Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00324 * 2 1 4 4 H 1.48499 * 109.47478 * 270.00066 * 3 2 1 5 5 H 1.48509 * 109.47066 * 30.00281 * 3 2 1 6 6 H 1.48507 * 109.47343 * 149.99854 * 3 2 1 7 7 C 1.38817 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00410 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.09009 * 112.84849 * 336.20449 * 10 9 7 12 12 C 1.53951 * 113.73918 * 107.40518 * 10 9 7 13 13 C 1.53779 * 87.01779 * 139.94739 * 12 10 9 14 14 H 1.09006 * 113.61698 * 89.23043 * 13 12 10 15 15 C 1.53006 * 113.61588 * 220.04774 * 13 12 10 16 16 N 1.46504 * 109.46883 * 274.13896 * 15 13 12 17 17 C 1.34775 * 119.99531 * 179.97438 * 16 15 13 18 18 O 1.21612 * 120.00327 * 0.02562 * 17 16 15 19 19 C 1.47316 * 119.99863 * 179.97438 * 17 16 15 20 20 C 1.37910 * 126.80540 * 0.03402 * 19 17 16 21 21 N 1.34190 * 107.89757 * 179.97438 * 20 19 17 22 22 H 0.97001 * 125.17136 * 179.97438 * 21 20 19 23 23 N 1.39777 * 109.66971 * 359.97438 * 21 20 19 24 24 C 1.31378 * 109.06678 * 359.70847 * 23 21 20 25 25 C 1.48240 * 126.51775 * 180.29871 * 24 23 21 26 26 C 1.39382 * 119.72884 * 335.16867 * 25 24 23 27 27 C 1.38393 * 119.06736 * 179.97438 * 26 25 24 28 28 C 1.38794 * 118.51112 * 0.02562 * 27 26 25 29 29 C 1.38258 * 119.37472 * 359.97438 * 28 27 26 30 30 N 1.31752 * 120.89849 * 359.72387 * 29 28 27 31 31 C 1.53771 * 113.61629 * 205.00337 * 10 9 7 32 32 H 0.97008 * 119.99797 * 359.97438 * 1 2 3 33 33 H 0.97001 * 119.99746 * 0.02562 * 9 7 2 34 34 H 1.08999 * 113.61491 * 25.42634 * 12 10 9 35 35 H 1.09002 * 113.67066 * 254.47009 * 12 10 9 36 36 H 1.09001 * 109.47002 * 34.13393 * 15 13 12 37 37 H 1.08993 * 109.46955 * 154.13830 * 15 13 12 38 38 H 0.96992 * 119.99966 * 359.97438 * 16 15 13 39 39 H 1.08001 * 126.05167 * 359.96602 * 20 19 17 40 40 H 1.08001 * 120.46753 * 0.02562 * 26 25 24 41 41 H 1.07998 * 120.74744 * 180.02562 * 27 26 25 42 42 H 1.08000 * 120.30947 * 180.02562 * 28 27 26 43 43 H 1.07998 * 119.54637 * 180.02562 * 29 28 27 44 44 H 1.09006 * 113.61359 * 105.38648 * 31 10 9 45 45 H 1.09001 * 113.69284 * 334.49759 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5279 -3.2970 0.4047 12 6 4.7865 -2.7972 -1.3460 13 6 5.9838 -3.3113 -0.5293 14 1 5.9128 -4.3671 -0.2674 15 6 7.3408 -2.9381 -1.1296 16 7 7.7253 -3.9396 -2.1274 17 6 8.8916 -3.8159 -2.7914 18 8 9.6250 -2.8732 -2.5620 19 6 9.2786 -4.8231 -3.7943 20 6 8.5595 -5.9406 -4.1631 21 7 9.2614 -6.5907 -5.1041 22 1 8.9854 -7.4127 -5.5389 23 7 10.4508 -5.9035 -5.3626 24 6 10.5010 -4.8321 -4.6039 25 6 11.5888 -3.8255 -4.5698 26 6 12.8766 -4.1860 -4.9625 27 6 13.8816 -3.2352 -4.9258 28 6 13.5658 -1.9536 -4.4967 29 6 12.2668 -1.6649 -4.1214 30 7 11.3273 -2.5872 -4.1714 31 6 5.5261 -2.3659 0.5939 32 1 -0.4850 0.8401 0.0004 33 1 3.8646 -0.3622 -0.0007 34 1 5.0133 -1.9159 -1.9459 35 1 4.2777 -3.5769 -1.9129 36 1 7.2711 -1.9597 -1.6051 37 1 8.0910 -2.9056 -0.3396 38 1 7.1406 -4.6915 -2.3101 39 1 7.6011 -6.2397 -3.7650 40 1 13.0871 -5.1928 -5.2916 41 1 14.8890 -3.4848 -5.2245 42 1 14.3275 -1.1890 -4.4570 43 1 12.0179 -0.6685 -3.7875 44 1 5.6136 -2.7978 1.5909 45 1 5.9567 -1.3668 0.5262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086104730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 121.361920 kcal Electronic energy + Delta-G solvation = -27949.804565 eV Core-core repulsion = 23970.447620 eV Total energy + Delta-G solvation = -3979.356946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53158 -40.00170 -39.33891 -38.25296 -34.59448 -33.38845 -33.16405 -32.60120 -31.08553 -30.46655 -30.34193 -27.34226 -25.17008 -24.54799 -23.95635 -23.68351 -22.78014 -21.04239 -20.76291 -20.07726 -19.33297 -18.61970 -17.40240 -17.05629 -16.50884 -16.23356 -15.88217 -15.79999 -15.46598 -15.01981 -14.71246 -14.38501 -14.34487 -14.06303 -13.92062 -13.64478 -13.45551 -13.01399 -12.91466 -12.66205 -12.15727 -12.04957 -11.94238 -11.56963 -11.50456 -11.47415 -10.87997 -10.63705 -10.45131 -10.29040 -10.11973 -10.03483 -9.83073 -9.71759 -9.51963 -9.29254 -9.27020 -8.91750 -8.87114 -8.75329 -7.25512 -5.77694 -3.12867 0.49844 1.11344 1.21495 1.98548 2.21425 3.26275 3.39180 3.42644 3.46894 3.47671 3.70121 3.76715 4.15750 4.50685 4.59446 4.60257 4.67869 4.83912 4.87223 4.90298 4.94956 5.07026 5.10928 5.22131 5.27070 5.42637 5.46766 5.51404 5.68885 5.75427 5.78368 5.85071 5.85938 5.95135 6.00127 6.21271 6.26507 6.28213 6.44232 6.50157 6.57667 6.65019 6.73904 7.01066 7.01522 7.65780 7.88847 7.98926 8.42232 8.47260 9.20407 9.93336 10.13312 11.40508 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.002119 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.130522 B =13208.621898 C =14299.534688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.171 3.829 11 H 0.083 0.917 12 C -0.160 4.160 13 C -0.126 4.126 14 H 0.089 0.911 15 C 0.138 3.862 16 N -0.730 5.730 17 C 0.579 3.421 18 O -0.501 6.501 19 C -0.253 4.253 20 C 0.100 3.900 21 N -0.461 5.461 22 H 0.445 0.555 23 N -0.276 5.276 24 C 0.172 3.828 25 C 0.185 3.815 26 C -0.142 4.142 27 C -0.086 4.086 28 C -0.165 4.165 29 C 0.103 3.897 30 N -0.408 5.408 31 C -0.145 4.145 32 H 0.259 0.741 33 H 0.363 0.637 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.393 0.607 39 H 0.191 0.809 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.159 0.841 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.282 -14.546 -10.388 32.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.201 4.201 13 C -0.145 4.145 14 H 0.107 0.893 15 C 0.015 3.985 16 N -0.382 5.382 17 C 0.364 3.636 18 O -0.375 6.375 19 C -0.268 4.268 20 C -0.050 4.050 21 N -0.167 5.167 22 H 0.290 0.710 23 N -0.098 5.098 24 C 0.003 3.997 25 C 0.046 3.954 26 C -0.164 4.164 27 C -0.112 4.112 28 C -0.186 4.186 29 C -0.056 4.056 30 N -0.117 5.117 31 C -0.185 4.185 32 H 0.069 0.931 33 H 0.196 0.804 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.226 0.774 39 H 0.208 0.792 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 27.247 -14.336 -10.819 32.634 hybrid contribution 0.437 0.513 -0.014 0.674 sum 27.684 -13.823 -10.833 32.785 Atomic orbital electron populations 1.69705 1.05132 1.25859 1.57407 1.24700 0.95273 0.97307 1.01935 0.86551 0.79253 0.84901 0.77854 1.21038 1.21734 1.20214 1.19134 0.80734 0.94720 1.43120 0.89179 1.42763 1.04059 1.02078 1.88782 1.21540 0.89538 0.89952 0.92973 0.89938 1.23926 0.95973 1.00522 0.99678 1.22629 0.93327 0.99719 0.98849 0.89262 1.21332 0.95366 0.91618 0.90224 1.45858 1.21412 1.28803 1.42145 1.17111 0.81352 0.84743 0.80351 1.90882 1.51055 1.31229 1.64293 1.21418 0.97648 1.00349 1.07425 1.23097 0.97786 0.92863 0.91235 1.45909 1.15174 1.23366 1.32278 0.70964 1.77266 1.02141 1.07721 1.22700 1.21308 0.93021 0.92057 0.93347 1.18358 0.89226 0.90326 0.97441 1.22067 0.92951 1.01094 1.00241 1.21479 0.99455 0.92963 0.97268 1.22324 0.98526 0.97562 1.00161 1.22837 0.88538 0.98689 0.95568 1.67900 1.35793 0.99764 1.08199 1.23453 0.98857 0.99049 0.97129 0.93059 0.80432 0.90421 0.92414 0.91402 0.91940 0.77404 0.79226 0.84584 0.84643 0.84686 0.82399 0.91732 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.21 27.73 -169.99 -4.71 17.50 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 9 N -0.74 -17.22 5.21 -52.55 -0.27 -17.49 16 10 C 0.17 3.13 4.48 -67.04 -0.30 2.83 16 11 H 0.08 1.52 8.10 -51.92 -0.42 1.10 16 12 C -0.16 -2.46 7.45 -25.83 -0.19 -2.65 16 13 C -0.13 -1.55 3.75 -89.81 -0.34 -1.89 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 15 C 0.14 1.72 5.50 -4.04 -0.02 1.70 16 16 N -0.73 -8.03 5.55 -61.42 -0.34 -8.37 16 17 C 0.58 7.77 7.81 -12.57 -0.10 7.67 16 18 O -0.50 -8.47 13.69 5.27 0.07 -8.39 16 19 C -0.25 -2.87 6.31 -102.94 -0.65 -3.52 16 20 C 0.10 0.69 11.50 -16.64 -0.19 0.49 16 21 N -0.46 -3.04 7.20 30.81 0.22 -2.82 16 22 H 0.45 1.20 8.96 -182.84 -1.64 -0.44 16 23 N -0.28 -2.85 12.53 34.57 0.43 -2.42 16 24 C 0.17 2.10 7.11 -80.57 -0.57 1.53 16 25 C 0.19 2.34 6.62 -82.96 -0.55 1.79 16 26 C -0.14 -1.38 9.75 -39.10 -0.38 -1.77 16 27 C -0.09 -0.67 10.17 -39.32 -0.40 -1.07 16 28 C -0.17 -1.33 10.11 -39.37 -0.40 -1.72 16 29 C 0.10 1.11 11.17 -17.58 -0.20 0.91 16 30 N -0.41 -5.67 7.09 -9.79 -0.07 -5.74 16 31 C -0.15 -2.14 7.39 -25.93 -0.19 -2.33 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.36 8.40 5.79 -40.82 -0.24 8.17 16 34 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.39 3.12 7.43 -40.82 -0.30 2.82 16 39 H 0.19 0.49 7.48 -52.49 -0.39 0.09 16 40 H 0.14 1.11 8.04 -52.49 -0.42 0.69 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -37.75 381.54 -10.08 -47.84 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.20 Total: 7.71 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.73 Total: -5.08 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: 0.75 Total: -65.33 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.75 -10.08 -47.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086104730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.199 kcal (2) G-P(sol) polarization free energy of solvation -37.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds