Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46786 * 300.00150 * 3 2 1 6 6 H 1.48498 * 109.46878 * 60.00021 * 3 2 1 7 7 C 1.38806 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00330 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00172 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.84669 * 23.80168 * 10 9 7 12 12 C 1.53778 * 113.61616 * 155.00038 * 10 9 7 13 13 C 1.53776 * 87.08178 * 89.19961 * 12 10 9 14 14 H 1.09004 * 113.61388 * 270.80107 * 13 12 10 15 15 C 1.52995 * 113.61241 * 139.98443 * 13 12 10 16 16 N 1.46507 * 109.47169 * 175.00255 * 15 13 12 17 17 C 1.34777 * 120.00279 * 179.97438 * 16 15 13 18 18 O 1.21598 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.47503 * 119.99823 * 179.97438 * 17 16 15 20 20 C 1.36620 * 125.76386 * 179.97438 * 19 17 16 21 21 N 1.35084 * 106.79477 * 179.97438 * 20 19 17 22 22 C 1.40225 * 126.61150 * 179.97438 * 21 20 19 23 23 C 1.38829 * 120.07028 * 359.72855 * 22 21 20 24 24 C 1.38113 * 119.93478 * 179.71945 * 23 22 21 25 25 C 1.38282 * 120.06686 * 0.55495 * 24 23 22 26 26 C 1.38274 * 120.13052 * 359.71845 * 25 24 23 27 27 C 1.38126 * 120.06449 * 0.02562 * 26 25 24 28 28 N 1.40215 * 106.77158 * 0.02562 * 21 20 19 29 29 N 1.28750 * 108.38525 * 359.97438 * 28 21 20 30 30 C 1.53781 * 87.08247 * 25.43219 * 13 12 10 31 31 H 0.96994 * 120.00147 * 359.97438 * 1 2 3 32 32 H 0.96990 * 119.99790 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.60914 * 334.64690 * 12 10 9 34 34 H 1.09001 * 113.69236 * 203.76644 * 12 10 9 35 35 H 1.08997 * 109.47427 * 55.00087 * 15 13 12 36 36 H 1.09004 * 109.47290 * 294.99524 * 15 13 12 37 37 H 0.97001 * 119.99593 * 359.97438 * 16 15 13 38 38 H 1.08003 * 126.60476 * 0.22529 * 20 19 17 39 39 H 1.08007 * 120.03041 * 359.96995 * 23 22 21 40 40 H 1.08002 * 119.96924 * 180.27412 * 24 23 22 41 41 H 1.08000 * 119.93874 * 179.70591 * 25 24 23 42 42 H 1.07996 * 119.96978 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.02968 * 180.02562 * 27 26 25 44 44 H 1.09001 * 113.61389 * 89.11241 * 30 13 12 45 45 H 1.08999 * 113.61647 * 220.01701 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 0.4049 12 6 1.2603 -4.8288 0.5949 13 6 0.7223 -5.0805 -0.8235 14 1 -0.1893 -4.5272 -1.0493 15 6 0.6227 -6.5633 -1.1870 16 7 -0.0076 -6.7025 -2.5022 17 6 -0.2001 -7.9271 -3.0311 18 8 0.1498 -8.9165 -2.4168 19 6 -0.8352 -8.0671 -4.3550 20 6 -1.0858 -9.2452 -4.9998 21 7 -1.6733 -8.9299 -6.1746 22 6 -2.1045 -9.8278 -7.1615 23 6 -1.9369 -11.1940 -6.9802 24 6 -2.3679 -12.0762 -7.9515 25 6 -2.9555 -11.5994 -9.1089 26 6 -3.1187 -10.2390 -9.2949 27 6 -2.6944 -9.3521 -8.3247 28 7 -1.7677 -7.5316 -6.2173 29 7 -1.2653 -7.0573 -5.1309 30 6 2.0011 -4.4032 -1.3439 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 0.4930 -4.5188 1.3044 34 1 1.8860 -5.6366 0.9744 35 1 0.0218 -7.0811 -0.4395 36 1 1.6218 -6.9984 -1.2151 37 1 -0.2863 -5.9132 -2.9923 38 1 -0.8616 -10.2378 -4.6379 39 1 -1.4735 -11.5667 -6.0786 40 1 -2.2417 -13.1393 -7.8090 41 1 -3.2874 -12.2909 -9.8692 42 1 -3.5783 -9.8695 -10.1997 43 1 -2.8225 -8.2897 -8.4704 44 1 2.8306 -5.0940 -1.4950 45 1 1.8319 -3.7497 -2.1997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086416491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 103.123484 kcal Electronic energy + Delta-G solvation = -27260.490827 eV Core-core repulsion = 23280.343004 eV Total energy + Delta-G solvation = -3980.147824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.61826 -40.83644 -40.21661 -39.71741 -36.09753 -35.75436 -34.93167 -32.67805 -32.12114 -31.79007 -30.86948 -28.76507 -26.41437 -25.92607 -25.39333 -25.01702 -23.51281 -22.87607 -22.47576 -21.44389 -20.16521 -19.57420 -19.29244 -18.07654 -17.42303 -17.30993 -17.01302 -16.69695 -16.34286 -16.28448 -15.95799 -15.72798 -15.64216 -15.13048 -14.90937 -14.71009 -14.58882 -14.52083 -14.14651 -13.72779 -13.53654 -13.26827 -12.94176 -12.92399 -12.88146 -12.64783 -12.47129 -12.36520 -12.12373 -12.10131 -12.03866 -11.64273 -11.47481 -11.25982 -10.91824 -10.79403 -10.74988 -10.10734 -10.10365 -9.59950 -8.98982 -7.94938 -5.23148 -0.67314 0.25660 0.41936 0.70514 0.81377 1.47743 1.48332 1.58488 2.04159 2.11046 2.56062 2.67881 2.98985 3.18696 3.37938 3.60970 3.68297 3.74597 3.80458 3.83753 3.91074 3.98972 4.15265 4.17662 4.31413 4.34667 4.35868 4.43370 4.49049 4.59193 4.74723 4.78624 4.95164 4.95376 5.01283 5.12934 5.20560 5.24758 5.26829 5.37039 5.43067 5.44856 5.46886 5.55234 5.68488 5.87110 6.28915 6.32479 6.69121 7.01896 7.33656 8.11645 8.33344 9.28647 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.001714 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.582975 B =16331.799903 C =17466.022569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.062 0.938 12 C -0.130 4.130 13 C -0.106 4.106 14 H 0.076 0.924 15 C 0.140 3.860 16 N -0.706 5.706 17 C 0.606 3.394 18 O -0.563 6.563 19 C -0.113 4.113 20 C 0.107 3.893 21 N -0.302 5.302 22 C 0.096 3.904 23 C -0.124 4.124 24 C -0.095 4.095 25 C -0.106 4.106 26 C -0.102 4.102 27 C -0.121 4.121 28 N -0.082 5.082 29 N -0.217 5.217 30 C -0.155 4.155 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.411 0.589 38 H 0.242 0.758 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -31.194 -18.296 36.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.080 0.920 12 C -0.169 4.169 13 C -0.125 4.125 14 H 0.095 0.905 15 C 0.017 3.983 16 N -0.356 5.356 17 C 0.390 3.610 18 O -0.441 6.441 19 C -0.252 4.252 20 C -0.048 4.048 21 N -0.079 5.079 22 C 0.006 3.994 23 C -0.145 4.145 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.141 4.141 28 N -0.061 5.061 29 N -0.090 5.090 30 C -0.196 4.196 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.247 0.753 38 H 0.258 0.742 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.146 0.854 44 H 0.113 0.887 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.411 -30.478 -18.604 36.115 hybrid contribution -0.053 1.194 0.305 1.234 sum -5.464 -29.283 -18.299 34.960 Atomic orbital electron populations 1.69824 1.06614 1.25946 1.59675 1.25561 0.96377 1.01098 1.03848 0.85075 0.78310 0.79859 0.76538 1.18931 1.22300 1.22049 1.19734 0.91577 0.85204 1.40772 0.90442 1.42323 1.05323 1.00640 1.87557 1.21404 0.95203 0.84936 0.95176 0.91961 1.23332 0.99926 0.98629 0.95042 1.22506 0.98229 0.93785 0.97930 0.90525 1.21457 0.98330 0.95700 0.82787 1.45895 1.60693 1.08031 1.20947 1.16766 0.77795 0.83646 0.82778 1.90782 1.53273 1.38094 1.61986 1.21534 1.13787 0.90038 0.99808 1.23852 0.93506 1.02537 0.84897 1.47818 1.39151 1.07335 1.13631 1.18054 1.03845 0.88352 0.89161 1.21310 1.01594 0.89131 1.02420 1.21484 0.96229 1.01200 0.92417 1.21815 0.96790 0.95683 0.98178 1.21437 0.98350 0.93371 0.98876 1.21121 0.98801 1.01699 0.92470 1.82036 1.22332 0.85890 1.15811 1.74667 1.07445 1.27334 0.99566 1.23740 0.97420 0.99323 0.99108 0.94087 0.79442 0.92321 0.87088 0.90811 0.90334 0.75319 0.74166 0.82827 0.81511 0.82031 0.82626 0.85366 0.88720 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.11 13.06 21.65 0.28 -59.82 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 8 H 0.08 4.17 7.83 -2.90 -0.02 4.14 16 9 N -0.72 -36.47 5.31 -320.43 -1.70 -38.17 16 10 C 0.14 5.54 4.56 45.52 0.21 5.75 16 11 H 0.06 2.40 8.10 -2.38 -0.02 2.38 16 12 C -0.13 -3.99 7.39 31.12 0.23 -3.76 16 13 C -0.11 -3.15 3.63 -10.27 -0.04 -3.19 16 14 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 15 C 0.14 3.60 5.51 86.38 0.48 4.07 16 16 N -0.71 -18.86 5.55 -466.29 -2.59 -21.45 16 17 C 0.61 16.55 7.82 86.69 0.68 17.23 16 18 O -0.56 -17.03 16.86 -4.03 -0.07 -17.09 16 19 C -0.11 -2.83 6.99 40.81 0.29 -2.54 16 20 C 0.11 2.00 10.60 83.81 0.89 2.88 16 21 N -0.30 -6.06 3.82 -186.88 -0.71 -6.78 16 22 C 0.10 1.44 6.70 38.08 0.25 1.69 16 23 C -0.12 -1.05 9.47 22.38 0.21 -0.84 16 24 C -0.09 -0.41 10.04 22.25 0.22 -0.19 16 25 C -0.11 -0.44 10.04 22.29 0.22 -0.22 16 26 C -0.10 -0.77 10.04 22.25 0.22 -0.55 16 27 C -0.12 -1.66 9.68 22.38 0.22 -1.44 16 28 N -0.08 -2.17 13.12 37.02 0.49 -1.69 16 29 N -0.22 -6.15 12.03 -49.99 -0.60 -6.76 16 30 C -0.16 -5.16 7.43 31.12 0.23 -4.93 16 31 H 0.25 15.05 8.31 -92.71 -0.77 14.27 16 32 H 0.37 20.33 7.90 -92.72 -0.73 19.60 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 2.70 8.10 -2.39 -0.02 2.68 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.93 7.84 -2.38 -0.02 1.91 16 37 H 0.41 11.13 8.16 -92.71 -0.76 10.37 16 38 H 0.24 2.48 7.13 -2.91 -0.02 2.46 16 39 H 0.15 0.63 6.82 -2.91 -0.02 0.61 16 40 H 0.17 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.16 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 43 H 0.13 2.02 7.73 -2.91 -0.02 2.00 16 44 H 0.09 2.66 7.90 -2.39 -0.02 2.64 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -75.17 388.55 2.29 -72.88 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.45 Total: 32.78 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.62 Total: -2.69 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -4.84 Total: -134.67 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.07 Total: -17.09 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.17 2.29 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086416491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.007 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds