Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00371 * 2 1 4 4 H 1.48493 * 109.47187 * 270.00305 * 3 2 1 5 5 H 1.48506 * 109.46742 * 29.99613 * 3 2 1 6 6 H 1.48497 * 109.47398 * 149.99867 * 3 2 1 7 7 C 1.38814 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99549 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00014 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00041 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.90796 * 336.24420 * 10 9 7 12 12 C 1.53773 * 113.62036 * 107.50118 * 10 9 7 13 13 C 1.53779 * 87.08269 * 139.97955 * 12 10 9 14 14 H 1.08994 * 113.68962 * 89.13220 * 13 12 10 15 15 C 1.53006 * 113.61560 * 220.01950 * 13 12 10 16 16 N 1.46500 * 109.47137 * 272.49929 * 15 13 12 17 17 C 1.34774 * 120.00144 * 179.97438 * 16 15 13 18 18 O 1.21598 * 119.99803 * 359.97438 * 17 16 15 19 19 C 1.47511 * 119.99914 * 180.02562 * 17 16 15 20 20 C 1.36626 * 125.76307 * 179.97438 * 19 17 16 21 21 N 1.35077 * 106.79325 * 179.97438 * 20 19 17 22 22 C 1.40222 * 126.61474 * 180.02562 * 21 20 19 23 23 C 1.38825 * 120.06399 * 359.97438 * 22 21 20 24 24 C 1.38124 * 119.93789 * 180.02562 * 23 22 21 25 25 C 1.38285 * 120.05945 * 359.97438 * 24 23 22 26 26 C 1.38281 * 120.13371 * 359.97438 * 25 24 23 27 27 C 1.38119 * 120.06137 * 0.02570 * 26 25 24 28 28 N 1.40219 * 106.77218 * 0.26351 * 21 20 19 29 29 N 1.28754 * 108.38233 * 359.55261 * 28 21 20 30 30 C 1.53778 * 87.08342 * 334.56804 * 13 12 10 31 31 H 0.97008 * 120.00176 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00269 * 0.02562 * 9 7 2 33 33 H 1.09006 * 113.61221 * 25.42976 * 12 10 9 34 34 H 1.08997 * 113.61440 * 254.53562 * 12 10 9 35 35 H 1.08994 * 109.46854 * 152.49836 * 15 13 12 36 36 H 1.09001 * 109.46642 * 32.49453 * 15 13 12 37 37 H 0.96999 * 119.99870 * 359.97438 * 16 15 13 38 38 H 1.07998 * 126.60018 * 0.02562 * 20 19 17 39 39 H 1.08002 * 120.03522 * 0.04253 * 23 22 21 40 40 H 1.07992 * 119.97431 * 180.25192 * 24 23 22 41 41 H 1.08001 * 119.93139 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.96485 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.02969 * 179.97438 * 27 26 25 44 44 H 1.08998 * 113.61765 * 139.97673 * 30 13 12 45 45 H 1.09000 * 113.61752 * 270.88770 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5284 -3.2978 0.4049 12 6 4.7865 -2.7931 -1.3439 13 6 5.9842 -3.3097 -0.5294 14 1 5.9138 -4.3657 -0.2689 15 6 7.3409 -2.9350 -1.1295 16 7 7.7429 -3.9542 -2.1020 17 6 8.9120 -3.8325 -2.7614 18 8 9.6329 -2.8765 -2.5494 19 6 9.3165 -4.8585 -3.7410 20 6 10.4702 -4.8529 -4.4729 21 7 10.4505 -5.9639 -5.2410 22 6 11.4363 -6.3678 -6.1528 23 6 12.5743 -5.5939 -6.3348 24 6 13.5434 -5.9939 -7.2340 25 6 13.3810 -7.1644 -7.9523 26 6 12.2490 -7.9379 -7.7723 27 6 11.2766 -7.5428 -6.8745 28 7 9.2517 -6.6325 -4.9547 29 7 8.6127 -5.9571 -4.0641 30 6 5.5262 -2.3659 0.5950 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3622 -0.0004 33 1 5.0130 -1.9100 -1.9414 34 1 4.2771 -3.5709 -1.9127 35 1 8.0855 -2.8764 -0.3357 36 1 7.2634 -1.9684 -1.6273 37 1 7.1676 -4.7166 -2.2714 38 1 11.2484 -4.1047 -4.4424 39 1 12.7020 -4.6800 -5.7736 40 1 14.4309 -5.3945 -7.3731 41 1 14.1399 -7.4751 -8.6551 42 1 12.1248 -8.8513 -8.3350 43 1 10.3925 -8.1471 -6.7347 44 1 5.6140 -2.7989 1.5914 45 1 5.9549 -1.3660 0.5276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086134667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 128.552882 kcal Electronic energy + Delta-G solvation = -27146.314619 eV Core-core repulsion = 23167.269497 eV Total energy + Delta-G solvation = -3979.045122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88095 -40.02070 -39.56799 -38.48668 -35.24662 -34.76292 -33.31077 -32.10236 -31.33844 -30.78261 -30.30930 -27.71251 -25.17668 -24.91173 -24.54873 -23.60589 -22.65095 -21.98580 -20.95923 -20.64830 -19.53730 -18.98162 -17.45461 -17.38091 -16.67589 -16.64660 -16.26434 -15.75073 -15.51877 -15.30415 -14.94887 -14.70694 -14.52087 -14.22152 -14.20200 -13.80774 -13.66833 -13.21231 -12.83315 -12.66450 -12.47316 -12.21288 -11.94798 -11.92175 -11.77241 -11.69863 -11.60570 -11.54095 -10.89198 -10.53597 -10.45127 -10.13178 -10.06118 -9.99230 -9.80281 -9.79259 -9.53049 -9.20653 -9.03956 -8.87121 -7.24880 -5.76558 -3.11876 -0.13609 0.56100 1.17034 1.34069 1.41895 2.94260 2.99246 3.05533 3.39008 3.42163 3.46796 3.71140 3.79224 4.07399 4.26929 4.30526 4.44931 4.52743 4.59426 4.59947 4.78801 4.87079 4.89830 4.90309 5.13449 5.21064 5.26880 5.42239 5.44807 5.55520 5.62263 5.67009 5.73393 5.74095 5.82334 5.83766 5.86082 6.17923 6.20874 6.23482 6.25710 6.36828 6.55127 6.71317 7.00935 7.24585 7.51550 7.99274 8.00294 8.43279 9.21338 9.94076 10.13995 11.41689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.001600 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.927780 B =17494.214421 C =17621.869924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.171 3.829 11 H 0.084 0.916 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.093 0.907 15 C 0.132 3.868 16 N -0.706 5.706 17 C 0.602 3.398 18 O -0.540 6.540 19 C -0.090 4.090 20 C 0.093 3.907 21 N -0.312 5.312 22 C 0.133 3.867 23 C -0.125 4.125 24 C -0.095 4.095 25 C -0.114 4.114 26 C -0.098 4.098 27 C -0.104 4.104 28 N -0.054 5.054 29 N -0.194 5.194 30 C -0.145 4.145 31 H 0.259 0.741 32 H 0.362 0.638 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.208 0.792 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.065 0.935 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.763 -16.524 -15.107 38.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.102 0.898 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.111 0.889 15 C 0.009 3.991 16 N -0.356 5.356 17 C 0.385 3.615 18 O -0.416 6.416 19 C -0.228 4.228 20 C -0.061 4.061 21 N -0.090 5.090 22 C 0.041 3.959 23 C -0.145 4.145 24 C -0.114 4.114 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.124 4.124 28 N -0.033 5.033 29 N -0.068 5.068 30 C -0.184 4.184 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.225 0.775 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.084 0.916 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 31.048 -17.056 -15.169 38.536 hybrid contribution 0.954 1.675 -0.031 1.927 sum 32.002 -15.381 -15.200 38.623 Atomic orbital electron populations 1.69706 1.05128 1.25836 1.57409 1.24691 0.95251 0.97250 1.01930 0.86552 0.79240 0.84965 0.77808 1.21076 1.21725 1.20260 1.19151 0.80731 0.94779 1.43108 0.89122 1.42758 1.04073 1.02037 1.88805 1.21512 0.89530 0.90018 0.92935 0.89778 1.23918 0.95930 1.00568 0.99775 1.22653 0.92955 1.00081 0.98988 0.88888 1.21522 0.95913 0.90964 0.90706 1.45837 1.20586 1.27462 1.41754 1.16677 0.81754 0.83580 0.79473 1.90823 1.53306 1.31606 1.65883 1.21544 0.95697 0.98808 1.06776 1.23382 1.00158 0.90893 0.91651 1.47654 1.16265 1.16928 1.28177 1.17640 0.88140 0.97036 0.93053 1.20998 0.92711 1.00241 1.00588 1.21072 0.98553 0.96732 0.95054 1.21398 0.97920 0.94646 0.99320 1.21158 0.93142 1.00120 0.97218 1.21015 1.00833 0.94749 0.95778 1.82093 0.90379 1.16894 1.13962 1.74670 1.22900 1.03101 1.06089 1.23468 0.98919 0.98930 0.97114 0.93064 0.80461 0.90430 0.92151 0.91315 0.90946 0.75491 0.77528 0.84631 0.84429 0.84899 0.84471 0.83959 0.91589 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.26 27.73 -169.99 -4.71 17.55 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.25 -7.00 10.45 -15.06 -0.16 -7.16 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.74 -17.37 5.20 -52.64 -0.27 -17.64 16 10 C 0.17 3.19 4.48 -67.12 -0.30 2.89 16 11 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 12 C -0.16 -2.57 7.43 -25.92 -0.19 -2.76 16 13 C -0.13 -1.63 3.75 -89.81 -0.34 -1.97 16 14 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 16 N -0.71 -8.43 5.55 -61.36 -0.34 -8.77 16 17 C 0.60 7.76 7.82 -12.48 -0.10 7.67 16 18 O -0.54 -8.21 16.86 5.28 0.09 -8.12 16 19 C -0.09 -1.03 6.99 -83.54 -0.58 -1.62 16 20 C 0.09 0.83 10.60 -16.71 -0.18 0.66 16 21 N -0.31 -2.88 3.82 -10.42 -0.04 -2.92 16 22 C 0.13 0.94 6.69 -83.59 -0.56 0.39 16 23 C -0.12 -0.61 9.47 -39.41 -0.37 -0.99 16 24 C -0.10 -0.33 10.04 -39.61 -0.40 -0.73 16 25 C -0.11 -0.37 10.04 -39.55 -0.40 -0.76 16 26 C -0.10 -0.39 10.04 -39.61 -0.40 -0.79 16 27 C -0.10 -0.64 9.68 -39.41 -0.38 -1.02 16 28 N -0.05 -0.62 13.12 60.35 0.79 0.17 16 29 N -0.19 -2.35 12.03 32.85 0.40 -1.95 16 30 C -0.14 -2.14 7.39 -25.92 -0.19 -2.34 16 31 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 32 H 0.36 8.41 5.78 -40.82 -0.24 8.18 16 33 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.99 7.84 -51.93 -0.41 0.59 16 37 H 0.41 4.43 8.16 -40.82 -0.33 4.09 16 38 H 0.21 1.19 7.13 -52.49 -0.37 0.82 16 39 H 0.14 0.43 6.81 -52.49 -0.36 0.07 16 40 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 41 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 42 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.14 0.89 7.73 -52.49 -0.41 0.48 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -35.08 385.56 -8.09 -43.17 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.91 Total: 8.25 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.66 Total: -6.87 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 1.31 Total: -59.78 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.08 -8.09 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086134667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.719 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds