N -0.59 -3.57 6.20 -13.22 -0.08 -3.65 16 23 H 0.43 1.18 8.96 -40.82 -0.37 0.81 16 24 C 0.28 1.53 12.97 -89.70 -1.16 0.37 16 25 N -0.48 -4.85 11.29 -12.02 -0.14 -4.99 16 26 C -0.01 -0.10 7.23 -84.69 -0.61 -0.71 16 27 C 0.05 0.57 9.75 -38.58 -0.38 0.19 16 28 C -0.12 -1.84 0.92 -154.71 -0.14 -1.98 16 29 C -0.11 -1.69 7.47 -26.28 -0.20 -1.89 16 30 C -0.13 -1.96 8.08 -25.75 -0.21 -2.17 16 31 C -0.13 -1.70 7.49 -26.28 -0.20 -1.90 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.39 9.65 5.92 -40.82 -0.24 9.41 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.40 4.03 6.65 -40.82 -0.27 3.76 16 37 H 0.17 1.25 6.39 -52.49 -0.34 0.91 16 38 H 0.23 0.02 8.06 -52.49 -0.42 -0.40 16 39 H 0.16 1.83 7.72 -52.49 -0.41 1.43 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.42 6.42 -51.92 -0.33 1.08 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -34.62 375.18 -11.26 -45.88 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.69 Total: 12.62 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -6.12 Total: -5.85 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.17 Total: -66.18 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.62 -11.26 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.950 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds