Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85121 * 336.19098 * 10 9 7 12 12 C 1.53778 * 113.61936 * 107.49927 * 10 9 7 13 13 C 1.53779 * 87.08439 * 139.97912 * 12 10 9 14 14 H 1.09003 * 113.61331 * 89.11930 * 13 12 10 15 15 C 1.53000 * 113.68998 * 220.00632 * 13 12 10 16 16 N 1.46496 * 109.47261 * 272.53731 * 15 13 12 17 17 C 1.34781 * 119.99848 * 180.02562 * 16 15 13 18 18 O 1.21571 * 119.99917 * 359.97438 * 17 16 15 19 19 C 1.47669 * 119.99899 * 180.02562 * 17 16 15 20 20 C 1.39700 * 120.08352 * 359.71124 * 19 17 16 21 21 C 1.37729 * 119.91954 * 179.75189 * 20 19 17 22 22 C 1.39023 * 120.08283 * 0.53136 * 21 20 19 23 23 N 1.39929 * 119.92320 * 179.74761 * 22 21 20 24 24 C 1.36347 * 127.11671 * 179.66317 * 23 22 21 25 25 N 1.30510 * 107.19529 * 179.83358 * 24 23 22 26 26 N 1.28542 * 109.91735 * 0.44308 * 25 24 23 27 27 C 1.30507 * 109.91839 * 359.71800 * 26 25 24 28 28 C 1.39030 * 120.15853 * 359.72353 * 22 21 20 29 29 C 1.37726 * 120.07990 * 0.02562 * 28 22 21 30 30 C 1.53778 * 87.07813 * 334.56895 * 13 12 10 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09000 * 113.61521 * 254.53499 * 12 10 9 34 34 H 1.09010 * 113.61315 * 25.42877 * 12 10 9 35 35 H 1.09004 * 109.46971 * 32.54257 * 15 13 12 36 36 H 1.09004 * 109.46838 * 152.53413 * 15 13 12 37 37 H 0.96993 * 120.00419 * 0.02562 * 16 15 13 38 38 H 1.07998 * 120.03760 * 359.97438 * 20 19 17 39 39 H 1.08007 * 119.95713 * 180.25902 * 21 20 19 40 40 H 1.08003 * 126.40193 * 359.97438 * 24 23 22 41 41 H 1.07993 * 126.40013 * 179.97438 * 27 26 25 42 42 H 1.07996 * 119.95763 * 179.97438 * 28 22 21 43 43 H 1.07998 * 120.03998 * 179.97438 * 29 28 22 44 44 H 1.09004 * 113.61556 * 270.87687 * 30 13 12 45 45 H 1.09008 * 113.68576 * 139.99227 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0658 -3.5637 -0.4063 12 6 1.9981 -4.4028 1.3418 13 6 1.8475 -5.6979 0.5263 14 1 2.7982 -6.1637 0.2671 15 6 0.8445 -6.6871 1.1234 16 7 1.5251 -7.5453 2.0962 17 6 0.8350 -8.4991 2.7524 18 8 -0.3524 -8.6469 2.5372 19 6 1.5209 -9.3638 3.7334 20 6 2.8863 -9.1987 3.9783 21 6 3.5216 -10.0037 4.8977 22 6 2.8082 -10.9869 5.5737 23 7 3.4581 -11.8064 6.5033 24 6 2.9044 -12.8048 7.2488 25 7 3.8578 -13.3145 7.9799 26 7 4.9627 -12.6991 7.7499 27 6 4.7749 -11.7676 6.8552 28 6 1.4503 -11.1577 5.3287 29 6 0.8073 -10.3530 4.4145 30 6 1.2605 -4.8285 -0.5981 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.9257 -4.3510 1.9117 34 1 1.1193 -4.1578 1.9385 35 1 0.0445 -6.1381 1.6201 36 1 0.4235 -7.3022 0.3280 37 1 2.4724 -7.4271 2.2681 38 1 3.4423 -8.4384 3.4499 39 1 4.5764 -9.8738 5.0906 40 1 1.8707 -13.1172 7.2350 41 1 5.5225 -11.0922 6.4667 42 1 0.8993 -11.9228 5.8554 43 1 -0.2474 -10.4865 4.2243 44 1 0.1800 -4.7000 -0.5319 45 1 1.5918 -5.1196 -1.5950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086225487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = 88.805538 kcal Electronic energy + Delta-G solvation = -27219.227926 eV Core-core repulsion = 23238.459230 eV Total energy + Delta-G solvation = -3980.768696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.32761 -41.42710 -40.24378 -39.49287 -36.34440 -36.03333 -35.27989 -32.65114 -32.10343 -31.52472 -31.22761 -28.57189 -26.53644 -25.99963 -25.44439 -24.76018 -23.39779 -22.68680 -22.15483 -21.65997 -20.54625 -19.88297 -19.41124 -18.75301 -17.41669 -17.28067 -16.86575 -16.76248 -16.59849 -16.28760 -16.13443 -15.71553 -15.57677 -15.29942 -15.16868 -14.96046 -14.63366 -14.55668 -14.12283 -13.99417 -13.44936 -13.32333 -13.13376 -12.69607 -12.62919 -12.53929 -12.31824 -12.28608 -12.08986 -11.83816 -11.67162 -11.60006 -11.40457 -11.19357 -10.95307 -10.81024 -10.65086 -10.26253 -10.22182 -9.67557 -9.08343 -8.38729 -5.32402 -0.70320 0.14898 0.81323 1.25817 1.58863 1.68763 1.73940 1.77003 1.84877 2.04788 2.68037 2.72745 3.29505 3.38456 3.45769 3.55812 3.58501 3.64082 3.68103 3.76833 3.82563 3.95250 4.07614 4.11249 4.17315 4.25778 4.33231 4.44263 4.49073 4.49966 4.70634 4.79254 4.89008 4.89997 4.91452 4.94680 4.99202 5.13460 5.15005 5.22017 5.26759 5.34966 5.43391 5.60054 5.66078 5.90807 6.45710 6.49195 7.10369 7.11470 7.52411 8.00890 8.13612 9.12921 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.001624 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.506984 B =17241.105517 C =18094.299337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.109 4.109 3 Si 1.128 2.872 4 H -0.296 1.296 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.333 4.333 8 H 0.071 0.929 9 N -0.743 5.743 10 C 0.145 3.855 11 H 0.079 0.921 12 C -0.152 4.152 13 C -0.092 4.092 14 H 0.126 0.874 15 C 0.138 3.862 16 N -0.706 5.706 17 C 0.551 3.449 18 O -0.583 6.583 19 C -0.148 4.148 20 C -0.050 4.050 21 C -0.128 4.128 22 C 0.147 3.853 23 N -0.433 5.433 24 C 0.170 3.830 25 N -0.337 5.337 26 N -0.338 5.338 27 C 0.173 3.827 28 C -0.131 4.131 29 C -0.043 4.043 30 C -0.139 4.139 31 H 0.243 0.757 32 H 0.358 0.642 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.416 0.584 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.258 0.742 41 H 0.262 0.738 42 H 0.163 0.837 43 H 0.141 0.859 44 H 0.066 0.934 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 -26.483 9.424 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.952 3.048 4 H -0.223 1.223 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.036 3.964 11 H 0.097 0.903 12 C -0.193 4.193 13 C -0.111 4.111 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.358 5.358 17 C 0.339 3.661 18 O -0.464 6.464 19 C -0.151 4.151 20 C -0.069 4.069 21 C -0.147 4.147 22 C 0.054 3.946 23 N -0.120 5.120 24 C -0.117 4.117 25 N -0.173 5.173 26 N -0.174 5.174 27 C -0.114 4.114 28 C -0.150 4.150 29 C -0.062 4.062 30 C -0.178 4.178 31 H 0.053 0.947 32 H 0.190 0.810 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.183 0.817 39 H 0.189 0.811 40 H 0.273 0.727 41 H 0.278 0.722 42 H 0.181 0.819 43 H 0.159 0.841 44 H 0.084 0.916 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.459 -25.852 10.318 29.399 hybrid contribution -1.025 -0.596 -0.844 1.455 sum 8.435 -26.449 9.474 29.333 Atomic orbital electron populations 1.71003 1.07304 1.27808 1.56506 1.27220 0.97102 1.04846 1.00785 0.82630 0.73363 0.71568 0.77210 1.22253 1.20305 1.20210 1.20485 0.92516 0.87178 1.46233 0.91132 1.42653 1.04536 1.02121 1.88909 1.21931 0.95545 0.83443 0.95519 0.90279 1.23714 1.01146 0.96088 0.98359 1.22460 0.99603 0.92834 0.96211 0.85591 1.21254 0.94820 0.91504 0.91051 1.45799 1.14045 1.34088 1.41858 1.18611 0.86210 0.80410 0.80822 1.90788 1.17058 1.71552 1.66994 1.20029 0.95401 0.99415 1.00301 1.21447 0.92125 0.97914 0.95443 1.21127 1.02155 0.94580 0.96849 1.18093 0.92634 0.92591 0.91286 1.44400 1.09709 1.26919 1.30931 1.27519 1.03208 0.89079 0.91914 1.74189 0.96535 1.23948 1.22639 1.74184 1.19231 1.08132 1.15847 1.27580 0.85770 1.01141 0.96908 1.21017 0.91923 1.01988 1.00081 1.21198 1.00895 0.91720 0.92417 1.23348 0.99845 0.95929 0.98700 0.94699 0.81010 0.91080 0.92781 0.93400 0.91279 0.74558 0.81689 0.81101 0.72662 0.72223 0.81906 0.84080 0.91581 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.26 13.70 21.65 0.30 -60.96 16 2 C -0.11 -6.25 5.50 84.86 0.47 -5.79 16 3 Si 1.13 51.07 29.92 68.60 2.05 53.12 16 4 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.33 -18.27 9.97 84.03 0.84 -17.44 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 9 N -0.74 -36.38 5.40 -320.47 -1.73 -38.11 16 10 C 0.14 5.20 4.48 45.52 0.20 5.40 16 11 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 12 C -0.15 -4.40 7.43 31.12 0.23 -4.17 16 13 C -0.09 -1.92 3.75 -10.27 -0.04 -1.96 16 14 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.14 2.94 5.51 86.38 0.48 3.42 16 16 N -0.71 -11.55 5.51 -466.14 -2.57 -14.11 16 17 C 0.55 11.11 7.77 86.73 0.67 11.78 16 18 O -0.58 -17.11 16.34 -3.94 -0.06 -17.17 16 19 C -0.15 -1.93 5.87 -20.08 -0.12 -2.05 16 20 C -0.05 -0.32 9.53 22.50 0.21 -0.10 16 21 C -0.13 -0.56 9.46 22.34 0.21 -0.35 16 22 C 0.15 1.05 6.65 38.23 0.25 1.31 16 23 N -0.43 -3.98 2.99 -353.76 -1.06 -5.03 16 24 C 0.17 1.87 12.06 179.84 2.17 4.04 16 25 N -0.34 -6.60 12.20 -59.46 -0.73 -7.32 16 26 N -0.34 -6.53 12.20 -59.47 -0.73 -7.26 16 27 C 0.17 1.78 12.06 179.84 2.17 3.95 16 28 C -0.13 -0.94 9.46 22.34 0.21 -0.73 16 29 C -0.04 -0.51 9.58 22.50 0.22 -0.29 16 30 C -0.14 -3.89 7.39 31.12 0.23 -3.66 16 31 H 0.24 15.18 6.77 -92.71 -0.63 14.55 16 32 H 0.36 18.66 6.76 -92.71 -0.63 18.03 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.83 7.90 -2.38 -0.02 1.82 16 35 H 0.05 1.28 7.85 -2.39 -0.02 1.27 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.42 3.84 6.50 -92.71 -0.60 3.24 16 38 H 0.17 0.16 6.39 -2.91 -0.02 0.14 16 39 H 0.17 -0.33 6.84 -2.91 -0.02 -0.35 16 40 H 0.26 0.49 7.17 -2.91 -0.02 0.47 16 41 H 0.26 0.10 7.17 -2.91 -0.02 0.08 16 42 H 0.16 0.31 6.84 -2.91 -0.02 0.29 16 43 H 0.14 1.88 7.64 -2.91 -0.02 1.86 16 44 H 0.07 2.05 8.08 -2.38 -0.02 2.03 16 45 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -85.23 380.47 3.85 -81.37 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.03 Total: 22.11 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 8.41 Total: -6.64 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -6.51 Total: -132.79 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.06 Total: -17.17 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -85.23 3.85 -81.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086225487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.180 kcal (2) G-P(sol) polarization free energy of solvation -85.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds