Wall clock time and date at job start Sat Apr 11 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47126 * 269.99915 * 3 2 1 5 5 H 1.48501 * 109.46943 * 30.00206 * 3 2 1 6 6 H 1.48499 * 109.46789 * 150.00076 * 3 2 1 7 7 C 1.38809 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00436 * 179.97438 * 9 7 2 11 11 H 1.09010 * 112.84866 * 23.79860 * 10 9 7 12 12 C 1.53781 * 113.61789 * 154.99468 * 10 9 7 13 13 C 1.53781 * 87.08182 * 139.97940 * 12 10 9 14 14 H 1.09006 * 113.61188 * 89.19835 * 13 12 10 15 15 C 1.52997 * 113.61747 * 220.02065 * 13 12 10 16 16 N 1.46505 * 109.47212 * 183.47137 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21606 * 120.00433 * 0.02562 * 17 16 15 19 19 C 1.47317 * 119.99724 * 180.02562 * 17 16 15 20 20 C 1.37919 * 126.80268 * 359.68998 * 19 17 16 21 21 N 1.34200 * 107.89053 * 179.83616 * 20 19 17 22 22 H 0.97000 * 125.16722 * 180.14597 * 21 20 19 23 23 N 1.39766 * 109.66678 * 0.43735 * 21 20 19 24 24 C 1.31377 * 109.07315 * 359.72592 * 23 21 20 25 25 C 1.48265 * 126.51368 * 180.02562 * 24 23 21 26 26 C 1.39819 * 120.90716 * 144.69979 * 25 24 23 27 27 C 1.37968 * 119.01407 * 179.75837 * 26 25 24 28 28 N 1.31933 * 120.88453 * 0.53007 * 27 26 25 29 29 C 1.31926 * 122.01755 * 359.72196 * 28 27 26 30 30 C 1.37969 * 120.88759 * 0.02562 * 29 28 27 31 31 C 1.53785 * 87.17639 * 334.61363 * 13 12 10 32 32 H 0.97005 * 120.00056 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99240 * 359.97438 * 9 7 2 34 34 H 1.09004 * 113.61071 * 25.43250 * 12 10 9 35 35 H 1.08993 * 113.69087 * 254.54000 * 12 10 9 36 36 H 1.09002 * 109.47153 * 63.47130 * 15 13 12 37 37 H 1.09001 * 109.46832 * 303.47320 * 15 13 12 38 38 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 39 39 H 1.07997 * 126.05928 * 359.97438 * 20 19 17 40 40 H 1.07999 * 120.48905 * 359.97438 * 26 25 24 41 41 H 1.08000 * 119.55542 * 180.24959 * 27 26 25 42 42 H 1.07997 * 119.56033 * 179.97438 * 29 28 27 43 43 H 1.07997 * 120.49941 * 179.97438 * 30 29 28 44 44 H 1.08990 * 113.61776 * 139.93339 * 31 13 12 45 45 H 1.09003 * 113.61076 * 270.84347 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 3.0656 -3.5638 0.4059 12 6 1.2601 -4.8288 0.5961 13 6 1.8478 -5.6976 -0.5284 14 1 2.7977 -6.1646 -0.2682 15 6 0.8447 -6.6852 -1.1278 16 7 1.5176 -7.5189 -2.1270 17 6 0.8260 -8.4669 -2.7898 18 8 -0.3567 -8.6301 -2.5587 19 6 1.5029 -9.3056 -3.7941 20 6 2.8283 -9.2380 -4.1692 21 7 3.0399 -10.1751 -5.1063 22 1 3.8889 -10.3470 -5.5428 23 7 1.8496 -10.8614 -5.3624 24 6 0.8995 -10.3733 -4.5974 25 6 -0.5142 -10.8181 -4.5543 26 6 -1.2288 -10.8242 -3.3526 27 6 -2.5440 -11.2411 -3.3582 28 7 -3.1233 -11.6396 -4.4746 29 6 -2.4834 -11.6540 -5.6281 30 6 -1.1674 -11.2486 -5.7132 31 6 2.0009 -4.4033 -1.3447 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 0.1797 -4.7002 0.5292 35 1 1.5906 -5.1221 1.5925 36 1 0.0318 -6.1349 -1.6017 37 1 0.4421 -7.3188 -0.3375 38 1 2.4611 -7.3890 -2.3110 39 1 3.5660 -8.5538 -3.7767 40 1 -0.7593 -10.5041 -2.4342 41 1 -3.1054 -11.2455 -2.4356 42 1 -2.9963 -11.9885 -6.5178 43 1 -0.6494 -11.2634 -6.6607 44 1 2.9296 -4.3527 -1.9129 45 1 1.1234 -4.1582 -1.9432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086137176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:39 Heat of formation + Delta-G solvation = 107.412569 kcal Electronic energy + Delta-G solvation = -27855.826814 eV Core-core repulsion = 23875.864979 eV Total energy + Delta-G solvation = -3979.961835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67364 -39.96193 -39.50903 -38.35086 -34.83353 -33.88021 -33.32053 -31.44619 -31.05286 -30.88043 -30.09597 -27.28238 -25.13257 -24.60569 -24.08850 -23.67871 -23.01079 -21.20035 -20.82580 -20.20176 -19.22621 -18.74785 -17.09962 -16.92094 -16.68857 -16.30350 -16.03419 -15.90190 -15.46273 -14.98888 -14.81732 -14.59146 -14.29370 -14.09468 -13.88596 -13.69587 -13.53652 -13.25401 -13.03628 -12.93209 -11.98704 -11.91499 -11.84767 -11.47895 -11.41339 -11.26437 -10.86189 -10.83419 -10.56665 -10.31681 -10.17713 -9.99055 -9.86682 -9.63890 -9.56282 -9.49307 -9.25940 -9.08099 -8.95259 -8.88858 -6.99111 -5.80796 -3.09862 0.61589 1.05366 1.07320 1.96223 2.15134 3.08271 3.21095 3.40397 3.45381 3.47472 3.71366 3.79881 4.09184 4.34872 4.54986 4.56093 4.75046 4.81696 4.90044 4.93650 4.97736 5.05346 5.08075 5.20296 5.43818 5.46246 5.47419 5.54038 5.71750 5.79583 5.82559 5.90009 5.97003 6.06213 6.10683 6.22719 6.28295 6.32501 6.41491 6.54510 6.55506 6.56338 6.78957 6.93943 7.07801 7.43295 7.66036 7.84064 8.15837 8.37721 9.48721 10.07090 10.40971 11.41497 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.001954 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.894903 B =14327.641948 C =15104.631097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.134 3.866 16 N -0.721 5.721 17 C 0.588 3.412 18 O -0.535 6.535 19 C -0.274 4.274 20 C 0.110 3.890 21 N -0.461 5.461 22 H 0.446 0.554 23 N -0.276 5.276 24 C 0.167 3.833 25 C 0.014 3.986 26 C -0.103 4.103 27 C 0.091 3.909 28 N -0.479 5.479 29 C 0.086 3.914 30 C -0.143 4.143 31 C -0.161 4.161 32 H 0.256 0.744 33 H 0.386 0.614 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.396 0.604 39 H 0.192 0.808 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.135 0.865 44 H 0.052 0.948 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -25.614 -9.429 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.105 0.895 15 C 0.011 3.989 16 N -0.371 5.371 17 C 0.375 3.625 18 O -0.413 6.413 19 C -0.289 4.289 20 C -0.040 4.040 21 N -0.167 5.167 22 H 0.291 0.709 23 N -0.097 5.097 24 C -0.002 4.002 25 C 0.004 3.996 26 C -0.124 4.124 27 C -0.066 4.066 28 N -0.188 5.188 29 C -0.071 4.071 30 C -0.164 4.164 31 C -0.203 4.203 32 H 0.066 0.934 33 H 0.220 0.780 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.208 0.792 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.174 0.826 43 H 0.153 0.847 44 H 0.071 0.929 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.934 -26.633 -10.081 28.901 hybrid contribution 2.024 1.955 0.077 2.815 sum 6.959 -24.678 -10.004 27.523 Atomic orbital electron populations 1.69659 1.05134 1.25785 1.57335 1.24777 0.95528 0.97809 1.02814 0.86194 0.78650 0.83838 0.77512 1.21714 1.21738 1.20749 1.19289 0.91034 0.84250 1.43046 0.91128 1.42414 1.05788 0.99883 1.86962 1.21547 0.95288 0.85071 0.92733 0.90739 1.23440 1.01103 0.96961 0.96670 1.22639 0.98364 0.94409 0.99235 0.89458 1.21450 0.95417 0.91915 0.90113 1.45876 1.13456 1.36237 1.41517 1.17124 0.86192 0.79394 0.79798 1.90759 1.14993 1.69178 1.66410 1.21356 0.93324 1.05968 1.08301 1.23094 0.97185 0.92792 0.90943 1.45973 1.11166 1.27282 1.32236 0.70899 1.77364 0.90772 1.18754 1.22772 1.21675 0.92684 0.93028 0.92763 1.17954 0.88837 0.98430 0.94376 1.22596 0.95403 0.95170 0.99200 1.22712 0.92298 0.95040 0.96535 1.67597 1.38803 1.13377 0.99046 1.22598 0.91430 0.97112 0.95984 1.22170 0.96316 0.99410 0.98524 1.23982 1.01287 0.95024 0.99964 0.93411 0.78041 0.90059 0.91989 0.91044 0.91558 0.77061 0.79151 0.82691 0.82406 0.82645 0.84710 0.92878 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.71 -17.36 5.40 -52.55 -0.28 -17.64 16 10 C 0.17 3.06 4.48 -67.03 -0.30 2.76 16 11 H 0.07 1.36 8.10 -51.92 -0.42 0.94 16 12 C -0.14 -2.12 7.40 -25.92 -0.19 -2.31 16 13 C -0.13 -1.53 3.75 -89.81 -0.34 -1.86 16 14 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 15 C 0.13 1.57 5.50 -4.04 -0.02 1.55 16 16 N -0.72 -7.03 5.55 -61.42 -0.34 -7.37 16 17 C 0.59 6.85 7.71 -12.57 -0.10 6.75 16 18 O -0.53 -7.86 12.49 5.27 0.07 -7.79 16 19 C -0.27 -2.69 6.28 -102.95 -0.65 -3.34 16 20 C 0.11 0.64 11.50 -16.63 -0.19 0.45 16 21 N -0.46 -2.71 7.20 30.81 0.22 -2.48 16 22 H 0.45 0.95 8.96 -182.85 -1.64 -0.69 16 23 N -0.28 -2.69 12.65 34.57 0.44 -2.25 16 24 C 0.17 1.85 6.98 -80.57 -0.56 1.29 16 25 C 0.01 0.17 5.75 -104.59 -0.60 -0.44 16 26 C -0.10 -1.21 7.89 -39.09 -0.31 -1.52 16 27 C 0.09 1.03 11.17 -17.61 -0.20 0.83 16 28 N -0.48 -5.73 10.35 -13.35 -0.14 -5.87 16 29 C 0.09 0.87 11.17 -17.61 -0.20 0.67 16 30 C -0.14 -1.47 9.88 -39.09 -0.39 -1.85 16 31 C -0.16 -2.48 7.45 -25.82 -0.19 -2.67 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.39 10.06 7.92 -40.82 -0.32 9.74 16 34 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.40 2.68 7.43 -40.82 -0.30 2.38 16 39 H 0.19 0.28 7.48 -52.49 -0.39 -0.11 16 40 H 0.16 1.88 5.77 -52.49 -0.30 1.58 16 41 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -35.40 382.36 -10.18 -45.58 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.13 Total: 9.20 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -4.48 Total: -6.97 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.62 Total: -62.78 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.40 -10.18 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086137176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.988 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds