Wall clock time and date at job start Sat Apr 11 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47224 * 239.99902 * 3 2 1 5 5 H 1.48500 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46948 * 120.00131 * 3 2 1 7 7 C 1.38811 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99811 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99453 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.88771 * 336.34606 * 10 9 7 12 12 C 1.54143 * 113.80289 * 107.71006 * 10 9 7 13 13 C 1.53946 * 87.23019 * 139.16004 * 12 10 9 14 14 H 1.09001 * 113.66426 * 89.85437 * 13 12 10 15 15 N 1.46496 * 113.66361 * 220.82595 * 13 12 10 16 16 C 1.34777 * 119.99647 * 253.98083 * 15 13 12 17 17 O 1.21625 * 120.00411 * 0.02562 * 16 15 13 18 18 C 1.47216 * 119.99901 * 179.97438 * 16 15 13 19 19 C 1.37748 * 119.94107 * 179.97438 * 18 16 15 20 20 C 1.39862 * 119.93269 * 180.02562 * 19 18 16 21 21 C 1.36302 * 119.81748 * 0.02562 * 20 19 18 22 22 C 1.40779 * 119.70982 * 0.02562 * 21 20 19 23 23 N 1.32814 * 132.74087 * 180.33715 * 22 21 20 24 24 C 1.32370 * 109.74345 * 180.12437 * 23 22 21 25 25 N 1.31398 * 109.61560 * 359.55613 * 24 23 22 26 26 N 1.36549 * 119.87530 * 359.97438 * 22 21 20 27 27 C 1.52913 * 86.88373 * 335.34341 * 13 12 10 28 28 C 1.52905 * 121.13705 * 259.13597 * 27 13 12 29 29 C 1.53946 * 86.78702 * 209.37678 * 28 27 13 30 30 C 1.52906 * 121.14109 * 150.57043 * 27 13 12 31 31 H 0.97005 * 120.00036 * 359.97438 * 1 2 3 32 32 H 0.96992 * 120.00192 * 0.02562 * 9 7 2 33 33 H 1.08999 * 113.58427 * 24.58470 * 12 10 9 34 34 H 1.09008 * 113.63216 * 253.73604 * 12 10 9 35 35 H 0.96995 * 119.99988 * 73.98360 * 15 13 12 36 36 H 1.08001 * 120.03053 * 0.04158 * 19 18 16 37 37 H 1.07994 * 120.09388 * 180.02562 * 20 19 18 38 38 H 1.07993 * 120.14576 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.19495 * 179.82822 * 24 23 22 40 40 H 1.09003 * 113.66466 * 323.85004 * 28 27 13 41 41 H 1.09007 * 113.66298 * 94.90169 * 28 27 13 42 42 H 1.09008 * 113.57810 * 270.13477 * 29 28 27 43 43 H 1.08994 * 113.58189 * 139.33188 * 29 28 27 44 44 H 1.08994 * 113.66323 * 265.09190 * 30 27 13 45 45 H 1.08996 * 113.65991 * 36.15029 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0665 -3.5640 -0.4034 12 6 1.9975 -4.4101 1.3429 13 6 1.8268 -5.7030 0.5250 14 1 2.7695 -6.1866 0.2691 15 7 0.8453 -6.6316 1.0911 16 6 1.2596 -7.7532 1.7132 17 8 2.4482 -7.9941 1.8050 18 6 0.2734 -8.6861 2.2826 19 6 0.6981 -9.8323 2.9177 20 6 -0.2391 -10.7188 3.4581 21 6 -1.5701 -10.4448 3.3535 22 6 -1.9916 -9.2706 2.7011 23 7 -3.1913 -8.7544 2.4601 24 6 -3.0632 -7.6146 1.7995 25 7 -1.7892 -7.3585 1.6045 26 7 -1.0662 -8.4136 2.1779 27 6 1.2655 -4.8230 -0.5925 28 6 -0.2407 -4.7144 -0.8324 29 6 0.1009 -4.4607 -2.3119 30 6 1.4181 -5.2175 -2.0619 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.1254 -4.1572 1.9459 34 1 2.9290 -4.3714 1.9079 35 1 -0.1026 -6.4393 1.0182 36 1 1.7536 -10.0461 2.9984 37 1 0.0910 -11.6180 3.9569 38 1 -2.2983 -11.1254 3.7692 39 1 -3.8808 -6.9882 1.4744 40 1 -0.7793 -5.6465 -0.6613 41 1 -0.7021 -3.8599 -0.3372 42 1 0.2423 -3.4070 -2.5523 43 1 -0.5681 -4.9680 -3.0070 44 1 2.2818 -4.7650 -2.5489 45 1 1.3457 -6.2909 -2.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078673248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:20 Heat of formation + Delta-G solvation = 153.754025 kcal Electronic energy + Delta-G solvation = -29805.358053 eV Core-core repulsion = 25827.405735 eV Total energy + Delta-G solvation = -3977.952318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.07339 -40.64180 -39.36639 -37.75629 -34.93333 -34.45161 -33.83749 -32.32192 -31.33922 -30.38102 -29.82185 -25.78195 -25.47482 -24.34826 -24.15232 -23.84315 -23.16301 -21.76376 -20.71489 -20.40700 -18.49123 -18.10758 -17.76039 -17.16731 -16.73811 -16.65651 -16.21431 -16.04336 -15.11453 -14.99875 -14.77026 -14.61407 -14.43355 -14.09136 -13.35519 -13.10227 -13.04436 -12.81894 -12.68190 -12.41696 -12.06383 -12.03064 -11.84228 -11.60397 -11.50617 -11.23770 -10.95360 -10.83243 -10.73989 -10.54248 -10.25545 -10.18594 -10.04629 -9.99289 -9.89518 -9.70698 -9.45328 -8.86315 -8.83402 -8.62064 -6.98705 -5.80642 -3.09212 -0.18145 0.51446 1.57449 2.07935 2.69175 2.91431 3.11513 3.42436 3.47252 3.47816 3.54437 3.74315 4.31793 4.36806 4.45307 4.57065 4.76477 4.79988 4.92847 4.96805 5.06515 5.21819 5.27419 5.29583 5.42472 5.48662 5.68100 5.70551 5.79815 5.81985 5.93289 5.98256 6.00339 6.03796 6.07827 6.18232 6.19472 6.33874 6.39576 6.51794 6.55734 6.58012 6.86823 6.93011 7.03838 7.47690 7.59830 7.67896 8.06467 8.38015 9.49642 10.06079 10.41348 11.41525 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.002896 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.277344 B = 9666.257206 C =10072.099526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.704 5.704 10 C 0.194 3.806 11 H 0.083 0.917 12 C -0.173 4.173 13 C 0.125 3.875 14 H 0.112 0.888 15 N -0.689 5.689 16 C 0.554 3.446 17 O -0.529 6.529 18 C 0.093 3.907 19 C -0.084 4.084 20 C -0.070 4.070 21 C -0.083 4.083 22 C 0.277 3.723 23 N -0.540 5.540 24 C 0.250 3.750 25 N -0.346 5.346 26 N -0.275 5.275 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.130 4.130 30 C -0.126 4.126 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.417 0.583 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.232 0.768 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -23.559 4.180 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.343 5.343 10 C 0.081 3.919 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.020 3.980 14 H 0.130 0.870 15 N -0.343 5.343 16 C 0.338 3.662 17 O -0.406 6.406 18 C -0.018 4.018 19 C -0.107 4.107 20 C -0.095 4.095 21 C -0.105 4.105 22 C 0.023 3.977 23 N -0.270 5.270 24 C -0.050 4.050 25 N -0.178 5.178 26 N -0.053 5.053 27 C -0.121 4.121 28 C -0.153 4.153 29 C -0.167 4.167 30 C -0.163 4.163 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.192 0.808 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.248 0.752 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.515 -22.851 3.863 23.311 hybrid contribution -0.352 0.894 0.161 0.974 sum -2.868 -21.957 4.024 22.506 Atomic orbital electron populations 1.69646 1.05109 1.25879 1.57314 1.24740 0.95500 0.97705 1.02709 0.86270 0.78546 0.83499 0.77878 1.21226 1.21723 1.21252 1.19261 0.91097 0.84103 1.43127 0.91077 1.42337 1.05854 0.99416 1.86682 1.21071 0.94756 0.84384 0.91670 0.89908 1.24322 1.01851 0.94989 1.00404 1.22456 0.92372 0.87733 0.95438 0.87034 1.46392 1.12828 1.20666 1.54456 1.17550 0.87316 0.81707 0.79671 1.90840 1.15188 1.75441 1.59145 1.20766 0.79840 0.98282 1.02956 1.21525 1.02799 0.90762 0.95647 1.21286 0.91617 0.99676 0.96951 1.20544 0.97115 0.93830 0.98966 1.21870 0.85168 0.93717 0.96908 1.70863 1.20613 1.11920 1.23610 1.26244 0.93592 0.92575 0.92561 1.78075 1.05953 1.07641 1.26147 1.47926 1.05988 1.16076 1.35264 1.23617 0.97610 0.97829 0.93066 1.22433 0.94283 1.01397 0.97231 1.22733 0.96566 1.01533 0.95861 1.22701 0.98673 0.99181 0.95763 0.93399 0.77717 0.90211 0.91877 0.74003 0.80772 0.82216 0.81992 0.75235 0.90937 0.90314 0.89034 0.92538 0.91326 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -17.11 5.33 -52.89 -0.28 -17.39 16 10 C 0.19 3.84 4.36 -67.37 -0.29 3.54 16 11 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 12 C -0.17 -3.19 7.70 -25.65 -0.20 -3.38 16 13 C 0.12 2.03 4.09 -67.48 -0.28 1.75 16 14 H 0.11 1.81 7.50 -51.93 -0.39 1.42 16 15 N -0.69 -10.60 5.26 -54.51 -0.29 -10.89 16 16 C 0.55 8.21 7.78 -12.61 -0.10 8.11 16 17 O -0.53 -8.72 15.91 5.26 0.08 -8.63 16 18 C 0.09 1.12 6.80 -82.05 -0.56 0.56 16 19 C -0.08 -0.68 9.58 -39.15 -0.38 -1.06 16 20 C -0.07 -0.37 10.04 -39.67 -0.40 -0.77 16 21 C -0.08 -0.58 10.09 -39.32 -0.40 -0.97 16 22 C 0.28 3.06 7.88 -156.38 -1.23 1.83 16 23 N -0.54 -6.44 11.24 -13.99 -0.16 -6.60 16 24 C 0.25 2.80 12.98 -92.00 -1.19 1.61 16 25 N -0.35 -4.56 9.99 29.25 0.29 -4.26 16 26 N -0.28 -3.44 3.93 -8.81 -0.03 -3.47 16 27 C -0.12 -1.98 1.07 -154.71 -0.16 -2.14 16 28 C -0.12 -1.90 6.78 -26.29 -0.18 -2.08 16 29 C -0.13 -2.07 8.08 -25.75 -0.21 -2.28 16 30 C -0.13 -1.91 7.84 -26.28 -0.21 -2.12 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.39 9.93 5.92 -40.82 -0.24 9.69 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 35 H 0.42 6.34 3.92 -40.82 -0.16 6.18 16 36 H 0.17 1.18 7.59 -52.49 -0.40 0.78 16 37 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 38 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.23 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.07 1.10 6.99 -51.93 -0.36 0.73 16 41 H 0.08 1.48 6.42 -51.92 -0.33 1.14 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -33.31 371.74 -10.76 -44.08 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -5.66 Total: 15.83 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -6.02 Total: -4.59 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: 0.26 Total: -69.44 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.31 -10.76 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078673248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.830 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds