Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48496 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47271 * 300.00071 * 3 2 1 6 6 H 1.48499 * 109.47059 * 59.99880 * 3 2 1 7 7 C 1.38810 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85132 * 25.32863 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52601 * 10 9 7 13 13 C 1.53785 * 87.08277 * 89.19510 * 12 10 9 14 14 H 1.08999 * 113.61409 * 270.80258 * 13 12 10 15 15 C 1.52995 * 113.61328 * 139.98018 * 13 12 10 16 16 N 1.46500 * 109.47274 * 175.00103 * 15 13 12 17 17 C 1.34777 * 120.00199 * 180.02562 * 16 15 13 18 18 O 1.21571 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.47670 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.39700 * 120.07772 * 359.72424 * 19 17 16 21 21 C 1.37736 * 119.91645 * 179.74079 * 20 19 17 22 22 C 1.39041 * 120.08194 * 0.51482 * 21 20 19 23 23 N 1.39864 * 119.92519 * 179.73973 * 22 21 20 24 24 C 1.34805 * 126.84302 * 0.02562 * 23 22 21 25 25 N 1.30825 * 108.02123 * 179.97438 * 24 23 22 26 26 C 1.33292 * 109.84426 * 359.97438 * 25 24 23 27 27 N 1.30728 * 109.01520 * 359.71518 * 26 25 24 28 28 C 1.39048 * 120.15406 * 359.76346 * 22 21 20 29 29 C 1.37728 * 120.07894 * 359.97438 * 28 22 21 30 30 C 1.53776 * 87.07661 * 25.43397 * 13 12 10 31 31 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00212 * 359.97438 * 9 7 2 33 33 H 1.08993 * 113.62030 * 203.74957 * 12 10 9 34 34 H 1.09006 * 113.61109 * 334.56882 * 12 10 9 35 35 H 1.09000 * 109.47057 * 295.00615 * 15 13 12 36 36 H 1.09003 * 109.46758 * 55.00377 * 15 13 12 37 37 H 0.97003 * 119.99623 * 0.02562 * 16 15 13 38 38 H 1.07999 * 120.04535 * 359.97438 * 20 19 17 39 39 H 1.08005 * 119.95768 * 180.25253 * 21 20 19 40 40 H 1.08000 * 125.99103 * 0.03223 * 24 23 22 41 41 H 1.08000 * 125.49240 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.95928 * 179.97438 * 28 22 21 43 43 H 1.08000 * 120.03745 * 179.97438 * 29 28 22 44 44 H 1.09003 * 113.61687 * 220.01420 * 30 13 12 45 45 H 1.09009 * 113.61565 * 89.11769 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0558 -3.5691 0.4321 12 6 1.2466 -4.8363 0.5628 13 6 0.7425 -5.0696 -0.8712 14 1 -0.1636 -4.5133 -1.1114 15 6 0.6519 -6.5476 -1.2561 16 7 0.0530 -6.6697 -2.5875 17 6 -0.1275 -7.8874 -3.1361 18 8 0.2061 -8.8846 -2.5260 19 6 -0.7307 -8.0104 -4.4784 20 6 -1.1200 -6.8659 -5.1786 21 6 -1.6773 -6.9842 -6.4326 22 6 -1.8624 -8.2412 -6.9973 23 7 -2.4337 -8.3578 -8.2686 24 6 -2.8512 -7.3515 -9.0625 25 7 -3.3223 -7.8747 -10.1652 26 6 -3.2231 -9.2030 -10.1141 27 7 -2.6796 -9.5461 -8.9758 28 6 -1.4814 -9.3828 -6.3008 29 6 -0.9186 -9.2718 -5.0487 30 6 2.0332 -4.3858 -1.3521 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 1.8643 -5.6483 0.9461 34 1 0.4634 -4.5355 1.2588 35 1 1.6514 -6.9824 -1.2659 36 1 0.0334 -7.0749 -0.5298 37 1 -0.2135 -5.8740 -3.0742 38 1 -0.9807 -5.8894 -4.7388 39 1 -1.9747 -6.0996 -6.9762 40 1 -2.8042 -6.2980 -8.8295 41 1 -3.5363 -9.8855 -10.8904 42 1 -1.6271 -10.3577 -6.7422 43 1 -0.6233 -10.1589 -4.5081 44 1 1.8843 -3.7213 -2.2032 45 1 2.8662 -5.0748 -1.4924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086392945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 122.027112 kcal Electronic energy + Delta-G solvation = -27368.573371 eV Core-core repulsion = 23389.245271 eV Total energy + Delta-G solvation = -3979.328101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84556 -40.53972 -39.13155 -38.36353 -34.87832 -34.65184 -33.29236 -32.20323 -31.44498 -30.56382 -29.94880 -27.45774 -25.15302 -25.02628 -23.96301 -23.71336 -22.48643 -21.86483 -21.53101 -20.68174 -19.10884 -18.60126 -17.90002 -17.24890 -16.52537 -16.37874 -16.09456 -15.55240 -15.33502 -14.96809 -14.93202 -14.73395 -14.41062 -14.22408 -14.05529 -13.73355 -13.60496 -13.15477 -13.09000 -12.95593 -12.76097 -12.34227 -11.97951 -11.62109 -11.48484 -11.29512 -11.09719 -10.90749 -10.66757 -10.56198 -10.43007 -10.32979 -10.17331 -9.91692 -9.75248 -9.67188 -9.55246 -9.18600 -8.95044 -8.87294 -7.05838 -5.86542 -3.15633 -0.10082 0.73427 1.26895 1.61305 2.36032 2.57831 2.98936 3.37364 3.40070 3.43795 3.45630 3.71002 3.81188 4.15537 4.30338 4.35602 4.46154 4.50764 4.68444 4.87882 4.93914 4.98474 5.00615 5.16231 5.35990 5.39669 5.46292 5.50700 5.54323 5.63354 5.73869 5.79152 5.80652 5.85200 5.89780 6.02964 6.05023 6.15103 6.28982 6.31079 6.41234 6.52368 6.67401 6.82875 6.97666 7.34644 7.43709 7.64496 8.01962 8.32682 9.43608 10.00721 10.34879 11.35874 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.001905 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.468785 B =14694.925271 C =16550.712724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.717 5.717 17 C 0.555 3.445 18 O -0.539 6.539 19 C -0.133 4.133 20 C -0.058 4.058 21 C -0.139 4.139 22 C 0.169 3.831 23 N -0.332 5.332 24 C 0.266 3.734 25 N -0.536 5.536 26 C 0.208 3.792 27 N -0.313 5.313 28 C -0.120 4.120 29 C -0.037 4.037 30 C -0.169 4.169 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.402 0.598 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.226 0.774 41 H 0.224 0.776 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.066 0.934 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 -18.268 -15.623 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.054 3.946 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.368 5.368 17 C 0.341 3.659 18 O -0.417 6.417 19 C -0.137 4.137 20 C -0.077 4.077 21 C -0.160 4.160 22 C 0.076 3.924 23 N -0.116 5.116 24 C -0.030 4.030 25 N -0.262 5.262 26 C -0.094 4.094 27 N -0.138 5.138 28 C -0.140 4.140 29 C -0.056 4.056 30 C -0.210 4.210 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.242 0.758 41 H 0.241 0.759 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.857 -19.359 -15.230 25.106 hybrid contribution -0.093 1.536 -0.305 1.569 sum -4.950 -17.823 -15.535 24.155 Atomic orbital electron populations 1.69665 1.05132 1.25702 1.57541 1.24764 0.95550 0.97808 1.02769 0.86101 0.78832 0.83944 0.77211 1.20487 1.21834 1.21818 1.19335 0.91171 0.83943 1.42855 0.90922 1.42171 1.05661 0.99431 1.87177 1.21057 0.95080 0.85606 0.92818 0.92012 1.23427 1.00630 0.99694 0.94912 1.22721 0.99669 0.92853 0.98645 0.88840 1.21548 0.98180 0.97319 0.82230 1.46003 1.62940 1.07904 1.19917 1.18117 0.78747 0.83688 0.85307 1.90786 1.51123 1.36740 1.63095 1.20150 1.03525 0.94314 0.95701 1.21208 0.94786 0.98610 0.93091 1.20743 1.03320 0.95119 0.96803 1.17755 0.97240 0.95334 0.82087 1.47742 1.44914 1.05475 1.13515 1.26334 0.93222 0.97192 0.86215 1.70670 1.24443 1.08664 1.22379 1.26242 0.96066 0.91884 0.95204 1.78158 1.23206 1.04480 1.07951 1.20910 1.00238 0.98084 0.94766 1.21216 0.93562 0.97578 0.93279 1.23893 0.95489 0.99611 1.01971 0.93476 0.78128 0.90392 0.91272 0.91283 0.91536 0.76276 0.83934 0.84181 0.75808 0.75935 0.83739 0.83419 0.91488 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.66 5.31 -52.64 -0.28 -16.94 16 10 C 0.17 3.08 4.55 -67.12 -0.31 2.77 16 11 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 12 C -0.15 -2.20 7.38 -25.92 -0.19 -2.40 16 13 C -0.12 -1.64 3.64 -89.81 -0.33 -1.97 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.13 1.59 5.51 -4.04 -0.02 1.57 16 16 N -0.72 -7.81 5.51 -61.31 -0.34 -8.15 16 17 C 0.55 6.67 7.77 -12.41 -0.10 6.57 16 18 O -0.54 -8.32 16.34 5.30 0.09 -8.23 16 19 C -0.13 -1.26 5.87 -104.95 -0.62 -1.88 16 20 C -0.06 -0.41 9.53 -39.22 -0.37 -0.78 16 21 C -0.14 -0.88 9.45 -39.47 -0.37 -1.25 16 22 C 0.17 1.37 6.70 -83.59 -0.56 0.81 16 23 N -0.33 -2.84 3.81 -11.77 -0.04 -2.89 16 24 C 0.27 1.87 11.97 -90.32 -1.08 0.79 16 25 N -0.54 -4.67 11.19 -15.73 -0.18 -4.85 16 26 C 0.21 1.63 13.03 -91.76 -1.20 0.44 16 27 N -0.31 -2.96 12.03 29.30 0.35 -2.61 16 28 C -0.12 -1.02 9.66 -39.47 -0.38 -1.40 16 29 C -0.04 -0.33 9.58 -39.22 -0.38 -0.71 16 30 C -0.17 -2.60 7.43 -25.92 -0.19 -2.79 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.38 9.60 7.90 -40.82 -0.32 9.27 16 33 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.58 6.50 -40.82 -0.27 3.31 16 38 H 0.14 0.75 6.39 -52.49 -0.34 0.42 16 39 H 0.14 0.47 6.79 -52.48 -0.36 0.11 16 40 H 0.23 0.61 7.08 -52.49 -0.37 0.24 16 41 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 1.18 7.72 -52.48 -0.41 0.77 16 43 H 0.15 1.31 7.64 -52.49 -0.40 0.91 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.95 7.90 -51.92 -0.41 0.54 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -34.18 384.42 -11.02 -45.20 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.78 Total: 9.63 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -6.34 Total: -7.27 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.24 Total: -61.76 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.18 -11.02 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086392945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.230 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds