Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00166 * 2 1 4 4 H 1.48494 * 109.46931 * 269.99744 * 3 2 1 5 5 H 1.48495 * 109.47317 * 30.00014 * 3 2 1 6 6 H 1.48500 * 109.47035 * 149.99705 * 3 2 1 7 7 C 1.38814 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00078 * 0.02562 * 7 2 1 9 9 N 1.36945 * 120.00195 * 179.97438 * 7 2 1 10 10 C 1.46492 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95638 * 336.40672 * 10 9 7 12 12 C 1.53957 * 113.65902 * 107.81807 * 10 9 7 13 13 C 1.53948 * 87.29686 * 89.73656 * 12 10 9 14 14 H 1.08998 * 113.74669 * 139.21661 * 13 12 10 15 15 N 1.46508 * 113.66423 * 270.26262 * 13 12 10 16 16 C 1.34773 * 119.99818 * 252.19151 * 15 13 12 17 17 O 1.21542 * 120.00171 * 359.97438 * 16 15 13 18 18 C 1.47968 * 120.00002 * 179.97438 * 16 15 13 19 19 C 1.39734 * 119.43004 * 179.97438 * 18 16 15 20 20 C 1.36990 * 119.60347 * 179.97438 * 19 18 16 21 21 C 1.39899 * 118.35607 * 0.02562 * 20 19 18 22 22 N 1.35437 * 133.81142 * 179.97438 * 21 20 19 23 23 C 1.30216 * 109.57472 * 180.02562 * 22 21 20 24 24 N 1.35990 * 110.18124 * 0.02562 * 23 22 21 25 25 H 0.96998 * 126.29345 * 179.97438 * 24 23 22 26 26 C 1.37943 * 107.41808 * 0.02562 * 24 23 22 27 27 N 1.31885 * 133.82888 * 180.28513 * 26 24 23 28 28 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 29 29 C 1.52910 * 121.13680 * 100.81909 * 28 13 12 30 30 C 1.53949 * 86.78077 * 100.82535 * 29 28 13 31 31 C 1.52913 * 121.13887 * 209.38757 * 28 13 12 32 32 H 0.96997 * 119.99721 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99527 * 0.02562 * 9 7 2 34 34 H 1.09001 * 113.57949 * 204.33552 * 12 10 9 35 35 H 1.08996 * 113.58143 * 335.13213 * 12 10 9 36 36 H 0.96995 * 120.00007 * 72.17985 * 15 13 12 37 37 H 1.07998 * 120.19720 * 359.95847 * 19 18 16 38 38 H 1.07989 * 120.82200 * 179.97438 * 20 19 18 39 39 H 1.07999 * 124.90553 * 180.02562 * 23 22 21 40 40 H 1.09006 * 113.66074 * 215.29190 * 29 28 13 41 41 H 1.08994 * 113.66448 * 346.35155 * 29 28 13 42 42 H 1.09009 * 113.57633 * 270.12923 * 30 29 28 43 43 H 1.08992 * 113.65542 * 139.35069 * 30 29 28 44 44 H 1.08992 * 113.66210 * 13.64580 * 31 28 13 45 45 H 1.08991 * 113.66466 * 144.61413 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0011 11 1 3.5281 -3.2985 0.4040 12 6 4.7941 -2.7919 -1.3413 13 6 6.0275 -2.0383 -0.8115 14 1 6.9745 -2.5188 -1.0571 15 7 6.0187 -0.6060 -1.1194 16 6 6.8609 -0.1112 -2.0480 17 8 7.6281 -0.8531 -2.6296 18 6 6.8516 1.3353 -2.3595 19 6 7.7303 1.8356 -3.3239 20 6 7.7243 3.1741 -3.6155 21 6 6.8284 3.9999 -2.9281 22 7 6.5612 5.3272 -2.9626 23 6 5.6189 5.6049 -2.1079 24 7 5.2186 4.4742 -1.4671 25 1 4.5317 4.4135 -0.7850 26 6 5.9698 3.4297 -1.9646 27 7 6.0078 2.1343 -1.7198 28 6 5.5184 -2.3672 0.5924 29 6 6.1217 -3.5145 1.4035 30 6 6.9202 -2.4409 2.1651 31 6 5.8123 -1.4451 1.7763 32 1 -0.4849 0.8400 -0.0004 33 1 3.8647 -0.3622 -0.0004 34 1 4.9679 -3.8564 -1.4986 35 1 4.3221 -2.3086 -2.1967 36 1 5.4066 -0.0138 -0.6552 37 1 8.4102 1.1711 -3.8363 38 1 8.3952 3.5819 -4.3570 39 1 5.2139 6.5907 -1.9332 40 1 5.3958 -4.0413 2.0230 41 1 6.7447 -4.1869 0.8139 42 1 7.8869 -2.2153 1.7148 43 1 6.9857 -2.6234 3.2376 44 1 6.1881 -0.4646 1.4843 45 1 4.9989 -1.3891 2.4996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078652434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 122.669823 kcal Electronic energy + Delta-G solvation = -30303.597605 eV Core-core repulsion = 26324.297375 eV Total energy + Delta-G solvation = -3979.300231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.58388 -40.84821 -39.43946 -37.77564 -35.46455 -34.12009 -33.69239 -32.44438 -31.42174 -30.57649 -29.96464 -25.70362 -25.49737 -24.48656 -24.15120 -23.46594 -22.43055 -21.84631 -20.62345 -20.21989 -19.12288 -18.79581 -17.73696 -17.35688 -17.23532 -16.01326 -15.81205 -15.34482 -15.30174 -15.14726 -14.81144 -14.58870 -14.56240 -13.91781 -13.74794 -13.38091 -13.03697 -12.85453 -12.73109 -12.58530 -12.20105 -12.02288 -11.97061 -11.56765 -11.49410 -11.35872 -11.11831 -11.06993 -10.79712 -10.36465 -10.29428 -10.04658 -9.91245 -9.74441 -9.50047 -9.40211 -9.17258 -8.95434 -8.86480 -8.63904 -7.37845 -5.88529 -3.24049 0.24488 1.00528 2.24601 2.29688 2.88208 3.10338 3.21707 3.25596 3.26328 3.74696 3.77081 4.08031 4.32945 4.45644 4.59052 4.67790 4.80275 4.83938 4.87305 4.93043 5.02915 5.20420 5.30288 5.35445 5.48596 5.53442 5.57385 5.74308 5.78130 5.81843 5.86142 5.90082 6.01021 6.04446 6.10144 6.20365 6.26721 6.29066 6.49499 6.57326 6.61998 6.75069 6.78273 6.91178 7.35403 7.42067 7.71359 7.89752 8.24942 8.31220 9.07859 9.80351 9.98874 11.29601 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.005155 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.724603 B = 5430.219049 C = 7456.265044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.869 3.131 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.095 0.905 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.076 0.924 12 C -0.183 4.183 13 C 0.145 3.855 14 H 0.099 0.901 15 N -0.681 5.681 16 C 0.576 3.424 17 O -0.534 6.534 18 C 0.121 3.879 19 C -0.123 4.123 20 C -0.028 4.028 21 C 0.024 3.976 22 N -0.492 5.492 23 C 0.288 3.712 24 N -0.588 5.588 25 H 0.432 0.568 26 C 0.237 3.763 27 N -0.450 5.450 28 C -0.135 4.135 29 C -0.101 4.101 30 C -0.140 4.140 31 C -0.121 4.121 32 H 0.260 0.740 33 H 0.357 0.643 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.410 0.590 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.228 0.772 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.591 5.566 -0.952 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.699 3.301 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.113 0.887 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.094 0.906 12 C -0.225 4.225 13 C 0.040 3.960 14 H 0.117 0.883 15 N -0.333 5.333 16 C 0.360 3.640 17 O -0.410 6.410 18 C -0.028 4.028 19 C -0.146 4.146 20 C -0.056 4.056 21 C -0.097 4.097 22 N -0.212 5.212 23 C 0.000 4.000 24 N -0.202 5.202 25 H 0.272 0.728 26 C -0.001 4.001 27 N -0.165 5.165 28 C -0.137 4.137 29 C -0.139 4.139 30 C -0.178 4.178 31 C -0.159 4.159 32 H 0.070 0.930 33 H 0.191 0.809 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.244 0.756 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.694 5.240 -1.266 16.594 hybrid contribution -0.253 1.552 0.477 1.643 sum 15.441 6.792 -0.789 16.887 Atomic orbital electron populations 1.69676 1.04920 1.25709 1.57363 1.24627 0.95150 0.96860 1.02107 0.86706 0.79372 0.86128 0.77898 1.20854 1.21683 1.19972 1.19123 0.80215 0.94898 1.42913 0.88714 1.42504 1.03888 1.01356 1.88790 1.21006 0.89412 0.89902 0.92395 0.90590 1.24266 0.96910 0.99559 1.01726 1.21601 0.99575 0.80319 0.94554 0.88327 1.45646 1.38531 1.09491 1.39593 1.17670 0.80706 0.85595 0.79995 1.90769 1.40482 1.58350 1.51415 1.20944 0.93499 0.93270 0.95116 1.21555 0.99736 0.95472 0.97872 1.20437 0.96033 0.91403 0.97676 1.19886 0.99419 0.91578 0.98850 1.70463 1.16181 1.12885 1.21685 1.25589 0.92840 0.91960 0.89619 1.42995 1.34268 1.06321 1.36613 0.72818 1.18861 0.95698 0.88292 0.97254 1.66208 1.21516 1.02206 1.26593 1.23489 0.99012 0.98432 0.92812 1.22472 0.98719 0.95127 0.97564 1.22849 0.97785 0.97307 0.99813 1.22562 0.98417 0.97110 0.97789 0.93022 0.80878 0.89710 0.90713 0.75101 0.82341 0.83223 0.75563 0.89358 0.91365 0.90695 0.91760 0.92281 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.97 55.49 0.78 -27.69 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.87 21.01 27.74 -169.99 -4.71 16.30 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.21 6.52 56.52 0.37 -5.84 16 7 C -0.24 -6.59 10.45 -15.05 -0.16 -6.75 16 8 H 0.10 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.72 -16.46 4.78 -52.99 -0.25 -16.71 16 10 C 0.18 3.44 4.36 -67.48 -0.29 3.15 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.18 -3.12 7.68 -25.75 -0.20 -3.32 16 13 C 0.14 2.34 4.12 -67.48 -0.28 2.07 16 14 H 0.10 1.55 7.46 -51.93 -0.39 1.16 16 15 N -0.68 -11.90 4.68 -54.27 -0.25 -12.15 16 16 C 0.58 9.91 7.80 -12.27 -0.10 9.82 16 17 O -0.53 -9.70 15.89 5.33 0.08 -9.62 16 18 C 0.12 1.92 6.74 -82.97 -0.56 1.36 16 19 C -0.12 -1.59 9.55 -39.48 -0.38 -1.97 16 20 C -0.03 -0.34 10.16 -39.41 -0.40 -0.74 16 21 C 0.02 0.34 7.25 -84.57 -0.61 -0.28 16 22 N -0.49 -6.13 11.27 -11.93 -0.13 -6.26 16 23 C 0.29 2.69 12.96 -89.74 -1.16 1.53 16 24 N -0.59 -6.93 6.22 -13.21 -0.08 -7.01 16 25 H 0.43 4.45 8.96 -40.82 -0.37 4.09 16 26 C 0.24 3.59 8.46 -155.73 -1.32 2.27 16 27 N -0.45 -7.59 9.54 -8.82 -0.08 -7.68 16 28 C -0.14 -2.08 0.78 -154.71 -0.12 -2.20 16 29 C -0.10 -1.25 7.84 -26.28 -0.21 -1.45 16 30 C -0.14 -1.72 8.08 -25.75 -0.21 -1.93 16 31 C -0.12 -1.83 7.27 -26.28 -0.19 -2.03 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.36 8.05 3.20 -40.82 -0.13 7.92 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.41 7.72 5.25 -40.82 -0.21 7.51 16 37 H 0.16 1.77 7.61 -52.49 -0.40 1.37 16 38 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.23 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -34.37 371.46 -11.05 -45.42 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -5.71 Total: 20.13 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -6.28 Total: -0.32 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -0.03 Total: -77.51 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.37 -11.05 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078652434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.090 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds