Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47080 * 299.99713 * 3 2 1 6 6 H 1.48506 * 109.47201 * 60.00006 * 3 2 1 7 7 C 1.38814 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99639 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00484 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00349 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.88674 * 26.84435 * 10 9 7 12 12 C 1.53953 * 113.66543 * 255.49294 * 10 9 7 13 13 C 1.53951 * 87.29660 * 220.70011 * 12 10 9 14 14 H 1.08997 * 113.65904 * 270.16661 * 13 12 10 15 15 N 1.46501 * 113.65960 * 139.20896 * 13 12 10 16 16 C 1.34768 * 120.00201 * 104.50474 * 15 13 12 17 17 O 1.21549 * 120.00151 * 359.97438 * 16 15 13 18 18 C 1.47976 * 120.00220 * 179.97438 * 16 15 13 19 19 C 1.39730 * 119.42761 * 179.97438 * 18 16 15 20 20 C 1.36989 * 119.59485 * 180.02562 * 19 18 16 21 21 C 1.39893 * 118.36520 * 359.97438 * 20 19 18 22 22 N 1.35431 * 133.81362 * 180.02562 * 21 20 19 23 23 C 1.30224 * 109.57449 * 179.97438 * 22 21 20 24 24 N 1.35989 * 110.18189 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.29310 * 179.97438 * 24 23 22 26 26 C 1.37940 * 107.41478 * 359.97438 * 24 23 22 27 27 N 1.31883 * 133.83122 * 180.02562 * 26 24 23 28 28 C 1.52907 * 86.78187 * 24.73331 * 13 12 10 29 29 C 1.52906 * 121.14086 * 209.37494 * 28 13 12 30 30 C 1.53943 * 86.78565 * 209.37941 * 29 28 13 31 31 C 1.52913 * 121.13845 * 100.81510 * 28 13 12 32 32 H 0.96996 * 120.00036 * 0.02562 * 1 2 3 33 33 H 0.97011 * 119.99858 * 359.97438 * 9 7 2 34 34 H 1.08999 * 113.57602 * 106.09278 * 12 10 9 35 35 H 1.08998 * 113.57447 * 335.30629 * 12 10 9 36 36 H 0.97005 * 119.99827 * 284.49618 * 15 13 12 37 37 H 1.07997 * 120.20049 * 0.04985 * 19 18 16 38 38 H 1.08007 * 120.81875 * 180.02562 * 20 19 18 39 39 H 1.08000 * 124.90422 * 180.02562 * 23 22 21 40 40 H 1.08996 * 113.66523 * 323.85860 * 29 28 13 41 41 H 1.09004 * 113.66201 * 94.90448 * 29 28 13 42 42 H 1.09003 * 113.58315 * 270.13090 * 30 29 28 43 43 H 1.09006 * 113.58059 * 139.33910 * 30 29 28 44 44 H 1.09000 * 113.66161 * 265.09895 * 31 28 13 45 45 H 1.09007 * 113.65862 * 36.14939 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0456 -3.5757 0.4559 12 6 2.0622 -4.3691 -1.3631 13 6 1.8561 -5.6868 -0.5940 14 1 2.7869 -6.1770 -0.3088 15 7 0.9049 -6.5986 -1.2344 16 6 1.3529 -7.6838 -1.8962 17 8 2.5461 -7.9058 -1.9623 18 6 0.3921 -8.6052 -2.5425 19 6 0.8697 -9.7264 -3.2260 20 6 -0.0166 -10.5813 -3.8261 21 6 -1.3830 -10.2968 -3.7304 22 7 -2.5020 -10.9068 -4.1885 23 6 -3.5506 -10.2275 -3.8212 24 7 -3.1745 -9.1356 -3.1032 25 1 -3.7658 -8.4707 -2.7171 26 6 -1.7974 -9.1474 -3.0247 27 7 -0.9077 -8.3523 -2.4629 28 6 1.2396 -4.8399 0.5199 29 6 1.3208 -5.2773 1.9828 30 6 -0.0080 -4.5283 2.1903 31 6 -0.2767 -4.7385 0.6891 32 1 -0.4850 0.8400 -0.0004 33 1 0.3555 -2.3881 0.0005 34 1 3.0192 -4.3121 -1.8818 35 1 1.2189 -4.0987 -1.9986 36 1 -0.0474 -6.4214 -1.1819 37 1 1.9312 -9.9180 -3.2806 38 1 0.3308 -11.4540 -4.3591 39 1 -4.5714 -10.4931 -4.0534 40 1 1.2418 -6.3554 2.1221 41 1 2.1592 -4.8392 2.5245 42 1 0.1198 -3.4820 2.4681 43 1 -0.7095 -5.0557 2.8369 44 1 -0.7147 -3.8701 0.1972 45 1 -0.8048 -5.6654 0.4648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078652433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = 113.706724 kcal Electronic energy + Delta-G solvation = -29031.755484 eV Core-core repulsion = 25052.066584 eV Total energy + Delta-G solvation = -3979.688900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.73770 -40.66170 -39.50599 -37.87615 -34.89367 -34.31475 -33.97022 -32.51447 -31.57085 -30.41364 -29.66834 -25.61718 -25.48628 -24.40367 -24.15257 -23.59644 -22.19547 -21.99248 -20.56860 -20.43599 -19.02531 -18.47224 -17.80633 -17.52732 -16.83403 -16.18085 -16.11603 -15.46678 -15.23326 -15.09466 -14.73648 -14.65972 -14.48041 -14.05223 -13.61611 -13.24796 -13.03573 -12.90377 -12.68724 -12.42756 -12.07714 -11.82297 -11.64527 -11.51669 -11.49816 -11.23388 -10.93617 -10.82757 -10.71915 -10.30393 -10.16706 -10.03685 -9.86672 -9.78246 -9.56250 -9.42742 -9.31766 -8.96817 -8.86585 -8.62054 -6.98025 -5.81226 -3.09315 0.10088 0.86559 2.07367 2.15195 2.79127 3.13635 3.41252 3.47889 3.49453 3.62932 3.63670 3.94519 4.22085 4.55882 4.63269 4.67690 4.75345 4.80196 4.94815 5.06194 5.22594 5.24585 5.26270 5.38314 5.44769 5.66454 5.68107 5.69609 5.89236 5.92598 5.98199 5.99980 6.06825 6.15204 6.22236 6.32637 6.39911 6.52592 6.56007 6.61212 6.63514 6.85634 6.92760 7.06481 7.20903 7.28808 7.67392 7.69284 8.21667 8.37762 9.49560 10.06294 10.41301 11.41229 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002485 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.933013 B =11263.659169 C =11623.324785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.707 5.707 10 C 0.193 3.807 11 H 0.081 0.919 12 C -0.173 4.173 13 C 0.127 3.873 14 H 0.112 0.888 15 N -0.688 5.688 16 C 0.570 3.430 17 O -0.533 6.533 18 C 0.125 3.875 19 C -0.124 4.124 20 C -0.027 4.027 21 C 0.021 3.979 22 N -0.492 5.492 23 C 0.286 3.714 24 N -0.587 5.587 25 H 0.432 0.568 26 C 0.235 3.765 27 N -0.452 5.452 28 C -0.117 4.117 29 C -0.126 4.126 30 C -0.130 4.130 31 C -0.117 4.117 32 H 0.255 0.745 33 H 0.387 0.613 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.227 0.773 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -22.142 -4.302 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.346 5.346 10 C 0.080 3.920 11 H 0.099 0.901 12 C -0.215 4.215 13 C 0.023 3.977 14 H 0.130 0.870 15 N -0.337 5.337 16 C 0.354 3.646 17 O -0.409 6.409 18 C -0.024 4.024 19 C -0.148 4.148 20 C -0.055 4.055 21 C -0.100 4.100 22 N -0.212 5.212 23 C -0.002 4.002 24 N -0.202 5.202 25 H 0.273 0.727 26 C -0.003 4.003 27 N -0.168 5.168 28 C -0.120 4.120 29 C -0.163 4.163 30 C -0.167 4.167 31 C -0.155 4.155 32 H 0.064 0.936 33 H 0.222 0.778 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.474 -22.122 -4.356 23.458 hybrid contribution -0.671 1.346 0.086 1.507 sum -7.145 -20.776 -4.270 22.381 Atomic orbital electron populations 1.69664 1.05102 1.25596 1.57706 1.24739 0.95511 0.97712 1.02873 0.86126 0.78881 0.84113 0.77134 1.20501 1.21917 1.21909 1.19345 0.91166 0.84077 1.42577 0.90977 1.42355 1.05843 0.99476 1.86876 1.21057 0.94486 0.84324 0.92148 0.90102 1.24283 1.01823 0.94862 1.00573 1.22403 0.92883 0.88137 0.94294 0.87040 1.45878 1.11523 1.23981 1.52357 1.17722 0.87002 0.80923 0.78956 1.90796 1.15133 1.74299 1.60689 1.21053 0.88097 0.95362 0.97906 1.21603 1.02226 0.93722 0.97224 1.20477 0.88621 0.99362 0.97024 1.19888 0.94527 0.94750 1.00868 1.70464 0.96622 1.29362 1.24781 1.25580 1.00491 0.83126 0.91014 1.42903 1.04718 1.25403 1.47164 0.72739 1.18872 0.85475 0.95316 1.00603 1.66206 1.01178 1.29950 1.19496 1.23556 0.97109 0.97972 0.93314 1.22708 0.98501 0.99205 0.95920 1.22734 0.96681 1.01554 0.95780 1.22442 0.94351 1.01340 0.97382 0.93557 0.77764 0.91947 0.90134 0.75430 0.82344 0.83278 0.75653 0.90968 0.91375 0.89114 0.92535 0.90276 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.88 5.35 -52.99 -0.28 -17.16 16 10 C 0.19 3.71 4.35 -67.48 -0.29 3.42 16 11 H 0.08 1.57 8.12 -51.93 -0.42 1.14 16 12 C -0.17 -3.09 7.68 -25.75 -0.20 -3.29 16 13 C 0.13 1.98 4.08 -67.48 -0.28 1.70 16 14 H 0.11 1.76 7.54 -51.93 -0.39 1.37 16 15 N -0.69 -9.85 5.28 -54.27 -0.29 -10.13 16 16 C 0.57 8.41 7.80 -12.27 -0.10 8.32 16 17 O -0.53 -9.06 15.93 5.32 0.08 -8.97 16 18 C 0.12 1.60 6.74 -82.96 -0.56 1.04 16 19 C -0.12 -1.34 9.55 -39.48 -0.38 -1.72 16 20 C -0.03 -0.27 10.16 -39.42 -0.40 -0.67 16 21 C 0.02 0.23 7.25 -84.58 -0.61 -0.38 16 22 N -0.49 -4.79 11.27 -11.93 -0.13 -4.92 16 23 C 0.29 1.66 12.96 -89.73 -1.16 0.50 16 24 N -0.59 -4.01 6.22 -13.20 -0.08 -4.09 16 25 H 0.43 1.71 8.96 -40.82 -0.37 1.35 16 26 C 0.24 2.56 8.46 -155.74 -1.32 1.25 16 27 N -0.45 -5.58 9.54 -8.82 -0.08 -5.66 16 28 C -0.12 -1.86 1.06 -154.71 -0.16 -2.02 16 29 C -0.13 -1.83 7.84 -26.29 -0.21 -2.03 16 30 C -0.13 -1.98 8.08 -25.75 -0.21 -2.19 16 31 C -0.12 -1.80 6.77 -26.28 -0.18 -1.98 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.39 9.71 5.87 -40.82 -0.24 9.47 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.41 5.54 6.23 -40.82 -0.25 5.28 16 37 H 0.16 1.53 7.61 -52.49 -0.40 1.13 16 38 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.23 0.09 8.06 -52.49 -0.42 -0.33 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.40 6.43 -51.93 -0.33 1.07 16 45 H 0.07 0.95 6.96 -51.93 -0.36 0.59 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -33.80 374.62 -11.43 -45.23 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -5.70 Total: 14.78 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -6.30 Total: -5.13 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.15 Total: -68.63 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.80 -11.43 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078652433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.942 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds