Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00019 * 2 1 4 4 H 1.48500 * 109.46867 * 274.28865 * 3 2 1 5 5 H 1.48498 * 109.46963 * 34.28935 * 3 2 1 6 6 H 1.48502 * 109.47150 * 154.28759 * 3 2 1 7 7 C 1.38808 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99815 * 7.05585 * 7 2 1 9 9 N 1.36936 * 120.00331 * 187.05133 * 7 2 1 10 10 C 1.46502 * 120.00194 * 187.64890 * 9 7 2 11 11 H 1.08999 * 112.88602 * 24.02175 * 10 9 7 12 12 C 1.53952 * 113.65613 * 252.55612 * 10 9 7 13 13 C 1.53950 * 87.29795 * 270.25829 * 12 10 9 14 14 H 1.08992 * 113.74970 * 220.78689 * 13 12 10 15 15 N 1.46504 * 113.66137 * 89.73928 * 13 12 10 16 16 C 1.34778 * 120.00060 * 174.14843 * 15 13 12 17 17 O 1.21629 * 119.99803 * 4.89068 * 16 15 13 18 18 C 1.47209 * 119.99905 * 184.61168 * 16 15 13 19 19 C 1.37752 * 119.93624 * 177.29462 * 18 16 15 20 20 C 1.39861 * 119.92791 * 179.79572 * 19 18 16 21 21 C 1.36304 * 119.81805 * 0.44939 * 20 19 18 22 22 C 1.40776 * 119.70990 * 359.79572 * 21 20 19 23 23 N 1.32820 * 132.74214 * 180.02562 * 22 21 20 24 24 C 1.32369 * 109.74265 * 179.97438 * 23 22 21 25 25 N 1.31392 * 109.61828 * 359.97438 * 24 23 22 26 26 N 1.36554 * 119.87584 * 359.97438 * 22 21 20 27 27 C 1.52909 * 113.66253 * 155.37291 * 10 9 7 28 28 C 1.52908 * 121.13397 * 215.28929 * 27 10 9 29 29 C 1.53953 * 86.78443 * 100.81595 * 28 27 10 30 30 C 1.52909 * 121.13474 * 323.84726 * 27 10 9 31 31 H 0.97008 * 120.00261 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99943 * 7.64109 * 9 7 2 33 33 H 1.09000 * 113.57653 * 155.65644 * 12 10 9 34 34 H 1.08995 * 113.58668 * 24.86322 * 12 10 9 35 35 H 0.97005 * 119.99883 * 354.14894 * 15 13 12 36 36 H 1.07998 * 120.03580 * 359.97438 * 19 18 16 37 37 H 1.07994 * 120.09155 * 180.24479 * 20 19 18 38 38 H 1.08000 * 120.14328 * 179.76886 * 21 20 19 39 39 H 1.08000 * 125.19049 * 179.97438 * 24 23 22 40 40 H 1.08995 * 113.66501 * 215.28806 * 28 27 10 41 41 H 1.09005 * 113.66201 * 346.34550 * 28 27 10 42 42 H 1.08998 * 113.58188 * 270.13208 * 29 28 27 43 43 H 1.08993 * 113.65101 * 139.34634 * 29 28 27 44 44 H 1.08997 * 113.66330 * 13.65244 * 30 27 10 45 45 H 1.08995 * 113.66147 * 144.62042 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4070 2.0987 -1.3962 5 1 1.4959 2.6248 0.7888 6 1 3.5901 1.4157 0.6074 7 6 2.0102 -1.2021 0.0005 8 1 1.4763 -2.1339 -0.1139 9 7 3.3718 -1.2066 0.1461 10 6 4.1222 -2.4538 -0.0202 11 1 3.6004 -3.1830 -0.6399 12 6 4.6578 -3.0334 1.3016 13 6 5.9287 -2.1961 1.0693 14 1 6.8511 -2.7194 1.3208 15 7 5.8606 -0.8516 1.6471 16 6 6.9453 -0.0519 1.6227 17 8 7.9526 -0.4110 1.0433 18 6 6.9087 1.2587 2.2921 19 6 8.0354 2.0509 2.3142 20 6 7.9993 3.2979 2.9465 21 6 6.8507 3.7205 3.5467 22 6 5.7075 2.8993 3.5216 23 7 4.4810 3.0466 4.0096 24 6 3.7535 1.9793 3.7201 25 7 4.4811 1.1199 3.0430 26 7 5.7550 1.6861 2.8967 27 6 5.5831 -2.2424 -0.4195 28 6 6.2921 -3.2117 -1.3660 29 6 6.0504 -2.1704 -2.4739 30 6 5.9892 -1.1082 -1.3611 31 1 -0.4851 0.8401 0.0004 32 1 3.8395 -0.3840 0.3593 33 1 4.8319 -4.1089 1.2672 34 1 4.0861 -2.7246 2.1767 35 1 5.0349 -0.5368 2.0473 36 1 8.9449 1.7107 1.8414 37 1 8.8799 3.9229 2.9621 38 1 6.8180 4.6808 4.0397 39 1 2.7197 1.8366 3.9982 40 1 7.3454 -3.3623 -1.1295 41 1 5.7530 -4.1466 -1.5192 42 1 5.1056 -2.3053 -3.0004 43 1 6.8968 -2.0461 -3.1493 44 1 5.2081 -0.3628 -1.5105 45 1 6.9566 -0.6666 -1.1223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078673247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 163.097249 kcal Electronic energy + Delta-G solvation = -31301.687665 eV Core-core repulsion = 27324.140499 eV Total energy + Delta-G solvation = -3977.547166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.84270 -40.79051 -39.15750 -37.54686 -35.44822 -34.18508 -33.59253 -32.13013 -31.11443 -30.44196 -30.07974 -25.74562 -25.36538 -24.33983 -24.22695 -23.63026 -22.98072 -21.88591 -20.61761 -20.32027 -18.56153 -18.19773 -17.59373 -17.14335 -16.67622 -16.46958 -15.94988 -15.83267 -15.54075 -15.08605 -14.63876 -14.34290 -14.22934 -13.99194 -13.58123 -13.15718 -12.93522 -12.66746 -12.62761 -12.34707 -12.12114 -11.97742 -11.90632 -11.77349 -11.46859 -11.39261 -11.04470 -10.97058 -10.59719 -10.45299 -10.29741 -10.16242 -10.00980 -9.90665 -9.70477 -9.62993 -9.41567 -8.96908 -8.65045 -8.44280 -7.31035 -5.84507 -3.19753 -0.00786 0.73692 1.81453 2.27556 2.89136 2.99521 3.27753 3.30959 3.36514 3.40819 3.74927 3.95051 4.44461 4.52306 4.52969 4.64926 4.73600 4.90263 4.93941 5.02902 5.09168 5.12784 5.21843 5.28939 5.44828 5.61731 5.63943 5.65561 5.78194 5.87839 5.88936 5.97948 6.03888 6.08171 6.10711 6.17523 6.27111 6.29981 6.40669 6.42916 6.51577 6.55329 6.78306 6.82152 6.90268 7.60599 7.82035 7.97209 8.18093 8.35951 9.15863 9.87784 10.08431 11.33122 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.006453 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.894492 B = 4338.220287 C = 6324.547451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.875 3.125 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.725 5.725 10 C 0.194 3.806 11 H 0.075 0.925 12 C -0.175 4.175 13 C 0.133 3.867 14 H 0.086 0.914 15 N -0.683 5.683 16 C 0.558 3.442 17 O -0.527 6.527 18 C 0.093 3.907 19 C -0.087 4.087 20 C -0.074 4.074 21 C -0.081 4.081 22 C 0.272 3.728 23 N -0.538 5.538 24 C 0.250 3.750 25 N -0.328 5.328 26 N -0.277 5.277 27 C -0.132 4.132 28 C -0.103 4.103 29 C -0.135 4.135 30 C -0.125 4.125 31 H 0.259 0.741 32 H 0.367 0.633 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.423 0.577 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.961 2.639 5.824 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.182 4.182 3 Si 0.705 3.295 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.366 5.366 10 C 0.082 3.918 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.028 3.972 14 H 0.104 0.896 15 N -0.339 5.339 16 C 0.342 3.658 17 O -0.404 6.404 18 C -0.018 4.018 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.102 4.102 22 C 0.019 3.981 23 N -0.268 5.268 24 C -0.050 4.050 25 N -0.159 5.159 26 N -0.055 5.055 27 C -0.135 4.135 28 C -0.142 4.142 29 C -0.172 4.172 30 C -0.162 4.162 31 H 0.070 0.930 32 H 0.202 0.798 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.267 0.733 36 H 0.191 0.809 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.247 0.753 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.735 1.876 5.364 18.623 hybrid contribution 0.142 1.576 0.237 1.599 sum 17.877 3.451 5.601 19.049 Atomic orbital electron populations 1.69703 1.05030 1.25776 1.56897 1.24647 0.95082 0.96819 1.01682 0.86712 0.79634 0.85515 0.77594 1.21722 1.21755 1.19813 1.19066 0.80888 0.94732 1.42668 0.89042 1.42629 1.04733 1.05278 1.83946 1.20832 0.88356 0.89714 0.92874 0.90722 1.24119 0.95841 0.98890 1.02803 1.21790 0.99154 0.82141 0.94080 0.89598 1.46161 1.14751 1.15107 1.57843 1.17486 0.84567 0.83025 0.80717 1.90811 1.32219 1.73690 1.43713 1.20691 0.84426 0.97302 0.99424 1.21456 0.97138 0.93323 0.99163 1.21233 0.98465 0.95339 0.94901 1.20522 0.88633 1.00063 1.00991 1.21878 0.95222 0.86618 0.94411 1.70849 1.00512 1.26428 1.28978 1.26251 1.00884 0.86233 0.91635 1.78199 0.87286 1.22414 1.27992 1.48000 1.08940 1.14400 1.34162 1.23607 0.99063 0.98319 0.92471 1.22472 0.99770 0.96676 0.95236 1.22752 1.01446 0.96925 0.96097 1.22579 1.01268 0.96565 0.95803 0.93037 0.79801 0.89229 0.90548 0.73261 0.80942 0.82352 0.82085 0.75342 0.90192 0.91325 0.90111 0.92168 0.91702 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.97 55.49 0.78 -27.81 16 2 C 0.01 0.40 5.50 -17.43 -0.10 0.31 16 3 Si 0.87 22.42 28.07 -169.99 -4.77 17.65 16 4 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.27 -6.61 5.50 56.52 0.31 -6.30 16 7 C -0.24 -6.70 10.44 -15.06 -0.16 -6.86 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.72 -16.81 4.36 -52.99 -0.23 -17.04 16 10 C 0.19 3.73 4.36 -67.48 -0.29 3.43 16 11 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 12 C -0.18 -2.89 7.58 -25.75 -0.20 -3.08 16 13 C 0.13 2.19 3.82 -67.48 -0.26 1.93 16 14 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 15 N -0.68 -12.02 4.26 -54.51 -0.23 -12.25 16 16 C 0.56 9.33 7.31 -12.62 -0.09 9.23 16 17 O -0.53 -9.08 14.93 5.25 0.08 -9.00 16 18 C 0.09 1.37 6.80 -82.05 -0.56 0.81 16 19 C -0.09 -0.91 9.58 -39.15 -0.38 -1.28 16 20 C -0.07 -0.56 10.04 -39.67 -0.40 -0.96 16 21 C -0.08 -0.78 10.09 -39.32 -0.40 -1.18 16 22 C 0.27 3.98 7.88 -156.37 -1.23 2.75 16 23 N -0.54 -8.66 11.24 -13.99 -0.16 -8.82 16 24 C 0.25 4.15 12.98 -92.00 -1.19 2.95 16 25 N -0.33 -5.93 9.40 29.25 0.27 -5.66 16 26 N -0.28 -4.49 3.92 -8.82 -0.03 -4.53 16 27 C -0.13 -2.20 0.82 -154.71 -0.13 -2.32 16 28 C -0.10 -1.44 7.84 -26.28 -0.21 -1.64 16 29 C -0.13 -2.01 8.08 -25.74 -0.21 -2.22 16 30 C -0.12 -2.19 7.04 -26.28 -0.19 -2.37 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.37 8.59 3.78 -40.82 -0.15 8.43 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.42 8.02 4.65 -40.82 -0.19 7.83 16 36 H 0.17 1.47 7.59 -52.49 -0.40 1.07 16 37 H 0.16 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.23 3.16 8.06 -52.49 -0.42 2.74 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.32 7.57 -51.93 -0.39 0.92 16 45 H 0.08 1.43 6.68 -51.93 -0.35 1.08 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -34.23 365.85 -10.53 -44.76 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -5.77 Total: 17.67 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -5.97 Total: -0.49 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: 0.39 Total: -76.10 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.77 Total: 17.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.23 -10.53 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078673247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.858 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds