Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85556 * 336.19726 * 10 9 7 12 12 C 1.53788 * 113.61090 * 107.50380 * 10 9 7 13 13 C 1.53788 * 87.08004 * 139.98063 * 12 10 9 14 14 H 1.09003 * 113.61671 * 89.11356 * 13 12 10 15 15 C 1.53003 * 113.68853 * 220.01077 * 13 12 10 16 16 N 1.46503 * 109.46514 * 272.52956 * 15 13 12 17 17 C 1.34783 * 119.99656 * 179.97438 * 16 15 13 18 18 O 1.21572 * 120.00065 * 0.02562 * 17 16 15 19 19 C 1.47717 * 120.00234 * 180.02562 * 17 16 15 20 20 C 1.39710 * 120.02143 * 359.72868 * 19 17 16 21 21 C 1.37665 * 119.97440 * 179.74003 * 20 19 17 22 22 C 1.39506 * 120.02015 * 0.50947 * 21 20 19 23 23 C 1.48287 * 119.97234 * 179.74250 * 22 21 20 24 24 N 1.34022 * 125.65543 * 179.71715 * 23 22 21 25 25 C 1.30638 * 109.78571 * 179.87882 * 24 23 22 26 26 N 1.34576 * 108.30732 * 0.38019 * 25 24 23 27 27 H 0.97004 * 126.74226 * 179.76810 * 26 25 24 28 28 N 1.31553 * 125.65659 * 0.02562 * 23 22 21 29 29 C 1.39493 * 120.05230 * 359.76728 * 22 21 20 30 30 C 1.37669 * 120.02366 * 359.97355 * 29 22 21 31 31 C 1.53780 * 113.61432 * 204.99886 * 10 9 7 32 32 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 33 33 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 34 34 H 1.08994 * 113.61239 * 254.52531 * 12 10 9 35 35 H 1.08997 * 113.61460 * 25.43216 * 12 10 9 36 36 H 1.08995 * 109.47035 * 32.53235 * 15 13 12 37 37 H 1.09003 * 109.46905 * 152.53817 * 15 13 12 38 38 H 0.96991 * 120.00733 * 0.02562 * 16 15 13 39 39 H 1.08006 * 120.01534 * 0.02562 * 20 19 17 40 40 H 1.07998 * 119.99218 * 180.25609 * 21 20 19 41 41 H 1.08003 * 125.84821 * 180.14885 * 25 24 23 42 42 H 1.07996 * 119.98792 * 180.02562 * 29 22 21 43 43 H 1.08006 * 120.00702 * 179.97438 * 30 29 22 44 44 H 1.08999 * 113.61484 * 334.56886 * 31 10 9 45 45 H 1.08995 * 113.61500 * 105.47253 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9992 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 2.7988 -6.1634 0.2699 15 6 0.8456 -6.6865 1.1277 16 7 1.5270 -7.5443 2.1004 17 6 0.8371 -8.4972 2.7583 18 8 -0.3504 -8.6452 2.5441 19 6 1.5239 -9.3618 3.7395 20 6 2.8898 -9.1960 3.9819 21 6 3.5278 -9.9987 4.9005 22 6 2.8131 -10.9845 5.5814 23 6 3.5026 -11.8524 6.5664 24 7 2.9287 -12.8268 7.2856 25 6 3.8209 -13.3943 8.0528 26 7 5.0032 -12.7848 7.8484 27 1 5.8456 -12.9920 8.2825 28 7 4.7778 -11.7897 6.8834 29 6 1.4505 -11.1548 5.3359 30 6 0.8094 -10.3496 4.4216 31 6 1.2604 -4.8287 -0.5949 32 1 -0.4850 0.8401 0.0004 33 1 0.3557 -2.3880 0.0005 34 1 2.9272 -4.3500 1.9136 35 1 1.1209 -4.1569 1.9415 36 1 0.0460 -6.1374 1.6248 37 1 0.4242 -7.3021 0.3329 38 1 2.4743 -7.4261 2.2717 39 1 3.4441 -8.4352 3.4522 40 1 4.5827 -9.8680 5.0911 41 1 3.6399 -14.2102 8.7369 42 1 0.8982 -11.9180 5.8639 43 1 -0.2455 -10.4820 4.2314 44 1 0.1800 -4.7002 -0.5280 45 1 1.5919 -5.1211 -1.5912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086245189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 108.248415 kcal Electronic energy + Delta-G solvation = -27001.148749 eV Core-core repulsion = 23021.223159 eV Total energy + Delta-G solvation = -3979.925590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58963 -40.36382 -38.90229 -38.14912 -34.77875 -33.73052 -33.27207 -32.39586 -31.39770 -30.64832 -30.10968 -27.46068 -25.09511 -24.91553 -23.75653 -23.71723 -22.28693 -21.50877 -21.05188 -20.37679 -19.11612 -19.01303 -18.04423 -17.02907 -16.35991 -16.31450 -16.01492 -15.52360 -15.39299 -15.22648 -14.72480 -14.62457 -14.48632 -13.96223 -13.75153 -13.50080 -13.43735 -12.99780 -12.82523 -12.74760 -12.43410 -11.90309 -11.80990 -11.49977 -11.37978 -11.23068 -10.97855 -10.83014 -10.64033 -10.53369 -10.51755 -10.27999 -10.13983 -9.91455 -9.82249 -9.48646 -9.36899 -9.13504 -8.89142 -8.85115 -6.95420 -5.77487 -3.06385 0.12673 1.03366 1.17479 2.05909 2.24196 2.91743 3.08127 3.40505 3.43331 3.48358 3.50216 3.64374 4.02470 4.32673 4.49571 4.55284 4.59133 4.65444 4.96113 4.98288 5.01277 5.14372 5.24078 5.31115 5.47461 5.50099 5.52558 5.62861 5.66604 5.83095 5.85138 5.93640 5.94919 6.04154 6.07283 6.10234 6.25127 6.31962 6.37010 6.42138 6.43957 6.47615 6.60447 6.83574 7.12374 7.42774 7.45292 7.69703 8.12173 8.41093 9.52123 10.10598 10.44692 11.44851 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.001601 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.799394 B =17484.976346 C =18350.200131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.718 5.718 17 C 0.552 3.448 18 O -0.536 6.536 19 C -0.114 4.114 20 C -0.090 4.090 21 C -0.090 4.090 22 C 0.002 3.998 23 C 0.267 3.733 24 N -0.533 5.533 25 C 0.267 3.733 26 N -0.483 5.483 27 H 0.444 0.556 28 N -0.300 5.300 29 C -0.082 4.082 30 C -0.065 4.065 31 C -0.142 4.142 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.226 0.774 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.081 0.919 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -30.617 15.087 35.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.370 5.370 17 C 0.339 3.661 18 O -0.414 6.414 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.110 4.110 22 C -0.001 4.001 23 C -0.012 4.012 24 N -0.260 5.260 25 C -0.033 4.033 26 N -0.202 5.202 27 H 0.290 0.710 28 N -0.130 5.130 29 C -0.102 4.102 30 C -0.084 4.084 31 C -0.182 4.182 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.243 0.757 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.482 -30.096 14.561 34.752 hybrid contribution 1.271 0.547 0.766 1.582 sum 10.753 -29.548 15.327 34.981 Atomic orbital electron populations 1.69664 1.05131 1.25736 1.57441 1.24768 0.95517 0.97776 1.02837 0.86192 0.78649 0.83840 0.77506 1.21724 1.20751 1.21761 1.19306 0.91071 0.84269 1.42945 0.91100 1.42413 1.05774 0.99880 1.86994 1.21523 0.95317 0.85058 0.92777 0.90670 1.23957 1.01394 0.94902 0.99960 1.22652 0.98384 0.94401 0.99282 0.89361 1.21490 0.95366 0.91524 0.90769 1.45987 1.13344 1.35011 1.42613 1.18235 0.86665 0.80376 0.80809 1.90792 1.14956 1.70190 1.65489 1.20186 0.94185 0.98346 0.99078 1.21239 0.93373 0.98884 0.97368 1.21097 1.00513 0.94126 0.95295 1.17618 0.93065 0.94713 0.94713 1.22341 0.88054 0.94456 0.96363 1.70531 1.32990 1.11255 1.11253 1.26153 0.81432 0.97890 0.97789 1.48157 1.12320 1.26807 1.32886 0.70968 1.78264 1.17107 1.09752 1.07866 1.21184 0.92872 0.99127 0.97056 1.21244 1.00899 0.92645 0.93566 1.23447 1.01079 0.96973 0.96677 0.93452 0.78051 0.92770 0.90299 0.90962 0.91509 0.76502 0.84836 0.84509 0.75738 0.83967 0.83861 0.90060 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.76 5.40 -52.64 -0.28 -18.04 16 10 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.16 -2.63 7.43 -25.91 -0.19 -2.82 16 13 C -0.13 -1.68 3.75 -89.80 -0.34 -2.01 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 1.72 5.51 -4.04 -0.02 1.69 16 16 N -0.72 -8.21 5.51 -61.29 -0.34 -8.54 16 17 C 0.55 7.22 7.77 -12.38 -0.10 7.13 16 18 O -0.54 -8.95 16.33 5.30 0.09 -8.87 16 19 C -0.11 -1.22 5.88 -104.93 -0.62 -1.83 16 20 C -0.09 -0.77 9.52 -39.24 -0.37 -1.15 16 21 C -0.09 -0.78 9.66 -39.32 -0.38 -1.16 16 22 C 0.00 0.02 5.88 -104.82 -0.62 -0.60 16 23 C 0.27 2.59 7.77 -156.59 -1.22 1.37 16 24 N -0.53 -4.52 10.81 -12.39 -0.13 -4.65 16 25 C 0.27 1.13 13.11 -90.68 -1.19 -0.05 16 26 N -0.48 -2.20 7.44 29.52 0.22 -1.98 16 27 H 0.44 0.30 8.96 -182.34 -1.63 -1.33 16 28 N -0.30 -2.65 12.42 32.09 0.40 -2.25 16 29 C -0.08 -0.76 9.67 -39.32 -0.38 -1.14 16 30 C -0.06 -0.66 9.58 -39.24 -0.38 -1.03 16 31 C -0.14 -2.23 7.39 -25.92 -0.19 -2.43 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 36 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 3.51 6.49 -40.82 -0.26 3.25 16 39 H 0.13 0.83 6.39 -52.48 -0.34 0.50 16 40 H 0.14 1.04 7.82 -52.49 -0.41 0.63 16 41 H 0.23 -0.24 8.06 -52.48 -0.42 -0.67 16 42 H 0.14 1.17 7.82 -52.49 -0.41 0.76 16 43 H 0.14 1.43 7.64 -52.48 -0.40 1.03 16 44 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -36.70 386.45 -12.16 -48.85 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.10 Total: 8.39 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -6.53 Total: -8.56 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.59 Total: -62.96 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.70 -12.16 -48.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086245189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.103 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds