Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.89013 * 27.11279 * 10 9 7 12 12 C 1.53957 * 113.66469 * 255.76878 * 10 9 7 13 13 C 1.53943 * 87.29592 * 270.26501 * 12 10 9 14 14 H 1.09002 * 113.66613 * 89.73743 * 13 12 10 15 15 N 1.46504 * 113.66052 * 220.79132 * 13 12 10 16 16 C 1.34772 * 120.00084 * 255.49185 * 15 13 12 17 17 O 1.21548 * 119.99925 * 0.02562 * 16 15 13 18 18 C 1.47968 * 120.00207 * 180.02562 * 16 15 13 19 19 C 1.39733 * 119.42882 * 179.97438 * 18 16 15 20 20 C 1.36989 * 119.59926 * 180.02562 * 19 18 16 21 21 C 1.39905 * 118.35984 * 0.02562 * 20 19 18 22 22 N 1.35427 * 133.80924 * 179.97438 * 21 20 19 23 23 C 1.30222 * 109.57782 * 180.02562 * 22 21 20 24 24 N 1.36004 * 110.17447 * 0.02562 * 23 22 21 25 25 H 0.96991 * 126.28716 * 179.97438 * 24 23 22 26 26 C 1.37943 * 107.41569 * 359.97438 * 24 23 22 27 27 N 1.31878 * 133.83078 * 180.30365 * 26 24 23 28 28 C 1.52909 * 113.66450 * 158.58396 * 10 9 7 29 29 C 1.52905 * 121.13976 * 323.85453 * 28 10 9 30 30 C 1.53951 * 86.78325 * 209.37453 * 29 28 10 31 31 C 1.52905 * 121.13949 * 215.28709 * 28 10 9 32 32 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.09007 * 113.57592 * 24.87199 * 12 10 9 35 35 H 1.09001 * 113.57931 * 155.57895 * 12 10 9 36 36 H 0.96998 * 119.99673 * 75.49918 * 15 13 12 37 37 H 1.07999 * 120.19994 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.82364 * 179.97438 * 20 19 18 39 39 H 1.07998 * 124.91459 * 179.97438 * 23 22 21 40 40 H 1.09005 * 113.66191 * 323.84405 * 29 28 10 41 41 H 1.08999 * 113.66553 * 94.89899 * 29 28 10 42 42 H 1.09001 * 113.58062 * 270.12702 * 30 29 28 43 43 H 1.09006 * 113.65276 * 139.34895 * 30 29 28 44 44 H 1.09000 * 113.66438 * 265.09198 * 31 28 10 45 45 H 1.08995 * 113.66448 * 36.15502 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0458 -3.5781 0.4489 12 6 2.0615 -4.3623 -1.3735 13 6 0.7680 -5.0698 -0.9304 14 1 -0.1395 -4.5229 -1.1862 15 7 0.7103 -6.4829 -1.3125 16 6 -0.0698 -6.8717 -2.3404 17 8 -0.7252 -6.0498 -2.9507 18 6 -0.1286 -8.2990 -2.7261 19 6 -0.9418 -8.6889 -3.7934 20 6 -0.9992 -10.0095 -4.1530 21 6 -0.2328 -10.9293 -3.4293 22 7 -0.0551 -12.2695 -3.5085 23 6 0.7788 -12.6545 -2.5853 24 7 1.1916 -11.5866 -1.8513 25 1 1.8118 -11.6076 -1.1058 26 6 0.5663 -10.4680 -2.3619 27 7 0.5941 -9.1859 -2.0546 28 6 1.2377 -4.8413 0.5068 29 6 0.2350 -4.6741 1.6490 30 6 0.5248 -6.1440 2.0031 31 6 1.8895 -5.9649 1.3135 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 1.9209 -3.6831 -2.2145 35 1 2.9044 -5.0391 -1.5130 36 1 1.2335 -7.1387 -0.8257 37 1 -1.5222 -7.9537 -4.3309 38 1 -1.6215 -10.3328 -4.9745 39 1 1.0960 -13.6743 -2.4251 40 1 0.5574 -3.9680 2.4143 41 1 -0.7867 -4.4984 1.3121 42 1 -0.1305 -6.8521 1.4958 43 1 0.5986 -6.3294 3.0747 44 1 2.1896 -6.8205 0.7086 45 1 2.6769 -5.6216 1.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078652432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 115.269475 kcal Electronic energy + Delta-G solvation = -29086.331942 eV Core-core repulsion = 25106.710808 eV Total energy + Delta-G solvation = -3979.621134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.75368 -40.70181 -39.47561 -37.83394 -35.07394 -34.34006 -33.89031 -32.44327 -31.58264 -30.37213 -29.44914 -25.62481 -25.54158 -24.41806 -24.08790 -23.55414 -22.61108 -22.04258 -20.66669 -20.11458 -19.08724 -18.67596 -17.62447 -17.40138 -16.98221 -16.16627 -15.93661 -15.43047 -15.32128 -15.14778 -14.83500 -14.70527 -14.26951 -13.94583 -13.62422 -13.26500 -12.98541 -12.90809 -12.63504 -12.42251 -12.09618 -11.90314 -11.69729 -11.65872 -11.52780 -11.48886 -10.91617 -10.83943 -10.64705 -10.27901 -10.18359 -10.03836 -9.88223 -9.65126 -9.57516 -9.38634 -9.32514 -8.97067 -8.82063 -8.61369 -6.95946 -5.76745 -3.06074 0.09525 0.86564 2.04372 2.14327 2.81449 3.16349 3.44529 3.49495 3.51176 3.62520 3.64215 3.92899 4.21693 4.54303 4.62300 4.67606 4.72695 4.75934 4.88618 4.95580 5.15790 5.24473 5.33118 5.37891 5.45983 5.63661 5.67420 5.70817 5.79143 5.91824 6.00923 6.03094 6.05833 6.10846 6.15731 6.25619 6.39966 6.49299 6.56146 6.64565 6.72407 6.76708 6.85558 7.08687 7.19216 7.27529 7.69502 7.72303 8.27361 8.41632 9.52697 10.09546 10.44160 11.45351 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.002439 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.988672 B =11478.069153 C =12148.487220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.186 3.814 11 H 0.067 0.933 12 C -0.182 4.182 13 C 0.150 3.850 14 H 0.117 0.883 15 N -0.693 5.693 16 C 0.567 3.433 17 O -0.524 6.524 18 C 0.127 3.873 19 C -0.124 4.124 20 C -0.027 4.027 21 C 0.020 3.980 22 N -0.491 5.491 23 C 0.284 3.716 24 N -0.588 5.588 25 H 0.431 0.569 26 C 0.235 3.765 27 N -0.455 5.455 28 C -0.125 4.125 29 C -0.113 4.113 30 C -0.142 4.142 31 C -0.110 4.110 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.227 0.773 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -27.576 -1.650 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.073 3.927 11 H 0.085 0.915 12 C -0.225 4.225 13 C 0.046 3.954 14 H 0.135 0.865 15 N -0.344 5.344 16 C 0.351 3.649 17 O -0.399 6.399 18 C -0.022 4.022 19 C -0.147 4.147 20 C -0.054 4.054 21 C -0.101 4.101 22 N -0.211 5.211 23 C -0.004 4.004 24 N -0.203 5.203 25 H 0.271 0.729 26 C -0.003 4.003 27 N -0.171 5.171 28 C -0.128 4.128 29 C -0.151 4.151 30 C -0.179 4.179 31 C -0.148 4.148 32 H 0.066 0.934 33 H 0.221 0.779 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.242 0.758 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.243 0.757 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.961 -27.016 -1.987 27.160 hybrid contribution 0.672 0.565 0.459 0.991 sum 2.633 -26.451 -1.529 26.625 Atomic orbital electron populations 1.69669 1.05089 1.25760 1.57173 1.24758 0.95513 0.97722 1.02730 0.86185 0.78608 0.83811 0.77525 1.21697 1.21806 1.20772 1.19244 0.91046 0.83868 1.43187 0.91040 1.42093 1.05778 0.99105 1.86911 1.20785 0.94602 0.85033 0.92261 0.91543 1.24317 0.95835 0.99655 1.02672 1.22389 1.00098 0.79395 0.93476 0.86525 1.45991 1.45294 1.10517 1.32555 1.17742 0.80300 0.85714 0.81171 1.90847 1.43885 1.52030 1.53162 1.21102 0.94410 0.92879 0.93766 1.21640 0.99405 0.96461 0.97236 1.20493 0.96193 0.90528 0.98184 1.19881 1.00668 0.91800 0.97765 1.70454 1.18158 1.10031 1.22475 1.25569 0.93078 0.93715 0.88017 1.42878 1.40516 1.05431 1.31486 0.72886 1.18870 0.97708 0.87810 0.95914 1.66203 1.21754 0.99555 1.29551 1.23444 0.98447 0.98042 0.92852 1.22555 0.99083 0.95449 0.98018 1.22872 0.97175 0.98044 0.99820 1.22519 0.96993 0.97074 0.98227 0.93426 0.77892 0.90732 0.91272 0.75756 0.82249 0.83250 0.75697 0.89351 0.91683 0.90927 0.91984 0.92244 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -17.21 5.12 -52.99 -0.27 -17.48 16 10 C 0.19 3.63 4.35 -67.48 -0.29 3.34 16 11 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 12 C -0.18 -3.28 7.68 -25.75 -0.20 -3.48 16 13 C 0.15 2.54 4.00 -67.48 -0.27 2.27 16 14 H 0.12 2.33 7.55 -51.93 -0.39 1.94 16 15 N -0.69 -10.05 5.29 -54.27 -0.29 -10.34 16 16 C 0.57 8.79 7.80 -12.28 -0.10 8.70 16 17 O -0.52 -9.81 15.93 5.32 0.08 -9.73 16 18 C 0.13 1.65 6.74 -82.97 -0.56 1.09 16 19 C -0.12 -1.39 9.55 -39.48 -0.38 -1.77 16 20 C -0.03 -0.26 10.16 -39.41 -0.40 -0.66 16 21 C 0.02 0.22 7.25 -84.58 -0.61 -0.40 16 22 N -0.49 -4.65 11.27 -11.92 -0.13 -4.79 16 23 C 0.28 1.52 12.96 -89.72 -1.16 0.35 16 24 N -0.59 -3.60 6.22 -13.20 -0.08 -3.69 16 25 H 0.43 1.29 8.96 -40.82 -0.37 0.93 16 26 C 0.23 2.45 8.46 -155.74 -1.32 1.13 16 27 N -0.45 -5.41 9.54 -8.83 -0.08 -5.49 16 28 C -0.13 -2.00 0.91 -154.71 -0.14 -2.14 16 29 C -0.11 -1.81 7.43 -26.28 -0.20 -2.00 16 30 C -0.14 -1.80 8.08 -25.75 -0.21 -2.00 16 31 C -0.11 -1.40 7.45 -26.28 -0.20 -1.60 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.39 10.19 7.74 -40.82 -0.32 9.88 16 34 H 0.07 1.53 8.14 -51.92 -0.42 1.11 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 5.16 5.97 -40.82 -0.24 4.91 16 37 H 0.16 1.66 7.61 -52.49 -0.40 1.26 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.23 -0.02 8.06 -52.49 -0.42 -0.44 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.67 6.42 -51.93 -0.33 0.33 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -34.60 377.23 -11.49 -46.09 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.82 Total: 14.02 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -6.27 Total: -4.36 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -0.13 Total: -69.02 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.60 -11.49 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078652432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.357 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds