Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08998 * 112.85361 * 336.46850 * 10 9 7 12 12 C 1.53778 * 113.61557 * 107.77738 * 10 9 7 13 13 C 1.53785 * 87.08457 * 139.98112 * 12 10 9 14 14 H 1.09000 * 113.69324 * 89.12487 * 13 12 10 15 15 C 1.52995 * 113.61616 * 220.02571 * 13 12 10 16 16 N 1.46505 * 109.46751 * 272.49045 * 15 13 12 17 17 C 1.34779 * 120.00103 * 179.97438 * 16 15 13 18 18 O 1.21606 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.47420 * 120.00008 * 180.02562 * 17 16 15 20 20 C 1.41360 * 126.40890 * 0.02998 * 19 17 16 21 21 N 1.30452 * 108.07821 * 179.97438 * 20 19 17 22 22 N 1.39929 * 108.91337 * 359.97438 * 21 20 19 23 23 C 1.39918 * 125.77503 * 180.02562 * 22 21 20 24 24 C 1.39331 * 120.85222 * 179.69395 * 23 22 21 25 25 C 1.38013 * 119.07352 * 179.75645 * 24 23 22 26 26 N 1.31940 * 120.83327 * 0.53632 * 25 24 23 27 27 C 1.31937 * 121.88748 * 359.73491 * 26 25 24 28 28 C 1.38014 * 120.82832 * 359.97438 * 27 26 25 29 29 C 1.34608 * 108.45061 * 359.75543 * 22 21 20 30 30 C 1.53786 * 113.61394 * 205.27710 * 10 9 7 31 31 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.61721 * 254.52733 * 12 10 9 34 34 H 1.09004 * 113.61436 * 25.43627 * 12 10 9 35 35 H 1.09000 * 109.47385 * 32.48954 * 15 13 12 36 36 H 1.09005 * 109.47361 * 152.49686 * 15 13 12 37 37 H 0.96996 * 119.99797 * 0.02562 * 16 15 13 38 38 H 1.08005 * 125.96312 * 359.97438 * 20 19 17 39 39 H 1.07997 * 120.46473 * 0.02562 * 24 23 22 40 40 H 1.07999 * 119.58008 * 180.25293 * 25 24 23 41 41 H 1.07991 * 119.58515 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.45593 * 179.97438 * 28 27 26 43 43 H 1.08003 * 126.31668 * 180.26881 * 29 22 21 44 44 H 1.08999 * 113.61272 * 334.56869 * 30 10 9 45 45 H 1.09001 * 113.61514 * 105.47520 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0656 -3.5621 -0.4098 12 6 1.9986 -4.4084 1.3352 13 6 1.8477 -5.7001 0.5144 14 1 2.7976 -6.1660 0.2522 15 6 0.8443 -6.6903 1.1089 16 7 1.5252 -7.5529 2.0778 17 6 0.8346 -8.5077 2.7321 18 8 -0.3535 -8.6534 2.5178 19 6 1.5197 -9.3753 3.7074 20 6 2.8877 -9.3246 4.0598 21 7 3.1102 -10.2494 4.9526 22 7 1.9136 -10.9267 5.2121 23 6 1.7514 -11.9847 6.1132 24 6 0.5063 -12.5828 6.2963 25 6 0.3890 -13.6271 7.1909 26 7 1.4341 -14.0522 7.8750 27 6 2.6278 -13.5082 7.7336 28 6 2.8293 -12.4634 6.8547 29 6 0.9437 -10.3844 4.4524 30 6 1.2602 -4.8260 -0.6063 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 2.9265 -4.3591 1.9050 34 1 1.1200 -4.1660 1.9332 35 1 0.0455 -6.1423 1.6087 36 1 0.4217 -7.3022 0.3119 37 1 2.4728 -7.4364 2.2490 38 1 3.6208 -8.6398 3.6598 39 1 -0.3540 -12.2369 5.7426 40 1 -0.5713 -14.0994 7.3361 41 1 3.4577 -13.8859 8.3122 42 1 3.8089 -12.0224 6.7440 43 1 -0.0933 -10.6850 4.4283 44 1 0.1799 -4.6977 -0.5391 45 1 1.5921 -5.1139 -1.6039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086236494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 115.362170 kcal Electronic energy + Delta-G solvation = -27068.895501 eV Core-core repulsion = 23089.278387 eV Total energy + Delta-G solvation = -3979.617114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32993 -40.53484 -39.51392 -38.35862 -35.03653 -34.67387 -33.29527 -32.14725 -31.01200 -30.84590 -30.12042 -27.49904 -25.11269 -24.94497 -24.47496 -23.84553 -22.63503 -21.66217 -21.01876 -20.39235 -19.38693 -18.86899 -17.25041 -17.01454 -16.71334 -16.48046 -16.19283 -15.99516 -15.62316 -15.25350 -14.86761 -14.77753 -14.65683 -14.39083 -14.25389 -13.92665 -13.56658 -13.35632 -13.27233 -12.92756 -12.48503 -11.92912 -11.83314 -11.64769 -11.53207 -11.40581 -11.24561 -10.86440 -10.54249 -10.31959 -10.23532 -10.12825 -9.95026 -9.91367 -9.90883 -9.84147 -9.51201 -9.19745 -8.93484 -8.87796 -6.97338 -5.79609 -3.08427 -0.00318 0.42071 1.35836 1.51821 1.70466 3.08526 3.14844 3.21747 3.41532 3.47125 3.49482 3.68883 3.80530 3.98373 4.20133 4.25598 4.45103 4.57196 4.58752 4.70897 4.82482 4.93333 4.96198 5.04459 5.11639 5.17212 5.24836 5.34736 5.45604 5.49475 5.77564 5.81120 5.84489 5.86273 5.92900 6.08234 6.23398 6.29883 6.30111 6.34959 6.43058 6.58224 6.81368 6.85579 7.10156 7.30127 7.42627 7.68396 8.12499 8.39021 9.50175 10.08565 10.42576 11.42819 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.001530 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.743628 B =18301.701268 C =18617.006245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.134 3.866 16 N -0.718 5.718 17 C 0.590 3.410 18 O -0.547 6.547 19 C -0.271 4.271 20 C 0.098 3.902 21 N -0.286 5.286 22 N -0.320 5.320 23 C 0.203 3.797 24 C -0.195 4.195 25 C 0.129 3.871 26 N -0.492 5.492 27 C 0.125 3.875 28 C -0.172 4.172 29 C 0.129 3.871 30 C -0.142 4.142 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.201 0.799 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.195 0.805 44 H 0.081 0.919 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -29.187 12.208 32.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.011 3.989 16 N -0.368 5.368 17 C 0.377 3.623 18 O -0.426 6.426 19 C -0.285 4.285 20 C -0.092 4.092 21 N -0.103 5.103 22 N -0.093 5.093 23 C 0.102 3.898 24 C -0.218 4.218 25 C -0.028 4.028 26 N -0.201 5.201 27 C -0.032 4.032 28 C -0.193 4.193 29 C -0.017 4.017 30 C -0.182 4.182 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.218 0.782 39 H 0.164 0.836 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.169 0.831 43 H 0.211 0.789 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.066 -30.369 13.393 33.576 hybrid contribution 0.118 2.185 -1.047 2.426 sum 5.184 -28.184 12.346 31.203 Atomic orbital electron populations 1.69674 1.05140 1.25629 1.57527 1.24771 0.95520 0.97793 1.02847 0.86123 0.78785 0.84111 0.77194 1.20534 1.21847 1.21871 1.19354 0.91105 0.84254 1.42816 0.91034 1.42423 1.05777 0.99900 1.86977 1.21526 0.95324 0.85048 0.92803 0.90668 1.23950 1.01385 0.94935 0.99898 1.22648 0.98395 0.94368 0.99265 0.89322 1.21471 0.95322 0.91357 0.90787 1.45803 1.13155 1.34798 1.43043 1.17110 0.85988 0.79568 0.79655 1.90799 1.14909 1.70896 1.65950 1.20453 0.94574 1.05135 1.08300 1.24363 0.95558 0.95800 0.93462 1.77281 1.03046 1.10009 1.19917 1.45586 1.07313 1.25522 1.30859 1.17827 0.95206 0.86798 0.89936 1.21979 0.96310 1.00025 1.03467 1.22723 0.98038 0.91917 0.90083 1.67737 0.99687 1.29073 1.23645 1.22801 0.94988 0.91153 0.94226 1.21984 0.99795 0.99468 0.98083 1.23082 0.95748 0.92776 0.90112 1.23457 1.01074 0.96975 0.96720 0.93501 0.78063 0.92758 0.90319 0.91027 0.91578 0.76680 0.78236 0.83631 0.81432 0.81557 0.83075 0.78850 0.90078 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.51 5.40 -52.64 -0.28 -17.80 16 10 C 0.17 3.09 4.48 -67.12 -0.30 2.79 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.53 7.43 -25.92 -0.19 -2.72 16 13 C -0.13 -1.59 3.76 -89.80 -0.34 -1.93 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 15 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 16 N -0.72 -7.50 5.55 -61.38 -0.34 -7.84 16 17 C 0.59 7.12 7.81 -12.52 -0.10 7.02 16 18 O -0.55 -8.59 16.90 5.27 0.09 -8.50 16 19 C -0.27 -2.63 6.13 -105.05 -0.64 -3.28 16 20 C 0.10 0.79 11.50 -16.95 -0.19 0.60 16 21 N -0.29 -2.71 11.87 30.88 0.37 -2.34 16 22 N -0.32 -2.84 3.76 -10.03 -0.04 -2.88 16 23 C 0.20 1.56 6.73 -83.36 -0.56 1.00 16 24 C -0.20 -1.12 9.52 -39.26 -0.37 -1.50 16 25 C 0.13 0.72 11.17 -17.59 -0.20 0.52 16 26 N -0.49 -3.55 10.36 -13.32 -0.14 -3.69 16 27 C 0.13 0.75 11.18 -17.59 -0.20 0.55 16 28 C -0.17 -1.17 9.73 -39.26 -0.38 -1.55 16 29 C 0.13 1.13 10.64 -16.42 -0.17 0.95 16 30 C -0.14 -2.18 7.39 -25.91 -0.19 -2.37 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.39 10.11 7.92 -40.82 -0.32 9.79 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 35 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 3.05 7.43 -40.82 -0.30 2.75 16 38 H 0.20 0.92 7.50 -52.48 -0.39 0.52 16 39 H 0.15 0.53 6.85 -52.49 -0.36 0.17 16 40 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.15 0.96 7.78 -52.49 -0.41 0.55 16 43 H 0.19 1.26 7.09 -52.48 -0.37 0.88 16 44 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -35.29 387.52 -8.81 -44.10 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.90 Total: 8.81 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -4.11 Total: -5.58 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.29 Total: -61.81 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.29 -8.81 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086236494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.464 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds