Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.54147 * 87.22650 * 220.82548 * 12 10 9 14 14 H 1.09000 * 113.72020 * 139.14871 * 13 12 10 15 15 N 1.46499 * 113.66462 * 270.17248 * 13 12 10 16 16 C 1.34780 * 119.99733 * 252.22222 * 15 13 12 17 17 O 1.21624 * 119.99915 * 0.02562 * 16 15 13 18 18 C 1.47209 * 119.99555 * 179.97438 * 16 15 13 19 19 C 1.37757 * 119.93273 * 179.72645 * 18 16 15 20 20 C 1.39866 * 119.92536 * 179.73760 * 19 18 16 21 21 C 1.36305 * 119.81915 * 0.55678 * 20 19 18 22 22 C 1.40775 * 119.70903 * 359.71493 * 21 20 19 23 23 N 1.32814 * 132.74254 * 180.02562 * 22 21 20 24 24 C 1.32371 * 109.74402 * 179.97438 * 23 22 21 25 25 N 1.31390 * 109.61923 * 0.02562 * 24 23 22 26 26 N 1.36552 * 119.87662 * 359.97438 * 22 21 20 27 27 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 28 28 C 1.52914 * 121.13623 * 13.65051 * 27 10 9 29 29 C 1.53952 * 86.78154 * 209.37981 * 28 27 10 30 30 C 1.52905 * 121.13816 * 265.08992 * 27 10 9 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.08996 * 113.58203 * 335.39952 * 12 10 9 34 34 H 1.09000 * 113.58047 * 106.19424 * 12 10 9 35 35 H 0.96998 * 119.99784 * 72.22350 * 15 13 12 36 36 H 1.08000 * 120.04046 * 0.02562 * 19 18 16 37 37 H 1.08003 * 120.09155 * 180.27264 * 20 19 18 38 38 H 1.08002 * 120.14487 * 179.73377 * 21 20 19 39 39 H 1.08003 * 125.18892 * 180.02562 * 24 23 22 40 40 H 1.08995 * 113.66107 * 323.84906 * 28 27 10 41 41 H 1.09001 * 113.65891 * 94.90690 * 28 27 10 42 42 H 1.09000 * 113.57991 * 270.13018 * 29 28 27 43 43 H 1.09000 * 113.58227 * 139.33624 * 29 28 27 44 44 H 1.09003 * 113.66164 * 265.09185 * 30 27 10 45 45 H 1.08998 * 113.66755 * 36.14599 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 1.8389 -5.6973 -0.5452 14 1 1.1189 -6.3833 -0.9914 15 7 3.0969 -6.3516 -0.1772 16 6 3.4698 -7.4903 -0.7944 17 8 2.7622 -7.9742 -1.6571 18 6 4.7342 -8.1475 -0.4251 19 6 5.1114 -9.3143 -1.0528 20 6 6.3154 -9.9357 -0.7056 21 6 7.1058 -9.3896 0.2614 22 6 6.7064 -8.2000 0.8995 23 7 7.2600 -7.4584 1.8521 24 6 6.4855 -6.4178 2.1155 25 7 5.4191 -6.4562 1.3489 26 7 5.5316 -7.6001 0.5465 27 6 1.2507 -4.8285 0.5673 28 6 -0.2609 -4.7214 0.7713 29 6 -0.0890 -5.7263 1.9250 30 6 1.3670 -5.2385 2.0358 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.1736 -4.1326 -1.9656 34 1 2.9756 -4.3471 -1.8854 35 1 3.6614 -5.9654 0.5106 36 1 4.4804 -9.7464 -1.8154 37 1 6.6158 -10.8482 -1.1991 38 1 8.0344 -9.8673 0.5366 39 1 6.6977 -5.6537 2.8487 40 1 -0.5896 -3.7344 1.0964 41 1 -0.8437 -5.1098 -0.0640 42 1 -0.1777 -6.7671 1.6135 43 1 -0.6948 -5.4928 2.8005 44 1 2.0848 -6.0400 2.2107 45 1 1.4958 -4.3968 2.7162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078673246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 154.365800 kcal Electronic energy + Delta-G solvation = -29829.210426 eV Core-core repulsion = 25851.284636 eV Total energy + Delta-G solvation = -3977.925790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.08664 -40.71122 -39.36430 -37.77069 -35.13755 -34.44458 -33.82222 -32.17402 -31.35142 -30.39138 -29.74771 -25.76635 -25.45251 -24.53514 -24.05450 -23.85750 -23.16513 -21.95546 -21.01623 -20.21451 -18.47635 -18.17946 -17.68222 -17.24040 -16.80673 -16.68221 -16.13875 -15.83075 -15.32330 -15.02520 -14.75326 -14.61008 -14.46113 -13.87702 -13.49070 -13.35111 -13.11054 -12.71448 -12.61313 -12.47508 -12.11095 -12.04041 -11.84946 -11.67033 -11.60287 -11.40197 -10.96052 -10.85615 -10.71463 -10.58127 -10.27326 -10.16258 -10.07891 -10.00273 -9.86653 -9.67455 -9.37287 -8.90001 -8.82800 -8.66940 -6.96348 -5.79866 -3.08037 -0.20076 0.50324 1.56066 2.06056 2.67197 2.82120 3.09000 3.41499 3.47708 3.49569 3.52854 3.71815 4.28453 4.34508 4.44003 4.57064 4.71350 4.75963 4.92277 4.97931 5.04553 5.20734 5.22372 5.26693 5.42892 5.47300 5.63817 5.68790 5.77667 5.79022 5.90707 5.98017 6.02758 6.08431 6.09828 6.17734 6.20915 6.22272 6.35777 6.40584 6.48176 6.59994 6.77307 6.92859 7.02702 7.43742 7.57358 7.69337 8.02455 8.39090 9.50714 10.08150 10.43574 11.42567 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003193 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.570967 B = 8767.553655 C = 9676.456135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.707 5.707 10 C 0.181 3.819 11 H 0.074 0.926 12 C -0.173 4.173 13 C 0.137 3.863 14 H 0.099 0.901 15 N -0.683 5.683 16 C 0.558 3.442 17 O -0.526 6.526 18 C 0.093 3.907 19 C -0.083 4.083 20 C -0.070 4.070 21 C -0.082 4.082 22 C 0.277 3.723 23 N -0.540 5.540 24 C 0.251 3.749 25 N -0.345 5.345 26 N -0.275 5.275 27 C -0.124 4.124 28 C -0.103 4.103 29 C -0.140 4.140 30 C -0.122 4.122 31 H 0.255 0.745 32 H 0.387 0.613 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.418 0.582 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.232 0.768 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.216 -22.389 1.702 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.346 5.346 10 C 0.068 3.932 11 H 0.092 0.908 12 C -0.215 4.215 13 C 0.032 3.968 14 H 0.117 0.883 15 N -0.336 5.336 16 C 0.341 3.659 17 O -0.403 6.403 18 C -0.018 4.018 19 C -0.106 4.106 20 C -0.096 4.096 21 C -0.104 4.104 22 C 0.023 3.977 23 N -0.270 5.270 24 C -0.049 4.049 25 N -0.177 5.177 26 N -0.053 5.053 27 C -0.126 4.126 28 C -0.141 4.141 29 C -0.178 4.178 30 C -0.159 4.159 31 H 0.065 0.935 32 H 0.222 0.778 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.192 0.808 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.248 0.752 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.584 -21.874 1.443 24.343 hybrid contribution 0.509 1.088 0.207 1.218 sum 11.093 -20.787 1.650 23.619 Atomic orbital electron populations 1.69666 1.05082 1.25607 1.57615 1.24740 0.95512 0.97691 1.02860 0.86135 0.78827 0.84158 0.77182 1.20570 1.21866 1.21866 1.19340 0.91087 0.84189 1.42688 0.91148 1.42368 1.05858 0.99576 1.86777 1.21376 0.94649 0.85024 0.92112 0.90793 1.24333 1.01911 0.94821 1.00446 1.21684 0.84748 0.93637 0.96722 0.88308 1.45980 1.23603 1.23794 1.40253 1.17475 0.84123 0.81563 0.82692 1.90849 1.52861 1.65019 1.31596 1.20692 0.93242 0.96136 0.91733 1.21528 0.97510 0.91997 0.99580 1.21289 0.92624 1.00166 0.95482 1.20550 1.02009 0.91864 0.95931 1.21868 0.85005 0.96086 0.94699 1.70866 1.31142 1.07489 1.17487 1.26240 0.86639 0.95697 0.96342 1.78082 1.25628 1.02269 1.11734 1.47934 1.15715 1.17365 1.24272 1.23395 0.97794 0.97684 0.93746 1.22469 0.93433 1.00333 0.97867 1.22836 0.97191 0.98718 0.99040 1.22622 0.96413 1.00470 0.96432 0.93518 0.77778 0.89242 0.92358 0.73982 0.80752 0.82193 0.81977 0.75237 0.88312 0.91748 0.91051 0.91786 0.92425 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.42 5.32 -52.99 -0.28 -17.70 16 10 C 0.18 3.62 4.26 -67.48 -0.29 3.34 16 11 H 0.07 1.52 8.11 -51.93 -0.42 1.10 16 12 C -0.17 -3.20 7.70 -25.64 -0.20 -3.40 16 13 C 0.14 2.24 4.13 -67.38 -0.28 1.96 16 14 H 0.10 1.64 7.46 -51.93 -0.39 1.25 16 15 N -0.68 -10.37 4.80 -54.41 -0.26 -10.63 16 16 C 0.56 8.12 7.78 -12.62 -0.10 8.02 16 17 O -0.53 -8.58 15.89 5.26 0.08 -8.50 16 18 C 0.09 1.10 6.80 -82.05 -0.56 0.54 16 19 C -0.08 -0.65 9.58 -39.15 -0.38 -1.03 16 20 C -0.07 -0.36 10.04 -39.67 -0.40 -0.75 16 21 C -0.08 -0.55 10.09 -39.32 -0.40 -0.95 16 22 C 0.28 3.01 7.88 -156.38 -1.23 1.78 16 23 N -0.54 -6.36 11.24 -13.99 -0.16 -6.51 16 24 C 0.25 2.78 12.98 -92.00 -1.19 1.58 16 25 N -0.35 -4.50 9.99 29.25 0.29 -4.21 16 26 N -0.28 -3.38 3.92 -8.82 -0.03 -3.42 16 27 C -0.12 -2.07 0.92 -154.71 -0.14 -2.21 16 28 C -0.10 -1.68 7.15 -26.28 -0.19 -1.87 16 29 C -0.14 -1.99 8.08 -25.75 -0.21 -2.19 16 30 C -0.12 -1.86 7.62 -26.28 -0.20 -2.06 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.39 9.98 6.17 -40.82 -0.25 9.73 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.42 6.31 5.36 -40.82 -0.22 6.09 16 36 H 0.18 1.14 7.59 -52.49 -0.40 0.74 16 37 H 0.16 0.18 8.06 -52.48 -0.42 -0.25 16 38 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.23 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.10 1.83 6.99 -51.93 -0.36 1.46 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.84 7.58 -51.93 -0.39 0.45 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -33.72 374.00 -10.81 -44.53 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -5.78 Total: 15.01 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -6.00 Total: -4.49 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 0.28 Total: -69.49 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.72 -10.81 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078673246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.895 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds