Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09002 * 113.66394 * 220.79902 * 13 12 10 15 15 N 1.46498 * 113.66180 * 89.83075 * 13 12 10 16 16 C 1.34779 * 119.99958 * 104.51120 * 15 13 12 17 17 O 1.21630 * 120.00078 * 359.97438 * 16 15 13 18 18 C 1.47205 * 120.00109 * 180.02562 * 16 15 13 19 19 C 1.37753 * 119.94227 * 179.71688 * 18 16 15 20 20 C 1.39860 * 119.93277 * 179.73214 * 19 18 16 21 21 C 1.36298 * 119.81839 * 0.56091 * 20 19 18 22 22 C 1.40777 * 119.70929 * 359.71518 * 21 20 19 23 23 N 1.32812 * 132.74104 * 180.02562 * 22 21 20 24 24 C 1.32374 * 109.74329 * 179.97438 * 23 22 21 25 25 N 1.31389 * 109.61780 * 0.02562 * 24 23 22 26 26 N 1.36556 * 119.87625 * 359.97438 * 22 21 20 27 27 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 28 28 C 1.52907 * 121.14350 * 94.90830 * 27 10 9 29 29 C 1.53946 * 86.78434 * 209.37620 * 28 27 10 30 30 C 1.52906 * 121.13637 * 346.33941 * 27 10 9 31 31 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 34 34 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 35 35 H 0.96997 * 120.00138 * 284.50333 * 15 13 12 36 36 H 1.08007 * 120.03158 * 0.02562 * 19 18 16 37 37 H 1.07997 * 120.09214 * 180.27642 * 20 19 18 38 38 H 1.07998 * 120.14673 * 179.68359 * 21 20 19 39 39 H 1.08002 * 125.19368 * 179.97438 * 24 23 22 40 40 H 1.09001 * 113.66043 * 323.84687 * 28 27 10 41 41 H 1.09000 * 113.66310 * 94.90448 * 28 27 10 42 42 H 1.09000 * 113.58131 * 270.13296 * 29 28 27 43 43 H 1.08999 * 113.65580 * 139.34498 * 29 28 27 44 44 H 1.08996 * 113.66552 * 265.09839 * 30 27 10 45 45 H 1.09001 * 113.66060 * 36.16135 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5463 -3.2850 0.4577 12 6 4.7320 -2.8325 -1.3574 13 6 5.9742 -3.3095 -0.5832 14 1 6.9169 -3.0354 -1.0569 15 7 5.9200 -4.7216 -0.1971 16 6 6.6548 -5.6319 -0.8664 17 8 7.3625 -5.2811 -1.7913 18 6 6.5999 -7.0510 -0.4788 19 6 7.3469 -7.9812 -1.1674 20 6 7.2989 -9.3286 -0.7954 21 6 6.5035 -9.7177 0.2408 22 6 5.7404 -8.7584 0.9330 23 7 4.8985 -8.8439 1.9566 24 6 4.4257 -7.6424 2.2484 25 7 4.9426 -6.7542 1.4297 26 7 5.8014 -7.4451 0.5636 27 6 5.5440 -2.3505 0.5274 28 6 5.8777 -2.6362 1.9920 29 6 7.0249 -1.6212 1.8385 30 6 6.2120 -0.9854 0.6960 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0007 33 1 4.2070 -3.6346 -1.8762 34 1 4.9191 -1.9681 -1.9945 35 1 5.3554 -5.0015 0.5403 36 1 7.9726 -7.6697 -1.9908 37 1 7.8869 -10.0594 -1.3307 38 1 6.4585 -10.7575 0.5292 39 1 3.7218 -7.4254 3.0382 40 1 5.1016 -2.3172 2.6878 41 1 6.2172 -3.6562 2.1724 42 1 7.9625 -2.0694 1.5095 43 1 7.1489 -0.9674 2.7017 44 1 6.8186 -0.6866 -0.1588 45 1 5.5299 -0.2026 1.0276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078673249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 158.979103 kcal Electronic energy + Delta-G solvation = -29897.890062 eV Core-core repulsion = 25920.164320 eV Total energy + Delta-G solvation = -3977.725742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.09383 -40.83847 -39.43951 -37.79553 -35.26191 -34.53060 -33.89103 -32.20899 -31.35870 -30.52771 -30.19501 -25.86225 -25.63685 -24.58504 -24.17154 -23.86493 -23.07252 -21.78217 -21.06660 -20.33314 -18.50332 -18.34279 -17.89152 -17.51362 -16.86279 -16.69322 -16.16466 -15.90890 -15.37456 -15.07216 -14.84428 -14.73814 -14.49922 -14.08369 -13.37635 -13.27869 -13.11802 -12.82161 -12.63390 -12.54176 -12.22779 -12.21762 -12.05231 -11.96342 -11.62326 -11.54216 -11.08564 -10.98463 -10.81429 -10.62856 -10.32136 -10.25169 -10.08491 -10.01208 -9.97268 -9.70917 -9.47268 -8.96179 -8.86985 -8.69826 -7.27958 -5.79915 -3.15350 -0.21457 0.49571 1.55131 2.04544 2.65659 2.77164 3.07110 3.33762 3.37110 3.42878 3.52068 3.70294 4.25608 4.33224 4.43362 4.55498 4.57795 4.72275 4.80471 4.88768 4.93112 5.04438 5.08802 5.24897 5.31888 5.46288 5.53305 5.57557 5.67617 5.75138 5.77997 5.83288 5.87378 5.95991 6.01570 6.04953 6.07007 6.16846 6.18978 6.22888 6.38479 6.52085 6.58716 6.75592 6.89403 7.38778 7.55911 7.96794 7.97443 8.39837 9.17632 9.90014 10.10416 11.38390 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003168 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.008959 B = 8835.641512 C = 9425.707585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.732 5.732 10 C 0.187 3.813 11 H 0.082 0.918 12 C -0.173 4.173 13 C 0.140 3.860 14 H 0.099 0.901 15 N -0.684 5.684 16 C 0.559 3.441 17 O -0.526 6.526 18 C 0.093 3.907 19 C -0.082 4.082 20 C -0.071 4.071 21 C -0.081 4.081 22 C 0.277 3.723 23 N -0.539 5.539 24 C 0.252 3.748 25 N -0.346 5.346 26 N -0.276 5.276 27 C -0.126 4.126 28 C -0.122 4.122 29 C -0.139 4.139 30 C -0.109 4.109 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.418 0.582 36 H 0.175 0.825 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.232 0.768 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.336 -18.678 1.652 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.372 5.372 10 C 0.076 3.924 11 H 0.100 0.900 12 C -0.215 4.215 13 C 0.035 3.965 14 H 0.117 0.883 15 N -0.338 5.338 16 C 0.343 3.657 17 O -0.403 6.403 18 C -0.019 4.019 19 C -0.105 4.105 20 C -0.096 4.096 21 C -0.102 4.102 22 C 0.023 3.977 23 N -0.269 5.269 24 C -0.048 4.048 25 N -0.178 5.178 26 N -0.053 5.053 27 C -0.128 4.128 28 C -0.160 4.160 29 C -0.176 4.176 30 C -0.146 4.146 31 H 0.070 0.930 32 H 0.198 0.802 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.261 0.739 36 H 0.192 0.808 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.248 0.752 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.128 -17.908 1.379 25.519 hybrid contribution 0.210 1.012 0.234 1.060 sum 18.338 -16.896 1.613 24.987 Atomic orbital electron populations 1.69695 1.05108 1.25846 1.57327 1.24672 0.95223 0.97160 1.01923 0.86597 0.79214 0.85103 0.77866 1.21003 1.21693 1.20289 1.19124 0.80633 0.94750 1.43132 0.89195 1.42699 1.03951 1.01924 1.88667 1.21364 0.88702 0.89949 0.92433 0.89990 1.24258 0.95863 1.00972 1.00366 1.21585 1.00082 0.78492 0.96368 0.88300 1.45966 1.44918 1.07226 1.35678 1.17468 0.81213 0.83773 0.83257 1.90852 1.40997 1.79645 1.28762 1.20656 0.95446 0.96133 0.89646 1.21525 0.97819 0.91553 0.99643 1.21283 0.97040 0.95807 0.95484 1.20556 0.95204 0.99366 0.95121 1.21870 0.97006 0.84616 0.94163 1.70870 1.15743 1.24712 1.15590 1.26248 0.96593 0.85120 0.96858 1.78065 1.12511 1.18916 1.08280 1.47936 1.27818 1.08273 1.21287 1.23400 0.98827 0.96401 0.94214 1.22641 0.98325 0.98769 0.96249 1.22827 0.97332 0.98657 0.98820 1.22504 0.98256 0.95443 0.98442 0.93025 0.80240 0.91898 0.89297 0.73896 0.80764 0.82187 0.81956 0.75194 0.89371 0.92060 0.90793 0.91695 0.91489 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.93 27.73 -169.99 -4.71 17.21 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.90 10.46 -15.06 -0.16 -7.05 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.73 -17.05 5.14 -52.99 -0.27 -17.32 16 10 C 0.19 3.61 4.28 -67.48 -0.29 3.32 16 11 H 0.08 1.66 8.12 -51.93 -0.42 1.24 16 12 C -0.17 -3.06 7.68 -25.75 -0.20 -3.25 16 13 C 0.14 2.17 4.07 -67.48 -0.27 1.89 16 14 H 0.10 1.53 7.54 -51.93 -0.39 1.14 16 15 N -0.68 -10.01 4.86 -54.51 -0.26 -10.28 16 16 C 0.56 7.91 7.78 -12.62 -0.10 7.81 16 17 O -0.53 -8.33 15.93 5.25 0.08 -8.25 16 18 C 0.09 1.06 6.80 -82.05 -0.56 0.50 16 19 C -0.08 -0.63 9.58 -39.15 -0.38 -1.01 16 20 C -0.07 -0.35 10.04 -39.67 -0.40 -0.75 16 21 C -0.08 -0.54 10.09 -39.32 -0.40 -0.94 16 22 C 0.28 2.98 7.88 -156.37 -1.23 1.75 16 23 N -0.54 -6.32 11.24 -13.99 -0.16 -6.48 16 24 C 0.25 2.77 12.98 -92.00 -1.19 1.58 16 25 N -0.35 -4.44 9.99 29.25 0.29 -4.15 16 26 N -0.28 -3.33 3.93 -8.82 -0.03 -3.37 16 27 C -0.13 -1.99 0.91 -154.71 -0.14 -2.13 16 28 C -0.12 -1.75 7.60 -26.29 -0.20 -1.95 16 29 C -0.14 -1.81 8.08 -25.75 -0.21 -2.02 16 30 C -0.11 -1.63 7.16 -26.28 -0.19 -1.81 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.36 8.27 3.98 -40.82 -0.16 8.11 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.42 6.12 5.23 -40.82 -0.21 5.90 16 36 H 0.18 1.10 7.59 -52.48 -0.40 0.70 16 37 H 0.16 0.16 8.06 -52.49 -0.42 -0.26 16 38 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.23 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.53 6.96 -51.93 -0.36 1.17 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -34.85 370.74 -10.45 -45.30 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.73 Total: 14.12 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -6.01 Total: -3.97 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: 0.34 Total: -70.00 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.85 -10.45 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078673249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.276 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds