Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48502 * 109.46981 * 239.99805 * 3 2 1 5 5 H 1.48502 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46947 * 120.00400 * 3 2 1 7 7 C 1.38809 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00187 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00177 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84975 * 336.19915 * 10 9 7 12 12 C 1.53955 * 113.66429 * 107.43887 * 10 9 7 13 13 C 1.53788 * 87.02037 * 139.93401 * 12 10 9 14 14 H 1.08996 * 113.61284 * 89.22848 * 13 12 10 15 15 C 1.52997 * 113.61294 * 220.04790 * 13 12 10 16 16 N 1.46494 * 109.47258 * 274.13046 * 15 13 12 17 17 C 1.34776 * 120.00443 * 180.02562 * 16 15 13 18 18 O 1.21582 * 119.99261 * 0.02562 * 17 16 15 19 19 C 1.47615 * 120.00335 * 180.02562 * 17 16 15 20 20 C 1.39623 * 120.19126 * 353.80311 * 19 17 16 21 21 C 1.37864 * 119.92134 * 180.27756 * 20 19 17 22 22 C 1.38508 * 120.29848 * 359.72195 * 21 20 19 23 23 C 1.38105 * 120.38386 * 0.02562 * 22 21 20 24 24 C 1.38726 * 120.07479 * 0.02562 * 23 22 21 25 25 N 1.39806 * 120.14899 * 179.97438 * 24 23 22 26 26 C 1.36328 * 126.86454 * 301.77434 * 25 24 23 27 27 C 1.34960 * 106.77591 * 180.26147 * 26 25 24 28 28 N 1.33380 * 109.01810 * 0.02562 * 27 26 25 29 29 N 1.28761 * 109.92662 * 359.97438 * 28 27 26 30 30 C 1.53782 * 113.61322 * 204.99768 * 10 9 7 31 31 H 0.96999 * 119.99915 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99860 * 359.97438 * 9 7 2 33 33 H 1.09002 * 113.61783 * 25.41675 * 12 10 9 34 34 H 1.08999 * 113.66951 * 254.45780 * 12 10 9 35 35 H 1.09001 * 109.46623 * 154.13535 * 15 13 12 36 36 H 1.08999 * 109.47670 * 34.13592 * 15 13 12 37 37 H 0.97001 * 119.99869 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.04224 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.85365 * 179.69964 * 21 20 19 40 40 H 1.07998 * 119.81091 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.96076 * 179.97438 * 23 22 21 42 42 H 1.07997 * 126.61724 * 0.26695 * 26 25 24 43 43 H 1.08007 * 125.49522 * 180.02562 * 27 26 25 44 44 H 1.08998 * 113.61343 * 105.47320 * 30 10 9 45 45 H 1.08994 * 113.69078 * 334.57869 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0653 -3.5637 -0.4078 12 6 2.0021 -4.4039 1.3433 13 6 1.8484 -5.6979 0.5267 14 1 2.7980 -6.1648 0.2655 15 6 0.8458 -6.6857 1.1266 16 7 1.5195 -7.5198 2.1247 17 6 0.8286 -8.4681 2.7878 18 8 -0.3539 -8.6316 2.5571 19 6 1.5074 -9.3083 3.7940 20 6 2.8892 -9.2139 3.9706 21 6 3.5183 -10.0053 4.9080 22 6 2.7849 -10.8906 5.6805 23 6 1.4168 -10.9904 5.5197 24 6 0.7679 -10.2023 4.5804 25 7 -0.6169 -10.3025 4.4161 26 6 -1.3230 -11.4224 4.0911 27 6 -2.6220 -11.0608 4.0336 28 7 -2.7240 -9.7604 4.3122 29 7 -1.5571 -9.2690 4.5462 30 6 1.2597 -4.8285 -0.5970 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 1.1252 -4.1591 1.9427 34 1 2.9314 -4.3536 1.9108 35 1 0.4426 -7.3190 0.3363 36 1 0.0333 -6.1356 1.6014 37 1 2.4631 -7.3895 2.3085 38 1 3.4653 -8.5253 3.3703 39 1 4.5878 -9.9348 5.0404 40 1 3.2857 -11.5065 6.4127 41 1 0.8517 -11.6833 6.1254 42 1 -0.9207 -12.4088 3.9140 43 1 -3.4463 -11.7184 3.7997 44 1 1.5904 -5.1205 -1.5937 45 1 0.1793 -4.7011 -0.5300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086285910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 143.495132 kcal Electronic energy + Delta-G solvation = -28311.616336 eV Core-core repulsion = 24333.219159 eV Total energy + Delta-G solvation = -3978.397177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23123 -40.47145 -39.06220 -38.22337 -35.09867 -34.38346 -33.33817 -32.01798 -30.89502 -30.24612 -29.93196 -27.45408 -25.10944 -24.77257 -24.16204 -23.73116 -21.99717 -21.85019 -21.04230 -20.72432 -19.21181 -18.80844 -17.77888 -17.02797 -16.65076 -15.83177 -15.76880 -15.51222 -15.37518 -14.97006 -14.77631 -14.71244 -14.61841 -14.32020 -13.85870 -13.58503 -13.50356 -13.07174 -12.85649 -12.69402 -12.17041 -11.91155 -11.84075 -11.80521 -11.40875 -11.26768 -11.22953 -10.83408 -10.78376 -10.53913 -10.29114 -10.17272 -9.95912 -9.83541 -9.70914 -9.54742 -9.49716 -9.05376 -9.03681 -8.86025 -6.95968 -5.77214 -3.06449 0.09413 0.45321 1.35761 2.01001 2.49009 2.58040 2.93692 3.27041 3.43509 3.47760 3.49329 4.06417 4.17543 4.28971 4.35276 4.58114 4.58804 4.65260 4.81459 4.86892 4.95325 4.97142 5.02223 5.13604 5.20918 5.27932 5.46595 5.48334 5.51565 5.62242 5.70839 5.80419 5.85183 5.92216 5.94953 6.06079 6.08881 6.22355 6.29612 6.34993 6.41860 6.58060 6.60373 6.81490 7.10919 7.34325 7.68636 8.05836 8.14564 8.41176 9.51983 10.10349 10.44452 11.45055 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.002132 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.283918 B =13131.590391 C =14039.188889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.087 0.913 15 C 0.134 3.866 16 N -0.717 5.717 17 C 0.547 3.453 18 O -0.514 6.514 19 C -0.113 4.113 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.083 4.083 23 C -0.116 4.116 24 C 0.182 3.818 25 N -0.323 5.323 26 C 0.020 3.980 27 C -0.075 4.075 28 N -0.239 5.239 29 N -0.011 5.011 30 C -0.142 4.142 31 H 0.257 0.743 32 H 0.386 0.614 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.188 0.812 43 H 0.184 0.816 44 H 0.061 0.939 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -30.394 10.594 33.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.093 0.907 12 C -0.203 4.203 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.011 3.989 16 N -0.368 5.368 17 C 0.332 3.668 18 O -0.390 6.390 19 C -0.118 4.118 20 C -0.094 4.094 21 C -0.131 4.131 22 C -0.101 4.101 23 C -0.137 4.137 24 C 0.090 3.910 25 N -0.107 5.107 26 C -0.129 4.129 27 C -0.229 4.229 28 N -0.110 5.110 29 N 0.011 4.989 30 C -0.182 4.182 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.205 0.795 43 H 0.201 0.799 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.628 -28.802 10.673 31.423 hybrid contribution 0.918 -0.180 -0.157 0.948 sum 7.546 -28.982 10.516 31.741 Atomic orbital electron populations 1.69653 1.05142 1.25904 1.57244 1.24779 0.95523 0.97805 1.02791 0.86263 0.78532 0.83529 0.77819 1.21237 1.21662 1.21252 1.19247 0.91005 0.84255 1.43186 0.91170 1.42410 1.05792 0.99864 1.86959 1.21538 0.95263 0.85058 0.92689 0.90687 1.23990 1.01378 0.94898 0.99993 1.22647 0.98284 0.94419 0.99341 0.89436 1.21467 0.95501 0.91886 0.89998 1.45917 1.13643 1.35939 1.41346 1.17998 0.86705 0.80743 0.81313 1.90880 1.14532 1.68652 1.64925 1.20126 0.94069 0.99430 0.98194 1.21358 0.92280 0.98220 0.97531 1.21309 1.01014 0.95416 0.95328 1.21256 0.92758 0.97622 0.98505 1.21146 0.95447 1.00187 0.96910 1.17286 0.79099 0.98238 0.96422 1.47598 1.05497 1.08442 1.49164 1.23427 0.92853 0.93218 1.03449 1.23130 0.96308 0.93113 1.10328 1.74320 1.15908 1.09122 1.11618 1.82237 0.90175 1.07953 1.18552 1.23443 1.01118 0.96977 0.96614 0.93355 0.78027 0.90279 0.92788 0.91713 0.90910 0.76706 0.84261 0.84240 0.84187 0.84363 0.79465 0.79853 0.91986 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.84 9.97 -15.06 -0.15 -6.99 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.96 5.40 -52.55 -0.28 -18.24 16 10 C 0.17 3.23 4.48 -67.02 -0.30 2.93 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.16 -2.68 7.45 -25.82 -0.19 -2.87 16 13 C -0.13 -1.70 3.75 -89.80 -0.34 -2.04 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.83 5.50 -4.05 -0.02 1.81 16 16 N -0.72 -8.36 5.50 -61.33 -0.34 -8.70 16 17 C 0.55 7.43 7.72 -12.43 -0.10 7.33 16 18 O -0.51 -9.08 13.24 5.29 0.07 -9.01 16 19 C -0.11 -1.17 5.89 -104.83 -0.62 -1.79 16 20 C -0.07 -0.49 9.52 -39.20 -0.37 -0.87 16 21 C -0.11 -0.51 10.03 -39.62 -0.40 -0.91 16 22 C -0.08 -0.36 10.03 -39.53 -0.40 -0.75 16 23 C -0.12 -0.75 9.82 -39.45 -0.39 -1.13 16 24 C 0.18 1.85 6.20 -83.32 -0.52 1.33 16 25 N -0.32 -4.00 2.60 -10.32 -0.03 -4.03 16 26 C 0.02 0.19 11.47 -16.72 -0.19 -0.01 16 27 C -0.07 -0.82 11.86 -18.04 -0.21 -1.04 16 28 N -0.24 -3.72 12.33 30.09 0.37 -3.35 16 29 N -0.01 -0.17 11.35 60.35 0.68 0.51 16 30 C -0.14 -2.28 7.40 -25.91 -0.19 -2.47 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.39 10.41 7.92 -40.82 -0.32 10.09 16 33 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.17 7.87 -51.93 -0.41 0.77 16 37 H 0.40 3.44 6.54 -40.82 -0.27 3.17 16 38 H 0.14 0.62 6.45 -52.49 -0.34 0.28 16 39 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 40 H 0.14 0.21 8.06 -52.49 -0.42 -0.22 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.19 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.18 1.31 8.06 -52.48 -0.42 0.88 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -37.55 382.81 -8.47 -46.02 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.94 Total: 9.30 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -4.48 Total: -7.92 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 1.13 Total: -61.59 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.55 -8.47 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086285910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.514 kcal (2) G-P(sol) polarization free energy of solvation -37.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds