Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46786 * 300.00150 * 3 2 1 6 6 H 1.48498 * 109.46878 * 60.00021 * 3 2 1 7 7 C 1.38806 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00330 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00172 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.84669 * 23.80168 * 10 9 7 12 12 C 1.53778 * 113.61616 * 155.00038 * 10 9 7 13 13 C 1.53776 * 87.08178 * 89.19961 * 12 10 9 14 14 H 1.09004 * 113.61388 * 270.80107 * 13 12 10 15 15 C 1.52995 * 113.61241 * 139.98443 * 13 12 10 16 16 N 1.46507 * 109.47169 * 175.00255 * 15 13 12 17 17 C 1.34777 * 120.00279 * 179.97438 * 16 15 13 18 18 O 1.21598 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.47503 * 119.99823 * 179.97438 * 17 16 15 20 20 C 1.36620 * 125.76386 * 179.97438 * 19 17 16 21 21 N 1.35084 * 106.79477 * 179.97438 * 20 19 17 22 22 C 1.40225 * 126.61150 * 179.97438 * 21 20 19 23 23 C 1.38829 * 120.07028 * 359.72855 * 22 21 20 24 24 C 1.38113 * 119.93478 * 179.71945 * 23 22 21 25 25 C 1.38282 * 120.06686 * 0.55495 * 24 23 22 26 26 C 1.38274 * 120.13052 * 359.71845 * 25 24 23 27 27 C 1.38126 * 120.06449 * 0.02562 * 26 25 24 28 28 N 1.40215 * 106.77158 * 0.02562 * 21 20 19 29 29 N 1.28750 * 108.38525 * 359.97438 * 28 21 20 30 30 C 1.53781 * 87.08247 * 25.43219 * 13 12 10 31 31 H 0.96994 * 120.00147 * 359.97438 * 1 2 3 32 32 H 0.96990 * 119.99790 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.60914 * 334.64690 * 12 10 9 34 34 H 1.09001 * 113.69236 * 203.76644 * 12 10 9 35 35 H 1.08997 * 109.47427 * 55.00087 * 15 13 12 36 36 H 1.09004 * 109.47290 * 294.99524 * 15 13 12 37 37 H 0.97001 * 119.99593 * 359.97438 * 16 15 13 38 38 H 1.08003 * 126.60476 * 0.22529 * 20 19 17 39 39 H 1.08007 * 120.03041 * 359.96995 * 23 22 21 40 40 H 1.08002 * 119.96924 * 180.27412 * 24 23 22 41 41 H 1.08000 * 119.93874 * 179.70591 * 25 24 23 42 42 H 1.07996 * 119.96978 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.02968 * 180.02562 * 27 26 25 44 44 H 1.09001 * 113.61389 * 89.11241 * 30 13 12 45 45 H 1.08999 * 113.61647 * 220.01701 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 0.4049 12 6 1.2603 -4.8288 0.5949 13 6 0.7223 -5.0805 -0.8235 14 1 -0.1893 -4.5272 -1.0493 15 6 0.6227 -6.5633 -1.1870 16 7 -0.0076 -6.7025 -2.5022 17 6 -0.2001 -7.9271 -3.0311 18 8 0.1498 -8.9165 -2.4168 19 6 -0.8352 -8.0671 -4.3550 20 6 -1.0858 -9.2452 -4.9998 21 7 -1.6733 -8.9299 -6.1746 22 6 -2.1045 -9.8278 -7.1615 23 6 -1.9369 -11.1940 -6.9802 24 6 -2.3679 -12.0762 -7.9515 25 6 -2.9555 -11.5994 -9.1089 26 6 -3.1187 -10.2390 -9.2949 27 6 -2.6944 -9.3521 -8.3247 28 7 -1.7677 -7.5316 -6.2173 29 7 -1.2653 -7.0573 -5.1309 30 6 2.0011 -4.4032 -1.3439 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 0.4930 -4.5188 1.3044 34 1 1.8860 -5.6366 0.9744 35 1 0.0218 -7.0811 -0.4395 36 1 1.6218 -6.9984 -1.2151 37 1 -0.2863 -5.9132 -2.9923 38 1 -0.8616 -10.2378 -4.6379 39 1 -1.4735 -11.5667 -6.0786 40 1 -2.2417 -13.1393 -7.8090 41 1 -3.2874 -12.2909 -9.8692 42 1 -3.5783 -9.8695 -10.1997 43 1 -2.8225 -8.2897 -8.4704 44 1 2.8306 -5.0940 -1.4950 45 1 1.8319 -3.7497 -2.1997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086416491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 125.584974 kcal Electronic energy + Delta-G solvation = -27259.516824 eV Core-core repulsion = 23280.343004 eV Total energy + Delta-G solvation = -3979.173820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79690 -39.94929 -39.47611 -38.38991 -35.16706 -34.62536 -33.16945 -32.03750 -31.26025 -30.46734 -29.96610 -27.47564 -25.02799 -24.82435 -24.45949 -23.63228 -22.68941 -21.94832 -21.55308 -20.53959 -19.25782 -18.29082 -17.48488 -17.13334 -16.57652 -16.53705 -16.16356 -15.67526 -15.38843 -15.20990 -14.84200 -14.64405 -14.27211 -14.16405 -14.09770 -13.69680 -13.58302 -13.17916 -12.86655 -12.74246 -12.41125 -12.25719 -11.88522 -11.84766 -11.69084 -11.61965 -11.36792 -11.01478 -10.83819 -10.48422 -10.35663 -10.10618 -9.91380 -9.84153 -9.73930 -9.66546 -9.45738 -9.12464 -8.94671 -8.85650 -6.96944 -5.77990 -3.06945 -0.06911 0.61419 1.24095 1.43234 1.49825 3.05073 3.05831 3.13799 3.43823 3.49606 3.51839 3.79013 3.86812 4.13343 4.33668 4.36672 4.50983 4.58279 4.60893 4.64772 4.85655 4.93997 5.08285 5.09527 5.24693 5.28070 5.36172 5.48323 5.60903 5.66035 5.68760 5.72783 5.78808 5.88801 5.90233 5.98191 6.13252 6.24415 6.29906 6.39052 6.41337 6.62165 6.79768 6.93006 7.08429 7.35466 7.61923 7.72144 8.08942 8.41192 9.51915 10.09790 10.43891 11.44506 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.001714 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.582975 B =16331.799903 C =17466.022569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.095 0.905 15 C 0.131 3.869 16 N -0.705 5.705 17 C 0.602 3.398 18 O -0.543 6.543 19 C -0.090 4.090 20 C 0.091 3.909 21 N -0.313 5.313 22 C 0.134 3.866 23 C -0.125 4.125 24 C -0.096 4.096 25 C -0.115 4.115 26 C -0.098 4.098 27 C -0.104 4.104 28 N -0.054 5.054 29 N -0.191 5.191 30 C -0.169 4.169 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.208 0.792 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -27.904 -17.347 33.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.008 3.992 16 N -0.355 5.355 17 C 0.385 3.615 18 O -0.420 6.420 19 C -0.228 4.228 20 C -0.062 4.062 21 N -0.092 5.092 22 C 0.042 3.958 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.116 4.116 27 C -0.124 4.124 28 N -0.033 5.033 29 N -0.065 5.065 30 C -0.210 4.210 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.247 0.753 38 H 0.224 0.776 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.137 -27.155 -17.624 32.950 hybrid contribution 0.179 0.381 0.138 0.443 sum -5.958 -26.775 -17.486 32.529 Atomic orbital electron populations 1.69671 1.05124 1.25645 1.57558 1.24762 0.95533 0.97774 1.02832 0.86103 0.78812 0.84027 0.77163 1.20502 1.21869 1.21860 1.19341 0.91152 0.83977 1.42790 0.90937 1.42175 1.05702 0.99432 1.87105 1.21054 0.95085 0.85599 0.92781 0.91969 1.23443 1.00501 0.99689 0.95046 1.22724 0.99774 0.92786 0.98625 0.88725 1.21575 0.97691 0.97367 0.82554 1.45885 1.60726 1.07897 1.20954 1.16679 0.78262 0.84045 0.82512 1.90805 1.52223 1.37694 1.61297 1.21567 1.12247 0.89095 0.99872 1.23363 0.95189 1.01981 0.85662 1.47676 1.40358 1.07881 1.13246 1.17647 1.01482 0.87653 0.88970 1.20991 1.02094 0.90219 1.01288 1.21060 0.97370 0.99948 0.93066 1.21386 0.98466 0.95794 0.97720 1.21156 0.98674 0.92964 0.98832 1.21029 0.97900 1.01762 0.91702 1.82111 1.21185 0.84190 1.15770 1.74709 1.06563 1.26296 0.98961 1.23896 0.95596 0.99664 1.01824 0.93504 0.78092 0.91301 0.90429 0.91450 0.91210 0.75293 0.77559 0.84648 0.84470 0.84936 0.84491 0.83934 0.91382 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.71 -17.54 5.31 -52.63 -0.28 -17.82 16 10 C 0.17 3.28 4.56 -67.12 -0.31 2.98 16 11 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 12 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 13 C -0.12 -1.84 3.63 -89.81 -0.33 -2.16 16 14 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 16 N -0.70 -9.53 5.55 -61.36 -0.34 -9.87 16 17 C 0.60 8.37 7.82 -12.48 -0.10 8.28 16 18 O -0.54 -8.56 16.86 5.28 0.09 -8.47 16 19 C -0.09 -1.13 6.99 -83.54 -0.58 -1.71 16 20 C 0.09 0.90 10.60 -16.70 -0.18 0.72 16 21 N -0.31 -3.17 3.82 -10.42 -0.04 -3.21 16 22 C 0.13 1.05 6.70 -83.58 -0.56 0.49 16 23 C -0.13 -0.68 9.47 -39.41 -0.37 -1.05 16 24 C -0.10 -0.37 10.04 -39.61 -0.40 -0.77 16 25 C -0.12 -0.43 10.04 -39.55 -0.40 -0.82 16 26 C -0.10 -0.45 10.04 -39.61 -0.40 -0.85 16 27 C -0.10 -0.72 9.68 -39.40 -0.38 -1.10 16 28 N -0.05 -0.68 13.12 60.35 0.79 0.11 16 29 N -0.19 -2.61 12.03 32.85 0.40 -2.21 16 30 C -0.17 -2.86 7.43 -25.92 -0.19 -3.06 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.39 10.13 7.90 -40.82 -0.32 9.81 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 37 H 0.41 5.44 8.16 -40.82 -0.33 5.11 16 38 H 0.21 1.31 7.13 -52.48 -0.37 0.94 16 39 H 0.14 0.49 6.82 -52.48 -0.36 0.13 16 40 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 41 H 0.13 0.19 8.06 -52.49 -0.42 -0.23 16 42 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 1.02 7.73 -52.49 -0.41 0.61 16 44 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -33.72 388.55 -8.44 -42.15 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.96 Total: 10.62 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -4.65 Total: -7.18 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 1.25 Total: -60.37 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.72 -8.44 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086416491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.738 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds