Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47249 * 269.99435 * 3 2 1 5 5 H 1.48499 * 109.47579 * 29.99733 * 3 2 1 6 6 H 1.48504 * 109.47061 * 149.99793 * 3 2 1 7 7 C 1.38810 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00394 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99717 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.91011 * 336.23795 * 10 9 7 12 12 C 1.53772 * 113.61750 * 107.50142 * 10 9 7 13 13 C 1.53776 * 87.08786 * 139.97591 * 12 10 9 14 14 H 1.08999 * 113.69365 * 89.12191 * 13 12 10 15 15 C 1.53001 * 113.62061 * 220.02310 * 13 12 10 16 16 N 1.46506 * 109.46443 * 272.49395 * 15 13 12 17 17 C 1.34781 * 119.99297 * 179.97438 * 16 15 13 18 18 O 1.21570 * 120.00475 * 0.02562 * 17 16 15 19 19 C 1.47701 * 119.99505 * 179.97438 * 17 16 15 20 20 C 1.41556 * 126.43532 * 180.02562 * 19 17 16 21 21 C 1.35324 * 105.55867 * 180.02562 * 20 19 17 22 22 N 1.35916 * 107.11525 * 359.97438 * 21 20 19 23 23 C 1.39904 * 124.96441 * 179.97438 * 22 21 20 24 24 C 1.39327 * 120.86258 * 359.97438 * 23 22 21 25 25 C 1.38011 * 119.08442 * 180.02562 * 24 23 22 26 26 N 1.31934 * 120.83201 * 0.02562 * 25 24 23 27 27 C 1.31930 * 121.88780 * 0.02562 * 26 25 24 28 28 C 1.38015 * 120.83305 * 359.97321 * 27 26 25 29 29 N 1.28479 * 110.06692 * 0.23346 * 22 21 20 30 30 C 1.53783 * 87.07869 * 334.56784 * 13 12 10 31 31 H 0.97007 * 119.99800 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99827 * 359.97438 * 9 7 2 33 33 H 1.09010 * 113.61932 * 25.42604 * 12 10 9 34 34 H 1.09000 * 113.61451 * 254.52560 * 12 10 9 35 35 H 1.08997 * 109.47178 * 152.49486 * 15 13 12 36 36 H 1.09003 * 109.47118 * 32.49096 * 15 13 12 37 37 H 0.96993 * 120.00331 * 0.02562 * 16 15 13 38 38 H 1.07995 * 127.22408 * 0.04400 * 20 19 17 39 39 H 1.08004 * 126.44780 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.45198 * 0.03286 * 24 23 22 41 41 H 1.08007 * 119.58356 * 180.29231 * 25 24 23 42 42 H 1.08000 * 119.58221 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.46424 * 180.02562 * 28 27 26 44 44 H 1.09004 * 113.61560 * 139.98027 * 30 13 12 45 45 H 1.09004 * 113.61027 * 270.88299 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0659 -3.5648 -0.4040 12 6 1.9991 -4.4021 1.3442 13 6 1.8478 -5.6976 0.5296 14 1 2.7976 -6.1647 0.2692 15 6 0.8447 -6.6851 1.1291 16 7 1.5261 -7.5432 2.1017 17 6 0.8357 -8.4949 2.7606 18 8 -0.3521 -8.6418 2.5475 19 6 1.5227 -9.3603 3.7407 20 6 0.9345 -10.3967 4.5049 21 6 1.9371 -10.9069 5.2570 22 7 3.0618 -10.2073 4.9521 23 6 4.3218 -10.4283 5.5186 24 6 4.5109 -11.4242 6.4745 25 6 5.7694 -11.6101 7.0095 26 7 6.7845 -10.8592 6.6270 27 6 6.6455 -9.9059 5.7257 28 6 5.4195 -9.6567 5.1429 29 7 2.7975 -9.3098 4.0715 30 6 1.2599 -4.8288 -0.5949 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.1208 -4.1569 1.9416 34 1 2.9272 -4.3502 1.9134 35 1 0.4219 -7.3006 0.3350 36 1 0.0461 -6.1349 1.6266 37 1 2.4737 -7.4258 2.2720 38 1 -0.0977 -10.7139 4.4904 39 1 1.8587 -11.7181 5.9657 40 1 3.6841 -12.0421 6.7921 41 1 5.9262 -12.3829 7.7476 42 1 7.5019 -9.3130 5.4403 43 1 5.3125 -8.8751 4.4054 44 1 1.5914 -5.1212 -1.5913 45 1 0.1796 -4.7002 -0.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086145201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 121.862277 kcal Electronic energy + Delta-G solvation = -27415.305127 eV Core-core repulsion = 23435.969879 eV Total energy + Delta-G solvation = -3979.335248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.44133 -40.62923 -39.62247 -38.38400 -34.94464 -34.73788 -33.29351 -32.29564 -31.16612 -30.95514 -30.16860 -27.63381 -25.28202 -25.06260 -24.51342 -23.83229 -22.66103 -21.74736 -21.03119 -20.33271 -19.28480 -19.01749 -17.59046 -17.01442 -16.74867 -16.68341 -16.53227 -16.02114 -15.57002 -15.29093 -14.86767 -14.65027 -14.47496 -14.32873 -14.24556 -14.05028 -13.60426 -13.40564 -13.28887 -12.90501 -12.43319 -11.91347 -11.81224 -11.45838 -11.40224 -11.29363 -11.22184 -10.84464 -10.57540 -10.39770 -10.26229 -10.15137 -10.00575 -9.92952 -9.81883 -9.81292 -9.49678 -9.26421 -9.00913 -8.86131 -6.95526 -5.77686 -3.06450 0.00300 0.40102 1.40834 1.68506 1.75122 3.03124 3.11871 3.22073 3.43006 3.48106 3.49949 3.64563 3.78715 3.99943 4.22521 4.27525 4.43183 4.58764 4.64448 4.82182 4.98097 4.99329 5.01002 5.08804 5.13300 5.23991 5.25706 5.35513 5.47337 5.52167 5.80306 5.82579 5.85112 5.89689 5.94599 6.09928 6.23950 6.27522 6.31904 6.37231 6.44135 6.61055 6.83752 7.12421 7.19537 7.27912 7.49884 7.69590 8.06746 8.40904 9.51911 10.10423 10.44591 11.44649 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.001910 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.249112 B =14654.628219 C =16205.079784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.708 5.708 17 C 0.599 3.401 18 O -0.530 6.530 19 C 0.009 3.991 20 C -0.164 4.164 21 C -0.014 4.014 22 N -0.243 5.243 23 C 0.187 3.813 24 C -0.186 4.186 25 C 0.126 3.874 26 N -0.487 5.487 27 C 0.126 3.874 28 C -0.165 4.165 29 N -0.256 5.256 30 C -0.142 4.142 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.406 0.594 38 H 0.173 0.827 39 H 0.189 0.811 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.155 0.845 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 -28.611 13.183 32.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.359 5.359 17 C 0.382 3.618 18 O -0.404 6.404 19 C -0.154 4.154 20 C -0.191 4.191 21 C -0.153 4.153 22 N -0.025 5.025 23 C 0.087 3.913 24 C -0.208 4.208 25 C -0.031 4.031 26 N -0.197 5.197 27 C -0.031 4.031 28 C -0.187 4.187 29 N -0.089 5.089 30 C -0.181 4.181 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.190 0.810 39 H 0.206 0.794 40 H 0.164 0.836 41 H 0.186 0.814 42 H 0.187 0.813 43 H 0.172 0.828 44 H 0.080 0.920 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.746 -28.077 13.159 32.817 hybrid contribution -1.064 0.623 -0.003 1.233 sum 9.683 -27.454 13.156 31.947 Atomic orbital electron populations 1.69663 1.05122 1.25721 1.57478 1.24774 0.95537 0.97795 1.02894 0.86188 0.78653 0.83826 0.77502 1.21706 1.21777 1.20759 1.19303 0.91061 0.84255 1.42865 0.91109 1.42413 1.05769 0.99877 1.86990 1.21515 0.95308 0.85042 0.92766 0.90674 1.23954 1.01410 0.94878 0.99961 1.22645 0.98394 0.94377 0.99259 0.89314 1.21537 0.95411 0.91531 0.90703 1.45921 1.13643 1.34381 1.41947 1.16816 0.85816 0.79607 0.79564 1.90822 1.14249 1.70160 1.65202 1.22275 0.90087 1.00806 1.02208 1.21925 1.01045 0.97830 0.98279 1.23093 0.85254 1.02002 1.04927 1.42647 1.06924 1.24088 1.28870 1.17927 0.82414 0.96554 0.94360 1.21919 1.00890 0.99401 0.98636 1.22734 0.86879 0.96694 0.96815 1.67738 1.33781 1.05462 1.12706 1.22852 0.96215 0.93351 0.90650 1.22087 0.92120 1.01483 1.03008 1.73539 1.17739 1.11055 1.06531 1.23452 1.01074 0.96955 0.96662 0.93463 0.78050 0.90312 0.92774 0.91371 0.90834 0.75874 0.80999 0.79433 0.83609 0.81431 0.81303 0.82763 0.91959 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.80 5.40 -52.64 -0.28 -18.08 16 10 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 11 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 12 C -0.16 -2.68 7.43 -25.93 -0.19 -2.87 16 13 C -0.13 -1.72 3.75 -89.81 -0.34 -2.05 16 14 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 16 N -0.71 -8.79 5.55 -61.29 -0.34 -9.13 16 17 C 0.60 8.25 7.82 -12.39 -0.10 8.15 16 18 O -0.53 -8.86 16.92 5.30 0.09 -8.77 16 19 C 0.01 0.11 7.13 -82.75 -0.59 -0.48 16 20 C -0.16 -1.53 10.80 -39.36 -0.42 -1.95 16 21 C -0.01 -0.10 10.82 -16.78 -0.18 -0.28 16 22 N -0.24 -2.15 3.51 -10.37 -0.04 -2.19 16 23 C 0.19 1.38 6.70 -83.36 -0.56 0.82 16 24 C -0.19 -0.91 9.50 -39.26 -0.37 -1.28 16 25 C 0.13 0.63 11.17 -17.59 -0.20 0.43 16 26 N -0.49 -3.46 10.36 -13.32 -0.14 -3.60 16 27 C 0.13 0.78 11.17 -17.59 -0.20 0.59 16 28 C -0.17 -1.16 9.67 -39.26 -0.38 -1.54 16 29 N -0.26 -2.78 10.94 33.43 0.37 -2.41 16 30 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.39 10.25 7.92 -40.82 -0.32 9.93 16 33 H 0.08 1.45 7.90 -51.92 -0.41 1.04 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 37 H 0.41 4.41 8.19 -40.82 -0.33 4.07 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.19 0.53 7.04 -52.48 -0.37 0.16 16 40 H 0.15 0.30 6.78 -52.48 -0.36 -0.06 16 41 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.15 1.06 7.74 -52.49 -0.41 0.65 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -34.90 387.92 -9.04 -43.94 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.95 Total: 10.22 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -4.29 Total: -5.68 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.29 Total: -62.92 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.90 -9.04 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086145201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.802 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds