Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48496 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47271 * 300.00071 * 3 2 1 6 6 H 1.48499 * 109.47059 * 59.99880 * 3 2 1 7 7 C 1.38810 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85132 * 25.32863 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52601 * 10 9 7 13 13 C 1.53777 * 87.08336 * 140.06028 * 12 10 9 14 14 H 1.09008 * 113.61204 * 89.11878 * 13 12 10 15 15 C 1.52998 * 113.61649 * 219.93585 * 13 12 10 16 16 N 1.46497 * 109.47203 * 185.00515 * 15 13 12 17 17 C 1.34774 * 119.99932 * 180.02562 * 16 15 13 18 18 O 1.21571 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.47678 * 120.00020 * 179.97438 * 17 16 15 20 20 C 1.39706 * 120.07461 * 359.72008 * 19 17 16 21 21 C 1.37736 * 119.91760 * 179.78646 * 20 19 17 22 22 C 1.39047 * 120.07584 * 0.47165 * 21 20 19 23 23 N 1.39867 * 119.91966 * 179.76072 * 22 21 20 24 24 C 1.34808 * 126.84621 * 0.02562 * 23 22 21 25 25 N 1.30816 * 108.02197 * 179.97438 * 24 23 22 26 26 C 1.33293 * 109.84717 * 359.97438 * 25 24 23 27 27 N 1.30727 * 109.01299 * 359.71600 * 26 25 24 28 28 C 1.39040 * 120.15935 * 359.78251 * 22 21 20 29 29 C 1.37724 * 120.08064 * 359.97438 * 28 22 21 30 30 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 31 31 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00212 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61673 * 254.61577 * 12 10 9 34 34 H 1.09005 * 113.61396 * 25.51405 * 12 10 9 35 35 H 1.09000 * 109.47114 * 305.00039 * 15 13 12 36 36 H 1.08997 * 109.46997 * 64.99916 * 15 13 12 37 37 H 0.97004 * 119.99910 * 359.97438 * 16 15 13 38 38 H 1.07991 * 120.04349 * 0.02562 * 20 19 17 39 39 H 1.08003 * 119.96158 * 180.22999 * 21 20 19 40 40 H 1.08002 * 125.99009 * 0.02562 * 24 23 22 41 41 H 1.07994 * 125.49372 * 180.02562 * 26 25 24 42 42 H 1.08006 * 119.95943 * 179.97438 * 28 22 21 43 43 H 1.08004 * 120.04400 * 179.97438 * 29 28 22 44 44 H 1.08993 * 113.61636 * 270.87622 * 30 13 12 45 45 H 1.09008 * 113.61006 * 139.97865 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0558 -3.5691 0.4321 12 6 1.2466 -4.8363 0.5628 13 6 1.8628 -5.6911 -0.5571 14 1 2.8070 -6.1597 -0.2794 15 6 0.8763 -6.6732 -1.1920 16 7 1.5822 -7.5189 -2.1577 17 6 0.9097 -8.4640 -2.8439 18 8 -0.2827 -8.6150 -2.6612 19 6 1.6212 -9.3161 -3.8178 20 6 2.9902 -9.1400 -4.0333 21 6 3.6515 -9.9395 -4.9392 22 6 2.9561 -10.9143 -5.6459 23 7 3.6299 -11.7211 -6.5687 24 6 4.9410 -11.6731 -6.8787 25 7 5.1769 -12.5888 -7.7826 26 6 4.0500 -13.2384 -8.0736 27 7 3.0769 -12.7477 -7.3516 28 6 1.5925 -11.0888 -5.4378 29 6 0.9258 -10.2964 -4.5299 30 6 2.0332 -4.3858 -1.3521 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 1.5533 -5.1406 1.5635 34 1 0.1681 -4.7074 0.4705 35 1 0.4356 -7.2985 -0.4155 36 1 0.0888 -6.1184 -1.7021 37 1 2.5336 -7.3981 -2.3037 38 1 3.5302 -8.3805 -3.4875 39 1 4.7106 -9.8064 -5.1036 40 1 5.6691 -10.9976 -6.4544 41 1 3.9569 -14.0440 -8.7868 42 1 1.0554 -11.8468 -5.9889 43 1 -0.1336 -10.4321 -4.3691 44 1 1.1699 -4.1338 -1.9679 45 1 2.9752 -4.3265 -1.8974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086112000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 121.421787 kcal Electronic energy + Delta-G solvation = -27143.685490 eV Core-core repulsion = 23164.331141 eV Total energy + Delta-G solvation = -3979.354350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89947 -40.58649 -39.14629 -38.34423 -34.91639 -34.70050 -33.36486 -32.25933 -31.49941 -30.61493 -30.03562 -27.46573 -25.17640 -25.07063 -24.03310 -23.81778 -22.49181 -21.74062 -21.12542 -20.75823 -19.24254 -19.06210 -17.97375 -17.07133 -16.58907 -16.43272 -16.15396 -15.62615 -15.42020 -15.04426 -14.84804 -14.78924 -14.69227 -14.26615 -14.02622 -13.70921 -13.60048 -13.20549 -13.14603 -12.94728 -12.81906 -11.98253 -11.88246 -11.67588 -11.45663 -11.35742 -11.27761 -10.88660 -10.72050 -10.58898 -10.48410 -10.37993 -10.16095 -10.02289 -9.87037 -9.73098 -9.55167 -9.22385 -8.93761 -8.90243 -6.99913 -5.81700 -3.10766 -0.15357 0.67314 1.21827 1.55920 2.30912 2.53432 2.93220 3.35321 3.39893 3.45399 3.47889 3.64731 3.75567 4.09219 4.23155 4.29781 4.40142 4.55068 4.62366 4.82583 4.87068 4.91701 4.93974 5.16416 5.29339 5.40807 5.42284 5.43782 5.45490 5.67466 5.74206 5.75475 5.77064 5.82751 5.88370 5.99292 6.04768 6.16011 6.24962 6.29913 6.35101 6.37276 6.53493 6.76873 7.06327 7.29326 7.38407 7.66180 7.98538 8.36777 9.47999 10.06082 10.40064 11.40673 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.001622 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.011154 B =17262.182011 C =18114.559108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.718 5.718 17 C 0.554 3.446 18 O -0.535 6.535 19 C -0.132 4.132 20 C -0.059 4.059 21 C -0.140 4.140 22 C 0.169 3.831 23 N -0.333 5.333 24 C 0.265 3.735 25 N -0.536 5.536 26 C 0.209 3.791 27 N -0.312 5.312 28 C -0.119 4.119 29 C -0.036 4.036 30 C -0.161 4.161 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.225 0.775 41 H 0.225 0.775 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 -26.663 -11.493 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.181 4.181 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.340 3.660 18 O -0.413 6.413 19 C -0.136 4.136 20 C -0.078 4.078 21 C -0.161 4.161 22 C 0.076 3.924 23 N -0.117 5.117 24 C -0.031 4.031 25 N -0.262 5.262 26 C -0.094 4.094 27 N -0.137 5.137 28 C -0.139 4.139 29 C -0.056 4.056 30 C -0.202 4.202 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.241 0.759 41 H 0.241 0.759 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.346 -26.905 -11.520 30.434 hybrid contribution 0.759 1.111 -0.089 1.349 sum 9.105 -25.793 -11.609 29.715 Atomic orbital electron populations 1.69668 1.05147 1.25669 1.57441 1.24772 0.95519 0.97806 1.02793 0.86123 0.78773 0.84096 0.77214 1.20537 1.21851 1.21830 1.19343 0.91099 0.84232 1.42929 0.91035 1.42417 1.05773 0.99882 1.87022 1.21516 0.95252 0.85086 0.92820 0.90736 1.23433 1.00968 0.96994 0.96729 1.22650 0.98437 0.94452 0.99178 0.89347 1.21507 0.95090 0.91791 0.90783 1.45975 1.12877 1.35768 1.42259 1.18118 0.86831 0.80304 0.80718 1.90807 1.14629 1.69650 1.66182 1.20162 0.94132 0.99241 1.00053 1.21162 0.93157 0.97584 0.95912 1.20720 1.00654 0.96238 0.98462 1.17752 0.92377 0.91731 0.90569 1.47745 1.07659 1.25916 1.30338 1.26309 0.85528 0.97398 0.93816 1.70663 1.28830 1.09920 1.16738 1.26248 0.85324 0.99526 0.98260 1.78171 1.22659 1.03171 1.09696 1.20924 0.91880 1.01337 0.99761 1.21239 1.01090 0.91465 0.91776 1.23959 1.01319 0.94781 1.00171 0.93473 0.78055 0.91933 0.90036 0.91446 0.90898 0.76558 0.84080 0.84257 0.75861 0.75911 0.83696 0.83345 0.90292 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.34 5.41 -52.64 -0.28 -17.62 16 10 C 0.17 3.05 4.47 -67.12 -0.30 2.75 16 11 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 12 C -0.14 -2.12 7.39 -25.92 -0.19 -2.31 16 13 C -0.13 -1.55 3.75 -89.81 -0.34 -1.88 16 14 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 15 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 16 N -0.72 -7.14 5.51 -61.31 -0.34 -7.48 16 17 C 0.55 6.39 7.77 -12.41 -0.10 6.30 16 18 O -0.53 -8.27 16.34 5.30 0.09 -8.18 16 19 C -0.13 -1.15 5.88 -104.95 -0.62 -1.77 16 20 C -0.06 -0.35 9.53 -39.22 -0.37 -0.72 16 21 C -0.14 -0.73 9.45 -39.47 -0.37 -1.10 16 22 C 0.17 1.24 6.70 -83.59 -0.56 0.68 16 23 N -0.33 -2.60 3.81 -11.77 -0.04 -2.65 16 24 C 0.26 1.64 11.97 -90.32 -1.08 0.56 16 25 N -0.54 -4.29 11.19 -15.73 -0.18 -4.47 16 26 C 0.21 1.51 13.03 -91.75 -1.20 0.32 16 27 N -0.31 -2.78 12.03 29.30 0.35 -2.43 16 28 C -0.12 -0.94 9.66 -39.47 -0.38 -1.33 16 29 C -0.04 -0.31 9.58 -39.22 -0.38 -0.69 16 30 C -0.16 -2.48 7.43 -25.92 -0.19 -2.67 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.39 10.02 7.91 -40.82 -0.32 9.70 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.01 7.85 -51.93 -0.41 0.61 16 37 H 0.40 2.81 6.50 -40.82 -0.27 2.55 16 38 H 0.14 0.49 6.39 -52.49 -0.34 0.15 16 39 H 0.14 0.28 6.79 -52.48 -0.36 -0.08 16 40 H 0.23 0.37 7.08 -52.49 -0.37 0.00 16 41 H 0.22 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.15 1.12 7.72 -52.48 -0.41 0.71 16 43 H 0.15 1.28 7.64 -52.48 -0.40 0.88 16 44 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 45 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -35.47 384.54 -11.03 -46.50 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.78 Total: 8.22 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -6.34 Total: -7.58 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.23 Total: -61.72 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.47 -11.03 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086112000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.917 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds