Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47237 * 269.99708 * 3 2 1 5 5 H 1.48498 * 109.47075 * 30.00153 * 3 2 1 6 6 H 1.48503 * 109.46801 * 149.99973 * 3 2 1 7 7 C 1.38818 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.90816 * 23.74240 * 10 9 7 12 12 C 1.53784 * 113.61491 * 154.99680 * 10 9 7 13 13 C 1.53787 * 87.07923 * 139.97939 * 12 10 9 14 14 H 1.08998 * 113.61103 * 89.12089 * 13 12 10 15 15 C 1.53001 * 113.61313 * 219.93272 * 13 12 10 16 16 N 1.46498 * 109.46735 * 185.00228 * 15 13 12 17 17 C 1.34778 * 119.99710 * 180.02562 * 16 15 13 18 18 O 1.21569 * 120.00053 * 359.97438 * 17 16 15 19 19 C 1.47754 * 120.00248 * 179.97438 * 17 16 15 20 20 C 1.40597 * 126.04957 * 179.71463 * 19 17 16 21 21 N 1.31251 * 106.62907 * 179.82707 * 20 19 17 22 22 N 1.40103 * 107.17674 * 0.42715 * 21 20 19 23 23 C 1.40138 * 125.57162 * 179.75523 * 22 21 20 24 24 C 1.38854 * 120.06975 * 179.68477 * 23 22 21 25 25 C 1.38115 * 119.92818 * 179.74372 * 24 23 22 26 26 C 1.38284 * 120.06770 * 0.50845 * 25 24 23 27 27 C 1.38281 * 120.14009 * 359.76302 * 26 25 24 28 28 C 1.38114 * 120.06620 * 359.97438 * 27 26 25 29 29 N 1.28714 * 108.86385 * 359.71760 * 22 21 20 30 30 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 31 31 H 0.97002 * 119.99808 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61451 * 25.43425 * 12 10 9 34 34 H 1.08994 * 113.61477 * 254.52726 * 12 10 9 35 35 H 1.08997 * 109.47307 * 305.00415 * 15 13 12 36 36 H 1.09003 * 109.47172 * 65.00320 * 15 13 12 37 37 H 0.96995 * 120.00713 * 359.97438 * 16 15 13 38 38 H 1.08003 * 126.68510 * 359.97438 * 20 19 17 39 39 H 1.08004 * 120.03757 * 359.97130 * 24 23 22 40 40 H 1.08000 * 119.96707 * 180.26964 * 25 24 23 41 41 H 1.08006 * 119.92921 * 179.74427 * 26 25 24 42 42 H 1.07993 * 119.96724 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.03365 * 180.02562 * 28 27 26 44 44 H 1.08999 * 113.61111 * 139.98327 * 30 13 12 45 45 H 1.08999 * 113.61280 * 270.79710 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2601 -4.8288 0.5961 13 6 1.8479 -5.6976 -0.5285 14 1 2.7984 -6.1635 -0.2688 15 6 0.8453 -6.6867 -1.1265 16 7 1.5266 -7.5444 -2.0992 17 6 0.8367 -8.4973 -2.7569 18 8 -0.3507 -8.6453 -2.5426 19 6 1.5236 -9.3622 -3.7385 20 6 0.9325 -10.3940 -4.4885 21 7 1.8817 -10.9058 -5.2366 22 7 3.0596 -10.2044 -4.9478 23 6 4.3127 -10.4411 -5.5289 24 6 5.4070 -9.6694 -5.1613 25 6 6.6418 -9.9087 -5.7320 26 6 6.7866 -10.9086 -6.6762 27 6 5.6975 -11.6751 -7.0485 28 6 4.4613 -11.4442 -6.4775 29 7 2.8027 -9.3064 -4.0621 30 6 1.9990 -4.4022 -1.3432 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 0.1798 -4.7002 0.5292 34 1 1.5917 -5.1212 1.5924 35 1 0.4239 -7.3021 -0.3317 36 1 0.0456 -6.1375 -1.6236 37 1 2.4739 -7.4262 -2.2705 38 1 -0.1018 -10.7034 -4.4571 39 1 5.2935 -8.8854 -4.4273 40 1 7.4943 -9.3118 -5.4433 41 1 7.7523 -11.0911 -7.1241 42 1 5.8137 -12.4549 -7.7865 43 1 3.6111 -12.0434 -6.7684 44 1 2.9270 -4.3502 -1.9125 45 1 1.1212 -4.1578 -1.9414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086269136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 135.944232 kcal Electronic energy + Delta-G solvation = -27392.450145 eV Core-core repulsion = 23413.725536 eV Total energy + Delta-G solvation = -3978.724609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.09557 -39.89698 -39.48539 -38.40084 -34.82009 -34.31707 -33.38546 -32.77820 -31.51129 -30.43693 -29.94249 -27.53480 -25.20546 -25.07161 -24.13963 -23.72639 -22.47142 -21.84483 -21.06652 -20.59473 -19.13546 -18.84777 -17.63348 -17.02400 -16.83468 -16.79001 -16.03976 -15.75731 -15.34869 -15.14042 -14.83489 -14.63598 -14.55930 -14.08758 -14.04940 -13.56185 -13.53558 -13.21895 -12.94723 -12.60884 -12.14458 -11.93810 -11.90744 -11.82219 -11.41557 -11.37643 -11.24822 -11.21328 -10.84405 -10.65549 -10.60812 -10.41341 -10.16847 -10.02601 -9.83462 -9.61987 -9.51052 -9.13690 -8.86988 -8.78219 -6.96249 -5.78264 -3.07029 0.04135 0.73253 1.27394 1.44384 1.50857 2.92379 3.02379 3.18543 3.30823 3.42661 3.47695 3.49530 4.27202 4.28578 4.40906 4.50081 4.58199 4.62050 4.74843 4.86255 4.95711 4.96968 5.06205 5.16668 5.22895 5.38409 5.46475 5.47375 5.50382 5.71675 5.75597 5.80177 5.82811 5.89377 5.92347 6.01593 6.08991 6.20324 6.30187 6.35558 6.41054 6.42272 6.59858 6.82388 7.11226 7.20207 7.44741 7.69006 7.97890 8.40300 9.51341 10.09763 10.43928 11.44058 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.001910 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.343903 B =14654.898397 C =16195.715434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.141 4.141 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.707 5.707 17 C 0.603 3.397 18 O -0.528 6.528 19 C -0.050 4.050 20 C 0.081 3.919 21 N -0.279 5.279 22 N -0.161 5.161 23 C 0.153 3.847 24 C -0.110 4.110 25 C -0.098 4.098 26 C -0.116 4.116 27 C -0.101 4.101 28 C -0.107 4.107 29 N -0.201 5.201 30 C -0.161 4.161 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.407 0.593 38 H 0.220 0.780 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -27.188 -12.426 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.181 4.181 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.357 5.357 17 C 0.386 3.614 18 O -0.403 6.403 19 C -0.217 4.217 20 C -0.110 4.110 21 N -0.106 5.106 22 N -0.053 5.053 23 C 0.062 3.938 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.135 4.135 27 C -0.120 4.120 28 C -0.128 4.128 29 N -0.045 5.045 30 C -0.202 4.202 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.241 0.759 38 H 0.237 0.763 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.072 0.928 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.945 -27.342 -12.794 32.465 hybrid contribution -0.288 1.108 0.188 1.160 sum 11.657 -26.234 -12.605 31.353 Atomic orbital electron populations 1.69662 1.05121 1.25732 1.57456 1.24776 0.95536 0.97796 1.02879 0.86187 0.78647 0.83827 0.77506 1.21725 1.21766 1.20751 1.19301 0.91060 0.84255 1.42895 0.91111 1.42409 1.05770 0.99874 1.86983 1.21516 0.95320 0.85048 0.92749 0.90667 1.23450 1.01085 0.96929 0.96655 1.22651 0.98402 0.94365 0.99300 0.89296 1.21557 0.95429 0.91508 0.90663 1.45903 1.13694 1.34213 1.41920 1.16657 0.85765 0.79600 0.79427 1.90839 1.14041 1.70187 1.65201 1.23090 0.89595 1.03329 1.05691 1.25189 1.00752 0.93034 0.92056 1.78045 0.91205 1.18897 1.22428 1.48277 1.07695 1.21909 1.27384 1.17412 0.79652 0.99333 0.97377 1.21026 0.91090 0.99726 1.01227 1.21110 0.96618 0.97797 0.96178 1.21378 0.99338 0.95461 0.97287 1.21081 0.91554 0.99737 0.99580 1.20945 0.99306 0.96906 0.95676 1.73725 1.17032 1.09679 1.04092 1.23959 1.01431 0.94874 0.99973 0.93457 0.78046 0.90016 0.91943 0.91241 0.90716 0.75850 0.76349 0.83970 0.84433 0.85002 0.84601 0.84108 0.92771 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -17.66 5.40 -52.63 -0.28 -17.94 16 10 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.14 -2.20 7.39 -25.91 -0.19 -2.39 16 13 C -0.13 -1.68 3.75 -89.81 -0.34 -2.01 16 14 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 16 N -0.71 -8.38 5.55 -61.28 -0.34 -8.72 16 17 C 0.60 7.87 7.83 -12.37 -0.10 7.77 16 18 O -0.53 -8.27 16.90 5.30 0.09 -8.18 16 19 C -0.05 -0.59 7.09 -82.99 -0.59 -1.17 16 20 C 0.08 0.83 11.91 -16.91 -0.20 0.63 16 21 N -0.28 -3.04 11.90 30.85 0.37 -2.67 16 22 N -0.16 -1.78 4.44 32.48 0.14 -1.63 16 23 C 0.15 1.41 6.74 -83.60 -0.56 0.85 16 24 C -0.11 -0.85 9.61 -39.40 -0.38 -1.23 16 25 C -0.10 -0.55 10.04 -39.61 -0.40 -0.95 16 26 C -0.12 -0.55 10.04 -39.55 -0.40 -0.95 16 27 C -0.10 -0.53 10.04 -39.61 -0.40 -0.93 16 28 C -0.11 -0.80 9.65 -39.40 -0.38 -1.18 16 29 N -0.20 -2.30 10.95 33.29 0.36 -1.93 16 30 C -0.16 -2.64 7.43 -25.92 -0.19 -2.83 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.39 10.18 7.92 -40.82 -0.32 9.85 16 33 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 37 H 0.41 4.21 8.17 -40.82 -0.33 3.87 16 38 H 0.22 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.14 1.07 7.67 -52.48 -0.40 0.67 16 40 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.14 1.00 7.67 -52.48 -0.40 0.59 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -33.38 390.38 -8.82 -42.20 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.05 Total: 10.35 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.69 Total: -7.23 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.98 Total: -60.29 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.38 -8.82 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086269136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.144 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds