Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85121 * 336.19098 * 10 9 7 12 12 C 1.53778 * 113.61936 * 107.49927 * 10 9 7 13 13 C 1.53779 * 87.08439 * 139.97912 * 12 10 9 14 14 H 1.09003 * 113.61331 * 89.11930 * 13 12 10 15 15 C 1.53000 * 113.68998 * 220.00632 * 13 12 10 16 16 N 1.46496 * 109.47261 * 272.53731 * 15 13 12 17 17 C 1.34781 * 119.99848 * 180.02562 * 16 15 13 18 18 O 1.21571 * 119.99917 * 359.97438 * 17 16 15 19 19 C 1.47669 * 119.99899 * 180.02562 * 17 16 15 20 20 C 1.39700 * 120.08352 * 359.71124 * 19 17 16 21 21 C 1.37729 * 119.91954 * 179.75189 * 20 19 17 22 22 C 1.39023 * 120.08283 * 0.53136 * 21 20 19 23 23 N 1.39929 * 119.92320 * 179.74761 * 22 21 20 24 24 C 1.36347 * 127.11671 * 179.66317 * 23 22 21 25 25 N 1.30510 * 107.19529 * 179.83358 * 24 23 22 26 26 N 1.28542 * 109.91735 * 0.44308 * 25 24 23 27 27 C 1.30507 * 109.91839 * 359.71800 * 26 25 24 28 28 C 1.39030 * 120.15853 * 359.72353 * 22 21 20 29 29 C 1.37726 * 120.07990 * 0.02562 * 28 22 21 30 30 C 1.53778 * 87.07813 * 334.56895 * 13 12 10 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09000 * 113.61521 * 254.53499 * 12 10 9 34 34 H 1.09010 * 113.61315 * 25.42877 * 12 10 9 35 35 H 1.09004 * 109.46971 * 32.54257 * 15 13 12 36 36 H 1.09004 * 109.46838 * 152.53413 * 15 13 12 37 37 H 0.96993 * 120.00419 * 0.02562 * 16 15 13 38 38 H 1.07998 * 120.03760 * 359.97438 * 20 19 17 39 39 H 1.08007 * 119.95713 * 180.25902 * 21 20 19 40 40 H 1.08003 * 126.40193 * 359.97438 * 24 23 22 41 41 H 1.07993 * 126.40013 * 179.97438 * 27 26 25 42 42 H 1.07996 * 119.95763 * 179.97438 * 28 22 21 43 43 H 1.07998 * 120.03998 * 179.97438 * 29 28 22 44 44 H 1.09004 * 113.61556 * 270.87687 * 30 13 12 45 45 H 1.09008 * 113.68576 * 139.99227 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0658 -3.5637 -0.4063 12 6 1.9981 -4.4028 1.3418 13 6 1.8475 -5.6979 0.5263 14 1 2.7982 -6.1637 0.2671 15 6 0.8445 -6.6871 1.1234 16 7 1.5251 -7.5453 2.0962 17 6 0.8350 -8.4991 2.7524 18 8 -0.3524 -8.6469 2.5372 19 6 1.5209 -9.3638 3.7334 20 6 2.8863 -9.1987 3.9783 21 6 3.5216 -10.0037 4.8977 22 6 2.8082 -10.9869 5.5737 23 7 3.4581 -11.8064 6.5033 24 6 2.9044 -12.8048 7.2488 25 7 3.8578 -13.3145 7.9799 26 7 4.9627 -12.6991 7.7499 27 6 4.7749 -11.7676 6.8552 28 6 1.4503 -11.1577 5.3287 29 6 0.8073 -10.3530 4.4145 30 6 1.2605 -4.8285 -0.5981 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.9257 -4.3510 1.9117 34 1 1.1193 -4.1578 1.9385 35 1 0.0445 -6.1381 1.6201 36 1 0.4235 -7.3022 0.3280 37 1 2.4724 -7.4271 2.2681 38 1 3.4423 -8.4384 3.4499 39 1 4.5764 -9.8738 5.0906 40 1 1.8707 -13.1172 7.2350 41 1 5.5225 -11.0922 6.4667 42 1 0.8993 -11.9228 5.8554 43 1 -0.2474 -10.4865 4.2243 44 1 0.1800 -4.7000 -0.5319 45 1 1.5918 -5.1196 -1.5950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086225487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = 111.639319 kcal Electronic energy + Delta-G solvation = -27218.237779 eV Core-core repulsion = 23238.459230 eV Total energy + Delta-G solvation = -3979.778549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.83745 -40.76578 -39.35141 -38.51664 -35.51322 -35.05424 -33.72428 -32.20879 -31.09755 -30.93757 -30.00289 -27.48338 -25.31038 -25.19240 -24.34868 -23.68759 -22.76717 -21.81807 -21.34146 -20.93584 -19.51152 -19.26912 -18.15132 -17.31930 -16.78760 -16.62600 -16.40735 -15.76313 -15.63565 -15.42804 -15.09176 -14.88909 -14.78221 -14.34271 -14.10922 -13.94922 -13.76029 -13.49543 -13.41149 -13.24439 -12.15916 -12.11109 -12.03193 -11.91778 -11.81516 -11.64562 -11.09145 -11.06384 -10.81318 -10.54955 -10.43625 -10.14641 -10.10961 -10.06156 -9.94340 -9.91126 -9.40577 -9.19188 -9.13825 -8.93694 -7.10337 -6.16863 -3.17308 -0.24828 0.49783 1.28286 1.67309 2.26967 2.38066 2.80263 3.19830 3.47393 3.50599 3.66332 3.68456 3.79649 3.92830 4.05128 4.16784 4.32766 4.45457 4.56102 4.60982 4.76044 4.78450 4.83808 4.91701 5.03947 5.10335 5.30643 5.32778 5.33946 5.40824 5.52928 5.60526 5.64419 5.68255 5.77891 5.81405 5.84058 6.03985 6.11976 6.16611 6.24106 6.29362 6.41809 6.62878 6.93334 7.16896 7.74184 7.85783 8.03475 8.68786 9.15386 10.01777 10.16495 11.31116 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.001624 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.506984 B =17241.105517 C =18094.299337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.338 4.338 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.077 0.923 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.717 5.717 17 C 0.553 3.447 18 O -0.534 6.534 19 C -0.130 4.130 20 C -0.057 4.057 21 C -0.133 4.133 22 C 0.150 3.850 23 N -0.432 5.432 24 C 0.162 3.838 25 N -0.289 5.289 26 N -0.289 5.289 27 C 0.162 3.838 28 C -0.135 4.135 29 C -0.032 4.032 30 C -0.144 4.144 31 H 0.255 0.745 32 H 0.368 0.632 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.224 0.776 41 H 0.224 0.776 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.079 0.921 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -25.434 9.296 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.469 4.469 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.059 3.941 11 H 0.095 0.905 12 C -0.202 4.202 13 C -0.146 4.146 14 H 0.108 0.892 15 C 0.009 3.991 16 N -0.368 5.368 17 C 0.340 3.660 18 O -0.412 6.412 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.153 4.153 22 C 0.057 3.943 23 N -0.120 5.120 24 C -0.124 4.124 25 N -0.126 5.126 26 N -0.126 5.126 27 C -0.124 4.124 28 C -0.154 4.154 29 C -0.051 4.051 30 C -0.183 4.183 31 H 0.066 0.934 32 H 0.202 0.798 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.241 0.759 41 H 0.241 0.759 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.722 -24.731 10.175 27.574 hybrid contribution -0.229 -0.832 -0.804 1.179 sum 6.493 -25.563 9.371 27.990 Atomic orbital electron populations 1.70892 1.06064 1.28474 1.53210 1.25810 0.97042 1.01116 1.00212 0.83244 0.74246 0.75592 0.75863 1.20989 1.22246 1.22206 1.20094 0.92064 0.85909 1.48831 0.91674 1.42412 1.04784 1.00877 1.88243 1.21452 0.95337 0.84563 0.92732 0.90508 1.23953 1.01387 0.94912 0.99979 1.22640 0.98416 0.94354 0.99215 0.89236 1.21505 0.95363 0.91523 0.90753 1.45975 1.13340 1.34885 1.42630 1.18107 0.86680 0.80424 0.80821 1.90813 1.14865 1.70139 1.65353 1.20178 0.94179 0.99009 0.99992 1.21236 0.93329 0.97561 0.95535 1.20785 1.00757 0.95757 0.98032 1.17929 0.92471 0.92497 0.91451 1.44330 1.09750 1.26959 1.30916 1.26866 1.02412 0.89863 0.93255 1.74283 0.95593 1.22202 1.20542 1.74282 1.18444 1.06245 1.13621 1.26869 0.85069 1.02027 0.98422 1.20848 0.91765 1.02070 1.00765 1.21194 1.01056 0.91180 0.91661 1.23465 1.00944 0.97083 0.96856 0.93360 0.79802 0.92648 0.90456 0.90935 0.91357 0.76521 0.84079 0.84144 0.75947 0.75930 0.84139 0.83136 0.90229 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.71 13.70 55.49 0.76 -27.95 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.36 29.92 -169.99 -5.09 20.28 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.34 -9.27 9.97 -15.06 -0.15 -9.42 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -17.49 5.40 -52.65 -0.28 -17.77 16 10 C 0.17 3.15 4.48 -67.13 -0.30 2.85 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.16 -2.45 7.43 -25.92 -0.19 -2.64 16 13 C -0.13 -1.49 3.75 -89.81 -0.34 -1.83 16 14 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.13 1.49 5.51 -4.04 -0.02 1.47 16 16 N -0.72 -6.64 5.51 -61.31 -0.34 -6.97 16 17 C 0.55 5.84 7.77 -12.41 -0.10 5.74 16 18 O -0.53 -7.70 16.34 5.30 0.09 -7.61 16 19 C -0.13 -0.97 5.87 -104.95 -0.62 -1.58 16 20 C -0.06 -0.28 9.53 -39.22 -0.37 -0.66 16 21 C -0.13 -0.57 9.46 -39.48 -0.37 -0.94 16 22 C 0.15 0.78 6.65 -83.58 -0.56 0.23 16 23 N -0.43 -2.59 2.99 -63.17 -0.19 -2.78 16 24 C 0.16 1.05 12.06 -89.16 -1.08 -0.03 16 25 N -0.29 -2.93 12.20 29.85 0.36 -2.57 16 26 N -0.29 -2.93 12.20 29.85 0.36 -2.57 16 27 C 0.16 1.05 12.06 -89.16 -1.08 -0.03 16 28 C -0.13 -0.65 9.46 -39.47 -0.37 -1.02 16 29 C -0.03 -0.21 9.58 -39.22 -0.38 -0.58 16 30 C -0.14 -2.11 7.39 -25.92 -0.19 -2.30 16 31 H 0.26 7.65 6.77 -40.82 -0.28 7.37 16 32 H 0.37 9.23 6.76 -40.82 -0.28 8.95 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.31 7.90 -51.92 -0.41 0.90 16 35 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.58 6.50 -40.82 -0.27 2.32 16 38 H 0.14 0.40 6.39 -52.49 -0.34 0.06 16 39 H 0.14 0.25 6.84 -52.48 -0.36 -0.11 16 40 H 0.22 0.51 7.17 -52.48 -0.38 0.13 16 41 H 0.22 0.50 7.17 -52.49 -0.38 0.12 16 42 H 0.14 0.33 6.84 -52.49 -0.36 -0.03 16 43 H 0.15 0.99 7.64 -52.49 -0.40 0.58 16 44 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 45 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -37.10 380.47 -10.38 -47.47 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.58 Total: 6.83 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -6.21 Total: -12.09 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.68 Total: -60.61 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.09 Total: 20.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.10 -10.38 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086225487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.111 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds