Wall clock time and date at job start Sat Apr 11 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 119.99725 * 2 1 4 4 H 1.48503 * 109.46953 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.46802 * 29.99768 * 3 2 1 6 6 H 1.48491 * 109.47280 * 149.99743 * 3 2 1 7 7 C 1.38807 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00038 * 179.97438 * 9 7 2 11 11 H 1.08990 * 112.90790 * 336.24869 * 10 9 7 12 12 C 1.53781 * 113.61011 * 107.50021 * 10 9 7 13 13 C 1.53789 * 87.07967 * 139.98115 * 12 10 9 14 14 H 1.08999 * 113.68559 * 89.12537 * 13 12 10 15 15 C 1.53001 * 113.61194 * 220.01532 * 13 12 10 16 16 N 1.46493 * 109.47084 * 272.49380 * 15 13 12 17 17 C 1.34784 * 119.99864 * 180.02562 * 16 15 13 18 18 O 1.21561 * 119.99531 * 359.72923 * 17 16 15 19 19 C 1.47829 * 119.99933 * 179.72659 * 17 16 15 20 20 N 1.34565 * 126.02597 * 359.69248 * 19 17 16 21 21 C 1.30870 * 107.29326 * 179.83347 * 20 19 17 22 22 N 1.34894 * 107.58624 * 0.42146 * 21 20 19 23 23 C 1.40148 * 125.76794 * 179.72874 * 22 21 20 24 24 C 1.38847 * 120.06748 * 359.70109 * 23 22 21 25 25 C 1.38119 * 119.92872 * 179.77106 * 24 23 22 26 26 C 1.38290 * 120.06679 * 0.48293 * 25 24 23 27 27 C 1.38283 * 120.13306 * 359.79452 * 26 25 24 28 28 C 1.38114 * 120.07073 * 359.94885 * 27 26 25 29 29 N 1.28849 * 108.45847 * 359.73374 * 22 21 20 30 30 C 1.53780 * 87.07820 * 334.56545 * 13 12 10 31 31 H 0.97000 * 120.00459 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99839 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.62037 * 25.43403 * 12 10 9 34 34 H 1.09001 * 113.61652 * 254.52748 * 12 10 9 35 35 H 1.09007 * 109.46593 * 152.49637 * 15 13 12 36 36 H 1.09006 * 109.47216 * 32.50095 * 15 13 12 37 37 H 0.97000 * 120.00740 * 359.72857 * 16 15 13 38 38 H 1.07995 * 126.20873 * 180.15725 * 21 20 19 39 39 H 1.07994 * 120.03525 * 0.02562 * 24 23 22 40 40 H 1.07995 * 119.96643 * 180.25648 * 25 24 23 41 41 H 1.07997 * 119.93074 * 179.76869 * 26 25 24 42 42 H 1.08002 * 119.96167 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.03420 * 180.02562 * 28 27 26 44 44 H 1.08998 * 113.61735 * 139.98183 * 30 13 12 45 45 H 1.08997 * 113.61465 * 270.79745 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0662 -3.5646 -0.4038 12 6 1.9993 -4.4020 1.3444 13 6 1.8483 -5.6975 0.5296 14 1 2.7982 -6.1644 0.2694 15 6 0.8453 -6.6851 1.1293 16 7 1.5265 -7.5430 2.1019 17 6 0.8365 -8.4955 2.7601 18 8 -0.3522 -8.6393 2.5503 19 6 1.5253 -9.3652 3.7371 20 7 2.8313 -9.3163 4.0575 21 6 3.0460 -10.2418 4.9575 22 7 1.8734 -10.8683 5.1857 23 6 1.6715 -11.9285 6.0797 24 6 2.7352 -12.4258 6.8207 25 6 2.5320 -13.4676 7.7045 26 6 1.2728 -14.0218 7.8444 27 6 0.2127 -13.5324 7.1035 28 6 0.4085 -12.4874 6.2220 29 7 0.9705 -10.3273 4.4426 30 6 1.2604 -4.8288 -0.5948 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0005 33 1 1.1211 -4.1568 1.9415 34 1 2.9274 -4.3499 1.9137 35 1 0.4225 -7.3007 0.3352 36 1 0.0465 -6.1348 1.6267 37 1 2.4751 -7.4285 2.2690 38 1 3.9915 -10.4663 5.4287 39 1 3.7195 -11.9958 6.7091 40 1 3.3581 -13.8521 8.2842 41 1 1.1172 -14.8388 8.5333 42 1 -0.7695 -13.9676 7.2147 43 1 -0.4200 -12.1053 5.6440 44 1 1.5918 -5.1211 -1.5912 45 1 0.1799 -4.7015 -0.5287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086116259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:31 Heat of formation + Delta-G solvation = 124.581806 kcal Electronic energy + Delta-G solvation = -27151.928353 eV Core-core repulsion = 23172.711032 eV Total energy + Delta-G solvation = -3979.217321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.08044 -39.98710 -39.53533 -38.35184 -35.12293 -34.68215 -33.25666 -32.62077 -31.54902 -30.49305 -30.00727 -27.69351 -25.11404 -24.99479 -24.55331 -23.73468 -22.61869 -21.90930 -20.99929 -20.62722 -19.36038 -18.93610 -17.59527 -17.14459 -16.99383 -16.89715 -16.26250 -15.62051 -15.48205 -15.26200 -14.85721 -14.76084 -14.57415 -14.16592 -13.96171 -13.68316 -13.49605 -13.21166 -12.89391 -12.76439 -12.36807 -11.88252 -11.77816 -11.76003 -11.49703 -11.35776 -11.20424 -10.91316 -10.82335 -10.56160 -10.39050 -10.37835 -10.13010 -10.00237 -9.78696 -9.75502 -9.47413 -9.15422 -8.98966 -8.83599 -6.92864 -5.75246 -3.03921 0.05371 0.59783 1.33923 1.61940 1.75802 2.86055 3.04391 3.18771 3.44985 3.50066 3.51916 3.65404 3.86080 4.09028 4.24939 4.38408 4.44236 4.61083 4.62367 4.76915 4.90063 5.01330 5.03417 5.25316 5.27827 5.46509 5.49185 5.50165 5.55725 5.62629 5.76283 5.84204 5.86802 5.87840 5.95977 5.98297 6.12912 6.25564 6.29195 6.34864 6.40694 6.46604 6.65265 6.87106 7.15970 7.29714 7.63053 7.72130 8.06282 8.43354 9.54394 10.13110 10.47307 11.47160 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.001549 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.631309 B =18067.986327 C =18356.745781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.076 0.924 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.090 0.910 15 C 0.133 3.867 16 N -0.700 5.700 17 C 0.611 3.389 18 O -0.518 6.518 19 C 0.156 3.844 20 N -0.474 5.474 21 C 0.198 3.802 22 N -0.253 5.253 23 C 0.128 3.872 24 C -0.121 4.121 25 C -0.097 4.097 26 C -0.114 4.114 27 C -0.098 4.098 28 C -0.102 4.102 29 N -0.252 5.252 30 C -0.141 4.141 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.230 0.770 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.285 -32.577 15.984 37.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.094 0.906 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.109 0.891 15 C 0.010 3.990 16 N -0.352 5.352 17 C 0.392 3.608 18 O -0.391 6.391 19 C -0.123 4.123 20 N -0.198 5.198 21 C -0.096 4.096 22 N -0.041 5.041 23 C 0.037 3.963 24 C -0.142 4.142 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.117 4.117 28 C -0.121 4.121 29 N -0.088 5.088 30 C -0.181 4.181 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.246 0.754 38 H 0.246 0.754 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.081 0.919 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.071 -32.312 15.529 36.361 hybrid contribution 0.885 0.785 0.411 1.253 sum 6.956 -31.528 15.940 36.006 Atomic orbital electron populations 1.69659 1.05132 1.25706 1.57533 1.24762 0.95509 0.97758 1.02898 0.86194 0.78662 0.83862 0.77496 1.21712 1.21797 1.20754 1.19314 0.91086 0.84272 1.42820 0.91085 1.42414 1.05770 0.99886 1.86998 1.21523 0.95319 0.85017 0.92803 0.90625 1.23957 1.01493 0.94812 0.99945 1.22653 0.98426 0.94332 0.99242 0.89147 1.21571 0.95454 0.91443 0.90530 1.45750 1.13840 1.33880 1.41766 1.16233 0.85501 0.79697 0.79408 1.90850 1.14007 1.69719 1.64496 1.23965 0.88636 0.98137 1.01590 1.71358 1.14687 1.20277 1.13523 1.26596 0.93335 0.92049 0.97627 1.44592 1.06976 1.24413 1.28159 1.17673 0.96233 0.89234 0.93162 1.20875 0.97633 0.98454 0.97221 1.21046 0.97898 0.95230 0.97409 1.21397 0.92745 0.99915 0.99170 1.21180 0.99952 0.95491 0.95075 1.21126 0.95645 0.96300 0.99058 1.74387 1.17574 1.10450 1.06376 1.23448 1.01073 0.96942 0.96662 0.93477 0.78057 0.90309 0.92651 0.91267 0.90709 0.75373 0.75427 0.84584 0.84417 0.84928 0.84511 0.83836 0.91939 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.96 5.40 -52.64 -0.28 -18.25 16 10 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 11 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 12 C -0.16 -2.73 7.43 -25.91 -0.19 -2.92 16 13 C -0.13 -1.75 3.76 -89.80 -0.34 -2.09 16 14 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.13 1.83 5.51 -4.04 -0.02 1.80 16 16 N -0.70 -9.23 5.55 -61.25 -0.34 -9.57 16 17 C 0.61 9.34 7.83 -12.33 -0.10 9.24 16 18 O -0.52 -9.56 17.09 5.31 0.09 -9.47 16 19 C 0.16 2.17 7.96 -156.30 -1.24 0.92 16 20 N -0.47 -5.42 11.09 -12.29 -0.14 -5.56 16 21 C 0.20 1.63 11.93 -90.20 -1.08 0.55 16 22 N -0.25 -2.49 3.52 -11.77 -0.04 -2.53 16 23 C 0.13 0.96 6.67 -83.60 -0.56 0.40 16 24 C -0.12 -0.53 9.45 -39.40 -0.37 -0.90 16 25 C -0.10 -0.31 10.04 -39.61 -0.40 -0.71 16 26 C -0.11 -0.39 10.04 -39.55 -0.40 -0.79 16 27 C -0.10 -0.47 10.04 -39.61 -0.40 -0.87 16 28 C -0.10 -0.74 9.61 -39.40 -0.38 -1.12 16 29 N -0.25 -3.37 11.32 32.08 0.36 -3.01 16 30 C -0.14 -2.27 7.39 -25.92 -0.19 -2.46 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.39 10.34 7.93 -40.82 -0.32 10.01 16 33 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.14 7.84 -51.93 -0.41 0.74 16 37 H 0.41 4.74 8.18 -40.82 -0.33 4.41 16 38 H 0.23 0.64 7.01 -52.49 -0.37 0.27 16 39 H 0.14 0.22 6.71 -52.49 -0.35 -0.13 16 40 H 0.14 0.10 8.06 -52.49 -0.42 -0.33 16 41 H 0.13 0.16 8.06 -52.49 -0.42 -0.27 16 42 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.14 1.21 7.68 -52.48 -0.40 0.81 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -35.90 387.82 -10.95 -46.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.94 Total: 9.34 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -6.21 Total: -3.43 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: 0.29 Total: -66.61 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.90 -10.95 -46.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086116259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.436 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds