Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.85438 * 334.66750 * 10 9 7 12 12 C 1.53785 * 113.61192 * 105.86506 * 10 9 7 13 13 C 1.53958 * 87.01874 * 139.94818 * 12 10 9 14 14 H 1.09008 * 113.53779 * 89.18998 * 13 12 10 15 15 C 1.52995 * 113.74351 * 220.05392 * 13 12 10 16 16 N 1.46506 * 109.47502 * 272.59992 * 15 13 12 17 17 C 1.34774 * 120.00215 * 180.02562 * 16 15 13 18 18 O 1.21552 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.47854 * 119.99862 * 180.02562 * 17 16 15 20 20 C 1.39618 * 120.11523 * 359.97438 * 19 17 16 21 21 C 1.37978 * 119.98941 * 179.97438 * 20 19 17 22 22 C 1.38263 * 120.21562 * 0.02562 * 21 20 19 23 23 C 1.38917 * 120.22826 * 359.97438 * 22 21 20 24 24 N 1.40223 * 119.99570 * 180.02562 * 23 22 21 25 25 C 1.34722 * 126.84002 * 4.71949 * 24 23 22 26 26 N 1.30848 * 108.03133 * 179.86463 * 25 24 23 27 27 C 1.33256 * 109.84370 * 0.40272 * 26 25 24 28 28 N 1.30748 * 108.99899 * 359.74740 * 27 26 25 29 29 C 1.38597 * 120.00826 * 359.79507 * 23 22 21 30 30 C 1.53779 * 87.11375 * 334.63919 * 13 12 10 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.09003 * 113.61587 * 254.52818 * 12 10 9 34 34 H 1.08999 * 113.61375 * 25.42858 * 12 10 9 35 35 H 1.08999 * 109.47466 * 32.59722 * 15 13 12 36 36 H 1.09002 * 109.47305 * 152.60246 * 15 13 12 37 37 H 0.97003 * 119.99639 * 359.97438 * 16 15 13 38 38 H 1.08007 * 120.00513 * 359.95986 * 20 19 17 39 39 H 1.08003 * 119.89100 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.88391 * 180.02562 * 22 21 20 41 41 H 1.08005 * 125.98555 * 359.97438 * 25 24 23 42 42 H 1.08006 * 125.50012 * 179.74600 * 27 26 25 43 43 H 1.08000 * 120.10501 * 180.23182 * 29 23 22 44 44 H 1.09001 * 113.60927 * 270.81521 * 30 13 12 45 45 H 1.08998 * 113.61852 * 139.91019 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0561 -3.5693 -0.4292 12 6 2.0326 -4.3827 1.3560 13 6 1.8607 -5.6902 0.5615 14 1 2.8052 -6.1597 0.2861 15 6 0.8725 -6.6710 1.1957 16 7 1.5762 -7.5159 2.1639 17 6 0.9021 -8.4605 2.8493 18 8 -0.2898 -8.6111 2.6646 19 6 1.6122 -9.3127 3.8268 20 6 2.9811 -9.1414 4.0413 21 6 3.6411 -9.9378 4.9545 22 6 2.9514 -10.9070 5.6591 23 6 1.5892 -11.0852 5.4528 24 7 0.8944 -12.0693 6.1704 25 6 1.3859 -12.8534 7.1495 26 7 0.4224 -13.6357 7.5640 27 6 -0.6897 -13.3889 6.8727 28 7 -0.4510 -12.4380 6.0077 29 6 0.9160 -10.2873 4.5412 30 6 1.2470 -4.8365 -0.5607 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.9745 -4.3227 1.9013 34 1 1.1693 -4.1288 1.9711 35 1 0.0844 -6.1153 1.7038 36 1 0.4329 -7.2971 0.4192 37 1 2.5274 -7.3959 2.3111 38 1 3.5234 -8.3857 3.4923 39 1 4.7002 -9.8041 5.1188 40 1 3.4732 -11.5271 6.3729 41 1 2.3976 -12.8378 7.5274 42 1 -1.6356 -13.8931 7.0054 43 1 -0.1438 -10.4220 4.3824 44 1 0.1685 -4.7069 -0.4704 45 1 1.5554 -5.1422 -1.5604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086193592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 122.376927 kcal Electronic energy + Delta-G solvation = -27270.130089 eV Core-core repulsion = 23290.817158 eV Total energy + Delta-G solvation = -3979.312932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.81387 -40.58266 -39.12952 -38.31902 -35.01745 -34.59161 -33.32616 -32.23706 -31.49686 -30.47490 -29.94331 -27.49817 -25.14944 -24.92404 -24.38694 -23.67273 -22.51096 -21.75457 -21.11647 -20.69655 -19.37755 -18.81437 -17.21961 -17.05940 -16.83465 -16.41663 -16.32290 -15.79007 -15.52252 -15.14930 -14.86764 -14.73168 -14.62143 -14.31697 -14.01240 -13.69706 -13.58931 -13.17054 -12.95646 -12.90950 -12.43609 -11.98011 -11.93004 -11.86312 -11.44309 -11.37110 -11.26920 -10.85045 -10.62914 -10.58521 -10.39691 -10.36876 -10.20793 -10.01797 -9.86256 -9.68170 -9.53492 -9.14722 -8.99629 -8.89081 -6.99034 -5.80377 -3.09596 0.01167 0.42761 1.38570 1.62033 2.38792 2.52575 2.90010 3.34655 3.41247 3.45726 3.47067 3.70180 3.85590 4.12302 4.24540 4.33957 4.45679 4.53184 4.56051 4.76882 4.87840 4.90772 4.96829 5.17135 5.22810 5.42678 5.44214 5.46472 5.60542 5.67168 5.76399 5.78443 5.78990 5.85924 5.88664 5.97306 6.05828 6.16754 6.25923 6.31090 6.37527 6.41965 6.54586 6.77809 7.07406 7.29508 7.46914 7.66028 7.98722 8.38076 9.49036 10.07199 10.41215 11.41817 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.001610 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.729766 B =17391.949483 C =17596.243948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.553 3.447 18 O -0.531 6.531 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.097 4.097 22 C -0.111 4.111 23 C 0.139 3.861 24 N -0.330 5.330 25 C 0.260 3.740 26 N -0.537 5.537 27 C 0.207 3.793 28 N -0.308 5.308 29 C -0.054 4.054 30 C -0.141 4.141 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.224 0.776 42 H 0.225 0.775 43 H 0.153 0.847 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 -27.495 12.334 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.368 5.368 17 C 0.339 3.661 18 O -0.408 6.408 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.116 4.116 22 C -0.132 4.132 23 C 0.047 3.953 24 N -0.114 5.114 25 C -0.035 4.035 26 N -0.263 5.263 27 C -0.096 4.096 28 N -0.133 5.133 29 C -0.074 4.074 30 C -0.181 4.181 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.240 0.760 42 H 0.241 0.759 43 H 0.170 0.830 44 H 0.100 0.900 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.534 -27.348 11.923 30.771 hybrid contribution 0.818 0.978 0.224 1.295 sum 8.352 -26.370 12.148 30.211 Atomic orbital electron populations 1.69652 1.05140 1.25894 1.57264 1.24772 0.95521 0.97797 1.02759 0.86263 0.78536 0.83509 0.77831 1.21670 1.21258 1.21229 1.19251 0.91033 0.84259 1.43200 0.91151 1.42403 1.05763 0.99859 1.87054 1.21516 0.95246 0.85093 0.92801 0.90743 1.23994 1.01318 0.94741 1.00179 1.22682 0.98406 0.94448 0.99170 0.89345 1.21516 0.95134 0.91802 0.90714 1.45957 1.12919 1.35741 1.42144 1.18109 0.86817 0.80376 0.80805 1.90819 1.14607 1.69423 1.65965 1.19917 0.94030 0.98054 0.98973 1.21501 0.93134 0.98763 0.97325 1.20955 1.00634 0.94518 0.95497 1.21003 0.91046 0.99977 1.01220 1.17414 0.90801 0.91009 0.96105 1.47753 1.08458 1.27618 1.27596 1.26221 1.00815 0.88302 0.88176 1.70642 0.99754 1.26724 1.29153 1.26240 0.98837 0.93995 0.90500 1.78260 0.91904 1.18493 1.24648 1.21025 1.01727 0.92120 0.92572 1.23428 1.00982 0.96996 0.96702 0.93375 0.78049 0.92755 0.90296 0.90875 0.91421 0.76490 0.84489 0.83782 0.84496 0.76022 0.75919 0.82960 0.90035 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.47 5.41 -52.64 -0.28 -17.76 16 10 C 0.17 3.09 4.47 -67.12 -0.30 2.79 16 11 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 12 C -0.16 -2.53 7.45 -25.82 -0.19 -2.72 16 13 C -0.13 -1.59 3.75 -89.72 -0.34 -1.92 16 14 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 15 C 0.13 1.63 5.52 -4.04 -0.02 1.60 16 16 N -0.72 -7.52 5.51 -61.25 -0.34 -7.85 16 17 C 0.55 6.86 7.77 -12.33 -0.10 6.76 16 18 O -0.53 -8.80 16.35 5.32 0.09 -8.71 16 19 C -0.11 -1.02 5.87 -104.99 -0.62 -1.63 16 20 C -0.09 -0.54 9.54 -39.16 -0.37 -0.91 16 21 C -0.10 -0.43 10.02 -39.67 -0.40 -0.82 16 22 C -0.11 -0.55 9.47 -39.32 -0.37 -0.92 16 23 C 0.14 1.15 6.68 -83.63 -0.56 0.60 16 24 N -0.33 -2.96 3.82 -11.84 -0.05 -3.00 16 25 C 0.26 1.77 11.97 -90.38 -1.08 0.68 16 26 N -0.54 -4.71 11.19 -15.75 -0.18 -4.89 16 27 C 0.21 1.77 13.03 -91.77 -1.20 0.57 16 28 N -0.31 -3.29 12.06 29.30 0.35 -2.94 16 29 C -0.05 -0.56 9.23 -38.99 -0.36 -0.92 16 30 C -0.14 -2.15 7.39 -25.92 -0.19 -2.34 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.39 10.11 7.91 -40.82 -0.32 9.78 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 35 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 3.00 6.50 -40.82 -0.27 2.73 16 38 H 0.14 0.53 6.40 -52.48 -0.34 0.19 16 39 H 0.14 0.21 8.06 -52.48 -0.42 -0.21 16 40 H 0.14 0.22 6.81 -52.49 -0.36 -0.14 16 41 H 0.22 0.40 7.12 -52.48 -0.37 0.03 16 42 H 0.22 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.15 1.92 7.34 -52.49 -0.39 1.53 16 44 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -36.23 384.74 -11.03 -47.25 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.78 Total: 8.77 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -6.34 Total: -6.50 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.23 Total: -63.66 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.23 -11.03 -47.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086193592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.630 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds