Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86788 * 120.00261 * 2 1 4 4 H 1.48508 * 109.47225 * 240.00082 * 3 2 1 5 5 H 1.48498 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47245 * 120.00216 * 3 2 1 7 7 C 1.38821 * 119.99416 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99549 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00261 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.88034 * 336.34468 * 10 9 7 12 12 C 1.53953 * 113.75274 * 107.76832 * 10 9 7 13 13 C 1.53941 * 87.29756 * 139.21820 * 12 10 9 14 14 H 1.09004 * 113.74770 * 220.78854 * 13 12 10 15 15 N 1.46498 * 113.66446 * 89.74309 * 13 12 10 16 16 C 1.34776 * 120.00216 * 107.80980 * 15 13 12 17 17 O 1.21538 * 119.99713 * 0.02562 * 16 15 13 18 18 C 1.47973 * 119.99727 * 180.02562 * 16 15 13 19 19 C 1.39729 * 119.42635 * 179.97438 * 18 16 15 20 20 C 1.36990 * 119.60193 * 179.97438 * 19 18 16 21 21 C 1.39893 * 118.35722 * 0.02562 * 20 19 18 22 22 N 1.35436 * 133.80949 * 179.97438 * 21 20 19 23 23 C 1.30219 * 109.57461 * 179.78376 * 22 21 20 24 24 N 1.35993 * 110.18109 * 0.39704 * 23 22 21 25 25 H 0.97001 * 126.29639 * 179.88001 * 24 23 22 26 26 C 1.37946 * 107.41128 * 359.60730 * 24 23 22 27 27 N 1.31886 * 133.82510 * 180.22451 * 26 24 23 28 28 C 1.52908 * 86.78486 * 335.26652 * 13 12 10 29 29 C 1.52904 * 121.14004 * 259.18067 * 28 13 12 30 30 C 1.53946 * 86.78339 * 209.37762 * 29 28 13 31 31 C 1.52913 * 121.13997 * 150.61410 * 28 13 12 32 32 H 0.97001 * 119.99930 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00027 * 359.97438 * 9 7 2 34 34 H 1.09003 * 113.57306 * 24.60841 * 12 10 9 35 35 H 1.09004 * 113.57822 * 253.82870 * 12 10 9 36 36 H 0.97007 * 119.99825 * 287.81254 * 15 13 12 37 37 H 1.08003 * 120.19696 * 359.97438 * 19 18 16 38 38 H 1.07996 * 120.82029 * 179.97438 * 20 19 18 39 39 H 1.08001 * 124.90683 * 180.26357 * 23 22 21 40 40 H 1.08994 * 113.66453 * 323.85098 * 29 28 13 41 41 H 1.08999 * 113.66250 * 94.90915 * 29 28 13 42 42 H 1.09007 * 113.58424 * 270.12810 * 30 29 28 43 43 H 1.09002 * 113.65102 * 139.34885 * 30 29 28 44 44 H 1.08997 * 113.66430 * 265.09548 * 31 28 13 45 45 H 1.09010 * 113.65820 * 36.14948 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 1 3.0664 -3.5640 -0.4035 12 6 1.9954 -4.4089 1.3414 13 6 1.8267 -5.7031 0.5250 14 1 1.0969 -6.3951 0.9451 15 7 3.0948 -6.3514 0.1819 16 6 3.4542 -7.4962 0.7958 17 8 2.7259 -7.9909 1.6336 18 6 4.7353 -8.1506 0.4496 19 6 5.0963 -9.3369 1.0938 20 6 6.2814 -9.9461 0.7757 21 6 7.0956 -9.3503 -0.1934 22 7 8.2953 -9.6694 -0.7350 23 6 8.6266 -8.7733 -1.6198 24 7 7.6657 -7.8143 -1.6990 25 1 7.6757 -7.0380 -2.2805 26 6 6.6711 -8.1518 -0.8047 27 7 5.5214 -7.6010 -0.4667 28 6 1.2653 -4.8230 -0.5924 29 6 -0.2409 -4.7144 -0.8322 30 6 0.1006 -4.4608 -2.3117 31 6 1.4178 -5.2175 -2.0618 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3881 0.0002 34 1 1.1223 -4.1557 1.9428 35 1 2.9260 -4.3686 1.9075 36 1 3.6760 -5.9567 -0.4871 37 1 4.4450 -9.7708 1.8380 38 1 6.5800 -10.8632 1.2616 39 1 9.5345 -8.7884 -2.2046 40 1 -0.7794 -5.6464 -0.6611 41 1 -0.7022 -3.8599 -0.3370 42 1 0.2420 -3.4070 -2.5522 43 1 -0.5679 -4.9673 -3.0078 44 1 2.2815 -4.7650 -2.5490 45 1 1.3455 -6.2911 -2.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078652435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 114.387595 kcal Electronic energy + Delta-G solvation = -29064.252810 eV Core-core repulsion = 25084.593435 eV Total energy + Delta-G solvation = -3979.659375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74326 -40.67671 -39.50269 -37.89070 -35.05201 -34.25822 -33.95170 -32.36051 -31.55100 -30.41647 -29.62602 -25.61166 -25.37026 -24.49097 -24.10679 -23.62708 -22.19281 -22.01618 -21.10530 -20.04514 -19.03669 -18.43208 -17.79846 -17.53306 -16.88697 -16.16535 -15.93108 -15.48647 -15.22430 -15.06030 -14.78651 -14.75015 -14.39119 -13.85238 -13.69824 -13.45279 -13.14843 -12.90910 -12.53382 -12.42416 -11.98756 -11.77576 -11.68986 -11.64961 -11.50593 -11.34062 -10.88232 -10.82976 -10.60379 -10.32468 -10.20624 -10.09071 -9.84363 -9.66753 -9.57301 -9.37248 -9.32282 -8.97755 -8.85122 -8.64484 -6.97999 -5.80769 -3.09071 0.09293 0.85906 2.06873 2.14413 2.77821 3.06796 3.40951 3.45966 3.46643 3.61853 3.62771 3.93555 4.20845 4.55557 4.61478 4.66678 4.74027 4.80996 5.04801 5.11025 5.23268 5.25997 5.30024 5.37683 5.44535 5.65908 5.67417 5.70988 5.85001 5.96817 6.03583 6.07670 6.12604 6.14738 6.18178 6.32825 6.43463 6.49699 6.58200 6.60343 6.66141 6.90047 6.94492 7.05059 7.20354 7.27749 7.65005 7.66665 8.20364 8.38129 9.49599 10.07069 10.42170 11.41441 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.002715 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.399117 B =10309.609952 C =11279.575455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.707 5.707 10 C 0.192 3.808 11 H 0.075 0.925 12 C -0.174 4.174 13 C 0.126 3.874 14 H 0.099 0.901 15 N -0.680 5.680 16 C 0.573 3.427 17 O -0.532 6.532 18 C 0.125 3.875 19 C -0.124 4.124 20 C -0.027 4.027 21 C 0.022 3.978 22 N -0.493 5.493 23 C 0.286 3.714 24 N -0.587 5.587 25 H 0.432 0.568 26 C 0.236 3.764 27 N -0.451 5.451 28 C -0.121 4.121 29 C -0.109 4.109 30 C -0.131 4.131 31 C -0.125 4.125 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.227 0.773 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.414 -19.616 -4.821 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.216 4.216 13 C 0.021 3.979 14 H 0.117 0.883 15 N -0.329 5.329 16 C 0.357 3.643 17 O -0.408 6.408 18 C -0.024 4.024 19 C -0.148 4.148 20 C -0.055 4.055 21 C -0.100 4.100 22 N -0.212 5.212 23 C -0.002 4.002 24 N -0.202 5.202 25 H 0.273 0.727 26 C -0.003 4.003 27 N -0.167 5.167 28 C -0.123 4.123 29 C -0.147 4.147 30 C -0.169 4.169 31 C -0.163 4.163 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.200 -19.710 -4.402 24.126 hybrid contribution 0.470 1.543 -0.513 1.692 sum 13.669 -18.167 -4.914 23.260 Atomic orbital electron populations 1.69641 1.05082 1.25867 1.57312 1.24733 0.95490 0.97665 1.02779 0.86288 0.78560 0.83617 0.77818 1.21314 1.21699 1.21273 1.19236 0.90991 0.84223 1.43112 0.91277 1.42380 1.05898 0.99531 1.86751 1.21282 0.94320 0.84565 0.91931 0.90672 1.24277 1.02039 0.95229 1.00046 1.21814 0.84886 0.93676 0.97564 0.88350 1.45470 1.22051 1.23697 1.41633 1.17667 0.84149 0.80951 0.81561 1.90799 1.52311 1.64734 1.32917 1.20997 0.94127 0.93908 0.93325 1.21599 0.97050 0.95159 1.00949 1.20474 0.91648 0.99524 0.93833 1.19887 0.94412 0.95471 1.00213 1.70465 1.12574 1.26882 1.11322 1.25580 0.94096 0.84032 0.96476 1.42909 1.16845 1.25313 1.35110 0.72723 1.18867 0.91097 0.94800 0.95498 1.66207 1.02636 1.33291 1.14582 1.23588 0.97718 0.97969 0.93068 1.22446 0.93748 1.01662 0.96821 1.22742 0.96578 1.01433 0.96097 1.22635 0.98522 0.99229 0.95908 0.93389 0.77678 0.89408 0.92220 0.75417 0.82344 0.83272 0.75658 0.90718 0.90235 0.89192 0.92509 0.91792 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -16.94 5.33 -52.99 -0.28 -17.23 16 10 C 0.19 3.67 4.27 -67.48 -0.29 3.39 16 11 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 12 C -0.17 -3.10 7.68 -25.75 -0.20 -3.30 16 13 C 0.13 1.97 4.12 -67.49 -0.28 1.69 16 14 H 0.10 1.60 7.46 -51.93 -0.39 1.21 16 15 N -0.68 -9.64 5.03 -54.28 -0.27 -9.91 16 16 C 0.57 8.35 7.80 -12.27 -0.10 8.25 16 17 O -0.53 -8.99 15.89 5.33 0.08 -8.90 16 18 C 0.13 1.58 6.74 -82.97 -0.56 1.02 16 19 C -0.12 -1.32 9.55 -39.48 -0.38 -1.69 16 20 C -0.03 -0.26 10.16 -39.41 -0.40 -0.66 16 21 C 0.02 0.23 7.25 -84.58 -0.61 -0.38 16 22 N -0.49 -4.73 11.27 -11.93 -0.13 -4.87 16 23 C 0.29 1.63 12.96 -89.73 -1.16 0.47 16 24 N -0.59 -3.94 6.22 -13.21 -0.08 -4.02 16 25 H 0.43 1.67 8.96 -40.82 -0.37 1.30 16 26 C 0.24 2.53 8.46 -155.73 -1.32 1.21 16 27 N -0.45 -5.48 9.54 -8.82 -0.08 -5.56 16 28 C -0.12 -1.94 0.92 -154.71 -0.14 -2.08 16 29 C -0.11 -1.74 7.47 -26.29 -0.20 -1.93 16 30 C -0.13 -2.03 8.08 -25.75 -0.21 -2.24 16 31 C -0.13 -1.82 7.49 -26.28 -0.20 -2.01 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.39 9.81 5.92 -40.82 -0.24 9.57 16 34 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.41 5.48 7.92 -40.82 -0.32 5.16 16 37 H 0.16 1.50 7.61 -52.48 -0.40 1.10 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.23 0.08 8.06 -52.49 -0.42 -0.35 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.45 6.42 -51.93 -0.33 1.11 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -33.80 377.29 -11.49 -45.29 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -5.82 Total: 14.62 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -6.28 Total: -5.40 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.13 Total: -68.28 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.80 -11.49 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078652435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.673 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds