Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.85438 * 334.66750 * 10 9 7 12 12 C 1.53785 * 113.61192 * 105.86506 * 10 9 7 13 13 C 1.53958 * 87.01874 * 139.94818 * 12 10 9 14 14 H 1.09008 * 113.53779 * 89.18998 * 13 12 10 15 15 C 1.52995 * 113.74351 * 220.05392 * 13 12 10 16 16 N 1.46506 * 109.47502 * 272.59992 * 15 13 12 17 17 C 1.34774 * 120.00215 * 180.02562 * 16 15 13 18 18 O 1.21552 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.47854 * 119.99862 * 180.02562 * 17 16 15 20 20 C 1.39618 * 120.11523 * 359.97438 * 19 17 16 21 21 C 1.37977 * 119.98534 * 179.97438 * 20 19 17 22 22 C 1.38263 * 120.21686 * 0.02562 * 21 20 19 23 23 C 1.38911 * 120.22789 * 359.97438 * 22 21 20 24 24 N 1.40271 * 119.99075 * 179.97438 * 23 22 21 25 25 C 1.36108 * 125.94817 * 5.00502 * 24 23 22 26 26 C 1.35362 * 106.05286 * 179.97438 * 25 24 23 27 27 N 1.33771 * 106.54050 * 0.02562 * 26 25 24 28 28 N 1.28610 * 109.05669 * 359.77017 * 27 26 25 29 29 C 1.38586 * 120.00951 * 359.74743 * 23 22 21 30 30 C 1.53779 * 87.11375 * 334.63919 * 13 12 10 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.09003 * 113.61587 * 254.52818 * 12 10 9 34 34 H 1.08999 * 113.61375 * 25.42858 * 12 10 9 35 35 H 1.08999 * 109.47466 * 32.59722 * 15 13 12 36 36 H 1.09002 * 109.47305 * 152.60246 * 15 13 12 37 37 H 0.97003 * 119.99639 * 359.97438 * 16 15 13 38 38 H 1.08004 * 120.00863 * 359.95578 * 20 19 17 39 39 H 1.08000 * 119.89088 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.88967 * 179.97438 * 22 21 20 41 41 H 1.08005 * 126.96786 * 359.97438 * 25 24 23 42 42 H 1.08004 * 126.73174 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.10329 * 180.25512 * 29 23 22 44 44 H 1.09001 * 113.60927 * 270.81521 * 30 13 12 45 45 H 1.08998 * 113.61852 * 139.91019 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0561 -3.5693 -0.4292 12 6 2.0326 -4.3827 1.3560 13 6 1.8607 -5.6902 0.5615 14 1 2.8052 -6.1597 0.2861 15 6 0.8725 -6.6710 1.1957 16 7 1.5762 -7.5159 2.1639 17 6 0.9021 -8.4605 2.8493 18 8 -0.2898 -8.6111 2.6646 19 6 1.6122 -9.3127 3.8268 20 6 2.9811 -9.1414 4.0413 21 6 3.6411 -9.9378 4.9545 22 6 2.9512 -10.9070 5.6591 23 6 1.5891 -11.0852 5.4527 24 7 0.8943 -12.0704 6.1698 25 6 1.4085 -12.8501 7.1598 26 6 0.3974 -13.6523 7.5678 27 7 -0.6667 -13.3326 6.8228 28 7 -0.3420 -12.3911 6.0090 29 6 0.9158 -10.2866 4.5420 30 6 1.2470 -4.8365 -0.5607 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.9745 -4.3227 1.9013 34 1 1.1693 -4.1288 1.9711 35 1 0.0844 -6.1153 1.7038 36 1 0.4329 -7.2971 0.4192 37 1 2.5274 -7.3959 2.3111 38 1 3.5235 -8.3858 3.4923 39 1 4.6999 -9.8037 5.1195 40 1 3.4731 -11.5277 6.3722 41 1 2.4185 -12.8323 7.5422 42 1 0.4412 -14.4032 8.3428 43 1 -0.1440 -10.4211 4.3833 44 1 0.1685 -4.7069 -0.4704 45 1 1.5554 -5.1422 -1.5604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086285871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 133.120522 kcal Electronic energy + Delta-G solvation = -27309.622755 eV Core-core repulsion = 23330.775701 eV Total energy + Delta-G solvation = -3978.847054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.89410 -40.67930 -39.20584 -38.35665 -35.25923 -34.79149 -33.34951 -32.29650 -31.34187 -30.70099 -30.15137 -27.55982 -25.15862 -24.97825 -24.67207 -23.78828 -22.76860 -21.88302 -21.14120 -20.77602 -19.49210 -18.90432 -17.29686 -17.09444 -16.96705 -16.87995 -16.45704 -15.61311 -15.56714 -15.31428 -14.90946 -14.73236 -14.69421 -14.39365 -14.01292 -13.75371 -13.60410 -13.20474 -12.95786 -12.70656 -12.46758 -11.97887 -11.91784 -11.87299 -11.54180 -11.45892 -11.42552 -11.27774 -10.85443 -10.59915 -10.39254 -10.21437 -10.04115 -9.96489 -9.87006 -9.76657 -9.54388 -9.28839 -9.14077 -8.89520 -6.99415 -5.80657 -3.09933 -0.10263 0.33066 1.36646 1.68929 2.08501 2.44765 2.86756 3.26560 3.40978 3.45466 3.46876 3.77533 3.93285 4.08390 4.34402 4.35694 4.37278 4.55607 4.56962 4.68693 4.71514 4.89323 4.94012 4.98918 5.15754 5.19638 5.42243 5.43853 5.47848 5.52819 5.57793 5.66632 5.75477 5.78770 5.86105 5.88343 6.05309 6.14548 6.24766 6.26221 6.30231 6.36403 6.53728 6.76970 7.06690 7.25909 7.65665 7.94999 7.97017 8.37766 9.48737 10.06855 10.40843 11.41516 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.001613 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.790242 B =17358.833206 C =17556.241572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.553 3.447 18 O -0.528 6.528 19 C -0.108 4.108 20 C -0.077 4.077 21 C -0.102 4.102 22 C -0.096 4.096 23 C 0.112 3.888 24 N -0.242 5.242 25 C -0.051 4.051 26 C -0.043 4.043 27 N -0.262 5.262 28 N -0.073 5.073 29 C -0.043 4.043 30 C -0.141 4.141 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.157 0.843 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.275 -27.345 13.189 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.367 5.367 17 C 0.339 3.661 18 O -0.405 6.405 19 C -0.112 4.112 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.117 4.117 23 C 0.021 3.979 24 N -0.030 5.030 25 C -0.198 4.198 26 C -0.199 4.199 27 N -0.128 5.128 28 N -0.051 5.051 29 C -0.064 4.064 30 C -0.181 4.181 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.212 0.788 42 H 0.213 0.787 43 H 0.175 0.825 44 H 0.100 0.900 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.158 -27.004 12.254 31.036 hybrid contribution 1.749 0.735 0.838 2.074 sum 10.907 -26.269 13.092 31.312 Atomic orbital electron populations 1.69652 1.05140 1.25903 1.57231 1.24772 0.95519 0.97796 1.02742 0.86264 0.78538 0.83516 0.77826 1.21664 1.21262 1.21229 1.19249 0.91029 0.84259 1.43239 0.91156 1.42403 1.05766 0.99856 1.87051 1.21514 0.95246 0.85101 0.92793 0.90748 1.23997 1.01314 0.94742 1.00192 1.22683 0.98400 0.94442 0.99187 0.89346 1.21529 0.95142 0.91804 0.90707 1.45953 1.12905 1.35720 1.42143 1.18061 0.86834 0.80418 0.80827 1.90832 1.14522 1.69327 1.65853 1.19920 0.94020 0.98121 0.99105 1.21581 0.93110 0.98248 0.96665 1.21000 1.00806 0.94620 0.95645 1.21087 0.91021 0.99220 1.00339 1.17500 0.91335 0.91833 0.97222 1.44773 1.08912 1.24884 1.24436 1.23852 1.03123 0.97433 0.95424 1.23707 0.89326 1.03384 1.03466 1.75177 1.25266 1.07763 1.04589 1.78492 0.94566 1.12042 1.20019 1.21072 1.01957 0.91584 0.91801 1.23429 1.00999 0.96982 0.96700 0.93367 0.78041 0.92766 0.90283 0.90815 0.91356 0.76506 0.84222 0.83576 0.84231 0.78807 0.78675 0.82524 0.90016 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.41 5.41 -52.64 -0.28 -17.70 16 10 C 0.17 3.07 4.47 -67.12 -0.30 2.77 16 11 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 12 C -0.16 -2.50 7.45 -25.82 -0.19 -2.69 16 13 C -0.13 -1.56 3.75 -89.72 -0.34 -1.90 16 14 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 15 C 0.13 1.59 5.52 -4.04 -0.02 1.57 16 16 N -0.72 -7.26 5.51 -61.25 -0.34 -7.60 16 17 C 0.55 6.65 7.77 -12.33 -0.10 6.56 16 18 O -0.53 -8.60 16.35 5.32 0.09 -8.51 16 19 C -0.11 -0.99 5.87 -104.99 -0.62 -1.60 16 20 C -0.08 -0.43 9.54 -39.16 -0.37 -0.80 16 21 C -0.10 -0.40 10.02 -39.67 -0.40 -0.80 16 22 C -0.10 -0.45 9.45 -39.32 -0.37 -0.83 16 23 C 0.11 0.92 6.67 -83.62 -0.56 0.36 16 24 N -0.24 -2.24 3.56 -10.50 -0.04 -2.28 16 25 C -0.05 -0.31 10.91 -16.68 -0.18 -0.49 16 26 C -0.04 -0.31 12.05 -17.73 -0.21 -0.53 16 27 N -0.26 -3.05 12.39 30.24 0.37 -2.68 16 28 N -0.07 -0.90 12.42 60.35 0.75 -0.15 16 29 C -0.04 -0.44 9.16 -39.00 -0.36 -0.79 16 30 C -0.14 -2.13 7.39 -25.92 -0.19 -2.33 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.39 10.08 7.91 -40.82 -0.32 9.76 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.38 7.91 -51.93 -0.41 0.97 16 35 H 0.07 1.04 7.86 -51.93 -0.41 0.64 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 2.83 6.50 -40.82 -0.27 2.56 16 38 H 0.14 0.46 6.40 -52.48 -0.34 0.12 16 39 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 40 H 0.14 0.23 6.77 -52.49 -0.36 -0.13 16 41 H 0.19 0.26 7.12 -52.48 -0.37 -0.11 16 42 H 0.20 0.65 8.06 -52.48 -0.42 0.22 16 43 H 0.16 1.90 7.29 -52.49 -0.38 1.52 16 44 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -36.08 383.82 -8.19 -44.27 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.78 Total: 7.82 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -4.45 Total: -8.81 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 1.19 Total: -57.57 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.08 -8.19 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086285871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.390 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds