Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00321 * 2 1 4 4 H 1.48497 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47009 * 300.00006 * 3 2 1 6 6 H 1.48504 * 109.47028 * 59.99693 * 3 2 1 7 7 C 1.38819 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99535 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99635 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.90701 * 336.24716 * 10 9 7 12 12 C 1.53777 * 113.61444 * 107.50149 * 10 9 7 13 13 C 1.53779 * 87.07976 * 139.98117 * 12 10 9 14 14 H 1.08997 * 113.69375 * 89.12856 * 13 12 10 15 15 C 1.53005 * 113.61394 * 220.01573 * 13 12 10 16 16 N 1.46497 * 109.47332 * 272.50024 * 15 13 12 17 17 C 1.34772 * 120.00104 * 179.97438 * 16 15 13 18 18 O 1.21518 * 119.99912 * 359.97438 * 17 16 15 19 19 C 1.48157 * 120.00070 * 179.97438 * 17 16 15 20 20 C 1.39949 * 120.89169 * 359.97438 * 19 17 16 21 21 C 1.38038 * 119.13483 * 179.97438 * 20 19 17 22 22 N 1.31854 * 120.98347 * 0.02562 * 21 20 19 23 23 C 1.32227 * 121.97421 * 359.97438 * 22 21 20 24 24 N 1.39850 * 119.62856 * 179.97438 * 23 22 21 25 25 C 1.37172 * 126.48071 * 4.71465 * 24 23 22 26 26 C 1.34625 * 106.82422 * 179.89907 * 25 24 23 27 27 N 1.34156 * 108.21442 * 0.36411 * 26 25 24 28 28 C 1.30475 * 109.37160 * 359.76797 * 27 26 25 29 29 C 1.38913 * 120.74576 * 359.97438 * 23 22 21 30 30 C 1.53776 * 87.08352 * 334.56520 * 13 12 10 31 31 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00698 * 359.97438 * 9 7 2 33 33 H 1.08993 * 113.61604 * 25.42762 * 12 10 9 34 34 H 1.08998 * 113.61313 * 254.52640 * 12 10 9 35 35 H 1.09003 * 109.47149 * 152.49186 * 15 13 12 36 36 H 1.09004 * 109.46586 * 32.49614 * 15 13 12 37 37 H 0.97003 * 120.00053 * 359.97438 * 16 15 13 38 38 H 1.07993 * 120.43112 * 359.96117 * 20 19 17 39 39 H 1.08004 * 119.50966 * 180.02562 * 21 20 19 40 40 H 1.07996 * 126.59082 * 0.03346 * 25 24 23 41 41 H 1.07998 * 125.88901 * 180.13214 * 26 25 24 42 42 H 1.08006 * 125.72379 * 179.97438 * 28 27 26 43 43 H 1.07999 * 120.52597 * 179.97438 * 29 23 22 44 44 H 1.08999 * 113.61599 * 139.98018 * 30 13 12 45 45 H 1.09003 * 113.61504 * 270.80424 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0663 -3.5650 -0.4020 12 6 1.9980 -4.4016 1.3457 13 6 1.8475 -5.6973 0.5314 14 1 2.7975 -6.1645 0.2721 15 6 0.8440 -6.6847 1.1306 16 7 1.5244 -7.5422 2.1042 17 6 0.8336 -8.4937 2.7629 18 8 -0.3537 -8.6399 2.5497 19 6 1.5219 -9.3613 3.7471 20 6 2.8887 -9.2095 4.0068 21 6 3.4931 -10.0373 4.9314 22 7 2.8024 -10.9629 5.5675 23 6 1.5098 -11.1423 5.3544 24 7 0.8252 -12.1395 6.0563 25 6 1.3371 -12.9358 7.0491 26 6 0.3418 -13.7501 7.4474 27 7 -0.7476 -13.4694 6.7165 28 6 -0.4713 -12.5070 5.8800 29 6 0.8242 -10.3514 4.4411 30 6 1.2605 -4.8291 -0.5939 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.1194 -4.1560 1.9421 34 1 2.9257 -4.3493 1.9156 35 1 0.4217 -7.3005 0.3365 36 1 0.0450 -6.1341 1.6273 37 1 2.4721 -7.4253 2.2747 38 1 3.4630 -8.4547 3.4904 39 1 4.5475 -9.9251 5.1367 40 1 2.3442 -12.9125 7.4381 41 1 0.4098 -14.5023 8.2194 42 1 -1.1577 -12.0750 5.1667 43 1 -0.2315 -10.5013 4.2695 44 1 1.5928 -5.1219 -1.5898 45 1 0.1799 -4.7016 -0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086273879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 108.767386 kcal Electronic energy + Delta-G solvation = -27316.966588 eV Core-core repulsion = 23337.063502 eV Total energy + Delta-G solvation = -3979.903086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.82154 -41.04890 -39.65819 -38.53830 -35.16129 -34.68964 -33.55212 -33.20706 -30.80316 -30.30118 -29.75772 -27.83473 -25.26907 -25.14976 -24.70832 -23.82354 -22.32373 -21.44604 -21.19475 -20.82648 -19.55835 -18.96591 -17.68923 -17.11224 -17.07399 -16.45905 -16.29128 -15.93735 -15.65219 -15.37596 -14.83585 -14.80257 -14.42608 -14.35310 -14.26272 -14.17229 -13.84636 -13.63830 -13.43617 -13.02556 -12.69432 -12.03333 -11.93499 -11.52805 -11.34071 -11.31257 -10.92589 -10.84151 -10.61012 -10.59624 -10.57035 -10.38243 -10.19043 -10.09656 -9.92550 -9.60061 -9.38155 -9.29946 -8.96746 -8.94140 -7.03183 -5.84409 -3.13619 -0.09210 0.15007 1.62068 1.86138 2.46492 2.66136 2.68059 3.20676 3.38039 3.43591 3.46101 3.62269 3.93097 3.98187 4.15304 4.21187 4.30451 4.52347 4.64290 4.79565 4.83101 4.88659 4.91052 5.04900 5.09663 5.18664 5.28806 5.36456 5.39598 5.58469 5.66810 5.69542 5.71197 5.81964 6.00291 6.02086 6.18644 6.21156 6.24174 6.29522 6.48555 6.58396 6.71245 7.01087 7.06777 7.09267 7.51248 7.63540 7.75252 8.33916 9.45278 10.02890 10.36850 11.37887 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.001611 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.388560 B =17381.602653 C =17582.601544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.130 3.870 16 N -0.711 5.711 17 C 0.553 3.447 18 O -0.524 6.524 19 C -0.053 4.053 20 C -0.152 4.152 21 C 0.135 3.865 22 N -0.485 5.485 23 C 0.345 3.655 24 N -0.412 5.412 25 C -0.027 4.027 26 C -0.029 4.029 27 N -0.477 5.477 28 C 0.196 3.804 29 C -0.125 4.125 30 C -0.142 4.142 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.401 0.599 38 H 0.151 0.849 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.214 0.786 43 H 0.157 0.843 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -25.662 10.084 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.362 5.362 17 C 0.338 3.662 18 O -0.401 6.401 19 C -0.065 4.065 20 C -0.173 4.173 21 C -0.022 4.022 22 N -0.198 5.198 23 C 0.116 3.884 24 N -0.095 5.095 25 C -0.156 4.156 26 C -0.174 4.174 27 N -0.193 5.193 28 C -0.085 4.085 29 C -0.148 4.148 30 C -0.182 4.182 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.237 0.763 38 H 0.168 0.832 39 H 0.193 0.807 40 H 0.200 0.800 41 H 0.195 0.805 42 H 0.230 0.770 43 H 0.175 0.825 44 H 0.081 0.919 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.562 -26.444 10.551 29.218 hybrid contribution 1.055 1.900 -0.467 2.223 sum 7.616 -24.544 10.084 27.607 Atomic orbital electron populations 1.69667 1.05158 1.25706 1.57344 1.24778 0.95521 0.97829 1.02719 0.86123 0.78777 0.84062 0.77234 1.20524 1.21802 1.21836 1.19344 0.91101 0.84223 1.43066 0.91019 1.42416 1.05775 0.99879 1.86954 1.21511 0.95357 0.85082 0.92678 0.90612 1.23975 1.01422 0.94836 1.00077 1.22661 0.98329 0.94351 0.99430 0.89258 1.21581 0.95508 0.91534 0.90612 1.45953 1.13389 1.34645 1.42215 1.18000 0.86661 0.80623 0.80909 1.90824 1.14602 1.69732 1.64931 1.20290 0.93932 0.95742 0.96494 1.22438 0.94223 1.01143 0.99543 1.22612 1.00120 0.88784 0.90724 1.66876 1.05909 1.20842 1.26144 1.18029 0.88969 0.89409 0.91952 1.43146 1.11264 1.26570 1.28487 1.22946 1.01774 0.96238 0.94630 1.22447 0.89028 1.02865 1.03036 1.70365 1.28260 1.13424 1.07286 1.25478 0.83437 0.97136 1.02459 1.21646 1.02420 0.94925 0.95773 1.23457 1.01131 0.96935 0.96657 0.93447 0.78046 0.90279 0.92722 0.91207 0.90666 0.76322 0.83170 0.80652 0.79988 0.80549 0.76950 0.82541 0.91893 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.71 -17.06 5.40 -52.63 -0.28 -17.34 16 10 C 0.17 2.98 4.48 -67.11 -0.30 2.68 16 11 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.16 -2.40 7.43 -25.92 -0.19 -2.59 16 13 C -0.13 -1.47 3.75 -89.81 -0.34 -1.80 16 14 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.13 1.44 5.51 -4.04 -0.02 1.42 16 16 N -0.71 -6.40 5.51 -61.15 -0.34 -6.74 16 17 C 0.55 5.84 7.80 -12.19 -0.10 5.75 16 18 O -0.52 -7.49 16.44 5.35 0.09 -7.40 16 19 C -0.05 -0.43 5.91 -104.68 -0.62 -1.05 16 20 C -0.15 -0.82 9.61 -39.01 -0.37 -1.20 16 21 C 0.14 0.74 11.17 -17.62 -0.20 0.55 16 22 N -0.49 -3.94 9.87 -12.34 -0.12 -4.06 16 23 C 0.34 3.03 7.50 -154.42 -1.16 1.87 16 24 N -0.41 -3.73 2.98 -63.84 -0.19 -3.92 16 25 C -0.03 -0.22 11.17 -16.44 -0.18 -0.41 16 26 C -0.03 -0.26 11.85 -17.82 -0.21 -0.47 16 27 N -0.48 -5.08 11.24 -14.47 -0.16 -5.24 16 28 C 0.20 1.76 11.89 -89.60 -1.07 0.70 16 29 C -0.12 -1.06 9.07 -38.82 -0.35 -1.41 16 30 C -0.14 -2.05 7.39 -25.92 -0.19 -2.24 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.39 9.88 7.93 -40.82 -0.32 9.56 16 33 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 37 H 0.40 2.46 6.61 -40.82 -0.27 2.19 16 38 H 0.15 0.38 6.53 -52.49 -0.34 0.04 16 39 H 0.18 0.38 8.06 -52.48 -0.42 -0.05 16 40 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.21 1.27 7.07 -52.48 -0.37 0.90 16 43 H 0.16 1.23 6.46 -52.49 -0.34 0.89 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -34.78 384.77 -10.86 -45.64 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.81 Total: 8.73 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -5.55 Total: -5.40 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.37 Total: -64.16 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.40 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.78 -10.86 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086273879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.406 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds