Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48505 * 109.47013 * 269.99545 * 3 2 1 5 5 H 1.48499 * 109.47556 * 29.99529 * 3 2 1 6 6 H 1.48511 * 109.47329 * 149.99609 * 3 2 1 7 7 C 1.38821 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99786 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99702 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99560 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84894 * 336.18794 * 10 9 7 12 12 C 1.53776 * 113.69429 * 107.46085 * 10 9 7 13 13 C 1.53781 * 87.08360 * 89.12288 * 12 10 9 14 14 H 1.08995 * 113.69109 * 270.87805 * 13 12 10 15 15 C 1.53004 * 113.61092 * 139.97839 * 13 12 10 16 16 N 1.46500 * 109.46783 * 87.51142 * 15 13 12 17 17 C 1.34779 * 119.99649 * 180.02562 * 16 15 13 18 18 O 1.21605 * 120.00173 * 359.97438 * 17 16 15 19 19 C 1.47320 * 119.99570 * 179.97438 * 17 16 15 20 20 C 1.37911 * 126.80882 * 0.02562 * 19 17 16 21 21 N 1.34198 * 107.89831 * 179.97438 * 20 19 17 22 22 H 0.96993 * 125.16635 * 180.26740 * 21 20 19 23 23 N 1.39775 * 109.66504 * 0.02562 * 21 20 19 24 24 C 1.31385 * 109.07116 * 0.02562 * 23 21 20 25 25 C 1.48235 * 126.50999 * 180.02562 * 24 23 21 26 26 C 1.39377 * 119.73556 * 334.70137 * 25 24 23 27 27 C 1.38386 * 119.06594 * 179.79439 * 26 25 24 28 28 C 1.38795 * 118.51734 * 0.47168 * 27 26 25 29 29 C 1.38254 * 119.37078 * 359.74825 * 28 27 26 30 30 N 1.31757 * 120.89906 * 0.02562 * 29 28 27 31 31 C 1.53778 * 113.61185 * 204.99590 * 10 9 7 32 32 H 0.96993 * 120.00268 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00436 * 359.97438 * 9 7 2 34 34 H 1.09003 * 113.61098 * 334.57420 * 12 10 9 35 35 H 1.08997 * 113.61638 * 203.67419 * 12 10 9 36 36 H 1.08997 * 109.47322 * 327.50761 * 15 13 12 37 37 H 1.09004 * 109.46776 * 207.50375 * 15 13 12 38 38 H 0.96999 * 120.00104 * 359.97438 * 16 15 13 39 39 H 1.08003 * 126.04833 * 359.97438 * 20 19 17 40 40 H 1.08001 * 120.46502 * 359.97438 * 26 25 24 41 41 H 1.08002 * 120.74793 * 180.21913 * 27 26 25 42 42 H 1.07995 * 120.31762 * 179.72346 * 28 27 26 43 43 H 1.08000 * 119.55369 * 179.97438 * 29 28 27 44 44 H 1.09002 * 113.61293 * 156.24737 * 31 10 9 45 45 H 1.09005 * 113.62006 * 25.34811 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5278 -3.2969 0.4062 12 6 4.7876 -2.7944 -1.3420 13 6 6.0134 -2.0256 -0.8212 14 1 5.9900 -0.9595 -1.0469 15 6 7.3475 -2.6807 -1.1844 16 7 7.7835 -2.2042 -2.4993 17 6 8.9405 -2.6497 -3.0279 18 8 9.6227 -3.4470 -2.4131 19 6 9.3787 -2.1709 -4.3504 20 6 8.7199 -1.2733 -5.1641 21 7 9.4541 -1.1080 -6.2752 22 1 9.2234 -0.5256 -7.0157 23 7 10.6045 -1.8983 -6.2007 24 6 10.6014 -2.5549 -5.0626 25 6 11.6380 -3.5022 -4.5881 26 6 12.4380 -4.1716 -5.5125 27 6 13.4044 -5.0497 -5.0540 28 6 13.5330 -5.2376 -3.6849 29 6 12.7025 -4.5440 -2.8243 30 7 11.7932 -3.7101 -3.2868 31 6 5.5259 -2.3658 0.5970 32 1 -0.4850 0.8400 -0.0004 33 1 3.8647 -0.3620 0.0007 34 1 4.3065 -2.3210 -2.1979 35 1 4.9713 -3.8581 -1.4933 36 1 7.2248 -3.7634 -1.2127 37 1 8.0961 -2.4192 -0.4366 38 1 7.2392 -1.5685 -2.9898 39 1 7.7795 -0.7891 -4.9458 40 1 12.3074 -4.0052 -6.5716 41 1 14.0415 -5.5801 -5.7462 42 1 14.2745 -5.9193 -3.2955 43 1 12.7998 -4.6883 -1.7584 44 1 5.9114 -3.3124 0.9759 45 1 5.6410 -1.5464 1.3066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086384308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 122.680599 kcal Electronic energy + Delta-G solvation = -28083.509777 eV Core-core repulsion = 24104.210013 eV Total energy + Delta-G solvation = -3979.299763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50646 -40.00004 -39.35721 -38.30668 -34.57088 -33.34339 -33.12405 -32.59953 -31.06650 -30.41360 -30.32031 -27.36272 -25.15341 -24.53886 -23.89940 -23.60625 -22.77640 -21.69073 -20.80978 -20.00323 -18.97948 -18.30391 -17.64224 -17.05340 -16.47357 -16.23320 -15.86468 -15.70823 -15.48026 -14.96193 -14.69473 -14.39651 -14.28749 -13.95489 -13.88219 -13.62346 -13.41682 -13.30290 -12.87470 -12.76401 -12.45912 -12.05720 -12.01245 -11.51329 -11.45068 -11.33653 -10.93835 -10.62387 -10.50664 -10.29492 -10.10468 -10.01055 -9.76724 -9.66181 -9.51211 -9.26653 -9.25750 -8.94205 -8.88910 -8.73190 -7.32028 -5.81907 -3.17868 0.50253 1.11284 1.24535 2.00319 2.23840 3.29921 3.32033 3.34759 3.40814 3.48722 3.71740 3.77035 4.18649 4.51920 4.53506 4.61100 4.69020 4.83953 4.88909 4.93638 5.00422 5.04587 5.10085 5.24364 5.27984 5.38572 5.47670 5.51595 5.56725 5.74405 5.77312 5.85927 5.95598 5.97317 6.02874 6.15829 6.26171 6.43449 6.46757 6.57037 6.63565 6.67812 6.79535 6.90344 7.03684 7.68372 7.88472 7.96519 8.37903 8.48969 9.15885 9.88112 10.07648 11.36249 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.002156 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.248904 B =12983.013625 C =13996.242141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.123 4.123 14 H 0.088 0.912 15 C 0.137 3.863 16 N -0.730 5.730 17 C 0.580 3.420 18 O -0.503 6.503 19 C -0.254 4.254 20 C 0.101 3.899 21 N -0.460 5.460 22 H 0.446 0.554 23 N -0.276 5.276 24 C 0.171 3.829 25 C 0.186 3.814 26 C -0.142 4.142 27 C -0.086 4.086 28 C -0.166 4.166 29 C 0.102 3.898 30 N -0.408 5.408 31 C -0.149 4.149 32 H 0.260 0.740 33 H 0.362 0.638 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.191 0.809 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.082 0.918 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.878 -6.613 -12.778 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.060 3.940 11 H 0.088 0.912 12 C -0.206 4.206 13 C -0.141 4.141 14 H 0.106 0.894 15 C 0.014 3.986 16 N -0.382 5.382 17 C 0.365 3.635 18 O -0.376 6.376 19 C -0.269 4.269 20 C -0.049 4.049 21 N -0.167 5.167 22 H 0.291 0.709 23 N -0.098 5.098 24 C 0.002 3.998 25 C 0.047 3.953 26 C -0.163 4.163 27 C -0.111 4.111 28 C -0.186 4.186 29 C -0.057 4.057 30 N -0.116 5.116 31 C -0.188 4.188 32 H 0.070 0.930 33 H 0.195 0.805 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.208 0.792 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.100 0.900 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 27.156 -6.579 -12.770 30.721 hybrid contribution 0.129 1.415 -0.662 1.567 sum 27.285 -5.164 -13.432 30.847 Atomic orbital electron populations 1.69694 1.05092 1.25870 1.57306 1.24688 0.95256 0.97211 1.01994 0.86561 0.79285 0.85035 0.77706 1.21138 1.21681 1.20277 1.19122 0.80446 0.94822 1.43126 0.89034 1.42511 1.03918 1.01643 1.88942 1.21012 0.90155 0.89817 0.93017 0.91167 1.23842 0.96530 0.98890 1.01369 1.22741 0.92890 0.99923 0.98578 0.89386 1.21372 0.95301 0.98669 0.83259 1.45893 1.23103 1.48111 1.21138 1.17108 0.80805 0.81618 0.83959 1.90871 1.53029 1.32845 1.60881 1.21415 0.98501 1.07750 0.99271 1.23135 0.97456 0.97083 0.87222 1.45914 1.16617 1.36590 1.17558 0.70933 1.77259 1.03771 1.09402 1.19412 1.21301 0.92963 0.94928 0.90624 1.18358 0.93061 0.94298 0.89552 1.22071 0.96053 0.97252 1.00937 1.21479 0.97026 0.96758 0.95886 1.22316 1.01039 1.00946 0.94315 1.22827 0.90209 0.92032 1.00654 1.67911 1.15210 1.14852 1.13668 1.23456 0.98680 1.01580 0.95112 0.93003 0.80538 0.91442 0.90924 0.91599 0.91872 0.77287 0.79190 0.84571 0.84640 0.84706 0.82445 0.89992 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.47 27.74 -169.99 -4.71 16.75 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.74 10.45 -15.06 -0.16 -6.90 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.73 -16.57 5.12 -52.64 -0.27 -16.84 16 10 C 0.17 3.14 4.56 -67.12 -0.31 2.83 16 11 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 12 C -0.17 -2.54 7.43 -25.92 -0.19 -2.73 16 13 C -0.12 -1.66 3.63 -89.80 -0.33 -1.99 16 14 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.14 1.74 5.51 -4.04 -0.02 1.72 16 16 N -0.73 -8.56 5.55 -61.42 -0.34 -8.90 16 17 C 0.58 7.97 7.81 -12.57 -0.10 7.88 16 18 O -0.50 -8.46 13.67 5.27 0.07 -8.39 16 19 C -0.25 -3.01 6.31 -102.95 -0.65 -3.66 16 20 C 0.10 0.78 11.50 -16.64 -0.19 0.59 16 21 N -0.46 -3.37 7.20 30.81 0.22 -3.15 16 22 H 0.45 1.57 8.96 -182.85 -1.64 -0.07 16 23 N -0.28 -2.97 12.53 34.57 0.43 -2.54 16 24 C 0.17 2.14 7.11 -80.57 -0.57 1.57 16 25 C 0.19 2.36 6.63 -82.96 -0.55 1.81 16 26 C -0.14 -1.40 9.75 -39.10 -0.38 -1.78 16 27 C -0.09 -0.67 10.16 -39.32 -0.40 -1.06 16 28 C -0.17 -1.30 10.11 -39.37 -0.40 -1.70 16 29 C 0.10 1.06 11.17 -17.58 -0.20 0.87 16 30 N -0.41 -5.58 7.06 -9.79 -0.07 -5.65 16 31 C -0.15 -2.20 7.39 -25.92 -0.19 -2.39 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.36 8.03 5.76 -40.82 -0.24 7.80 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 36 H 0.07 0.88 7.84 -51.93 -0.41 0.48 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.39 3.69 7.43 -40.82 -0.30 3.39 16 39 H 0.19 0.75 7.48 -52.48 -0.39 0.35 16 40 H 0.14 1.14 8.04 -52.49 -0.42 0.72 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -36.67 381.32 -10.07 -46.75 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.20 Total: 9.12 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -4.73 Total: -4.91 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: 0.75 Total: -65.07 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.67 -10.07 -46.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086384308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.426 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds