Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46947 * 299.99908 * 3 2 1 6 6 H 1.48503 * 109.46884 * 59.99496 * 3 2 1 7 7 C 1.38811 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00063 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99564 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99616 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85296 * 23.80332 * 10 9 7 12 12 C 1.53781 * 113.61334 * 155.00088 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.07333 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.52990 * 113.61464 * 140.02626 * 13 12 10 16 16 N 1.46497 * 109.47171 * 174.99989 * 15 13 12 17 17 C 1.34777 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21612 * 120.00254 * 0.02562 * 17 16 15 19 19 C 1.47321 * 120.00050 * 179.97438 * 17 16 15 20 20 C 1.37913 * 126.80629 * 0.02836 * 19 17 16 21 21 N 1.34190 * 107.89667 * 179.97438 * 20 19 17 22 22 H 0.96999 * 125.17025 * 179.97438 * 21 20 19 23 23 N 1.39772 * 109.66338 * 0.02562 * 21 20 19 24 24 C 1.31377 * 109.07463 * 359.70025 * 23 21 20 25 25 C 1.48263 * 126.51581 * 180.28625 * 24 23 21 26 26 C 1.39809 * 120.91127 * 144.91299 * 25 24 23 27 27 C 1.37965 * 119.01725 * 179.70724 * 26 25 24 28 28 N 1.31933 * 120.88388 * 0.57927 * 27 26 25 29 29 C 1.31930 * 122.01477 * 359.71466 * 28 27 26 30 30 C 1.37966 * 120.88707 * 359.97438 * 29 28 27 31 31 C 1.53781 * 113.61146 * 252.49565 * 10 9 7 32 32 H 0.97001 * 120.00131 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00213 * 359.97438 * 9 7 2 34 34 H 1.09002 * 113.61445 * 203.66333 * 12 10 9 35 35 H 1.09002 * 113.61408 * 334.48063 * 12 10 9 36 36 H 1.09007 * 109.47036 * 294.99322 * 15 13 12 37 37 H 1.08994 * 109.47734 * 54.99728 * 15 13 12 38 38 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 39 39 H 1.08001 * 126.05368 * 359.97438 * 20 19 17 40 40 H 1.08009 * 120.49101 * 359.97438 * 26 25 24 41 41 H 1.08003 * 119.56075 * 180.29201 * 27 26 25 42 42 H 1.08002 * 119.55801 * 179.97438 * 29 28 27 43 43 H 1.07996 * 120.49336 * 180.02562 * 30 29 28 44 44 H 1.09005 * 113.61471 * 25.43638 * 31 10 9 45 45 H 1.08996 * 113.61178 * 156.24980 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 3.0655 -3.5636 0.4078 12 6 1.2599 -4.8285 0.5970 13 6 0.7191 -5.0807 -0.8203 14 1 -0.1914 -4.5253 -1.0454 15 6 0.6171 -6.5636 -1.1825 16 7 -0.0157 -6.7030 -2.4964 17 6 -0.2107 -7.9278 -3.0240 18 8 0.1382 -8.9173 -2.4092 19 6 -0.8476 -8.0679 -4.3450 20 6 -1.2954 -7.0484 -5.1587 21 7 -1.8080 -7.6016 -6.2686 22 1 -2.1945 -7.1105 -7.0104 23 7 -1.7014 -8.9932 -6.1929 24 6 -1.1253 -9.3185 -5.0578 25 6 -0.8177 -10.6900 -4.5859 26 6 0.3341 -10.9505 -3.8374 27 6 0.5790 -12.2402 -3.4131 28 7 -0.2501 -13.2212 -3.7145 29 6 -1.3443 -13.0193 -4.4233 30 6 -1.6685 -11.7592 -4.8822 31 6 2.0003 -4.4027 -1.3419 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 0.0005 34 1 1.8865 -5.6362 0.9754 35 1 0.4940 -4.5185 1.3079 36 1 1.6155 -7.0000 -1.2120 37 1 0.0169 -7.0801 -0.4335 38 1 -0.2944 -5.9138 -2.9867 39 1 -1.2429 -5.9919 -4.9411 40 1 1.0197 -10.1530 -3.5912 41 1 1.4636 -12.4504 -2.8303 42 1 -1.9951 -13.8516 -4.6475 43 1 -2.5660 -11.6010 -5.4616 44 1 1.8311 -3.7487 -2.1974 45 1 2.8301 -5.0928 -1.4942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086417004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = 107.767734 kcal Electronic energy + Delta-G solvation = -27981.767643 eV Core-core repulsion = 24001.821209 eV Total energy + Delta-G solvation = -3979.946434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62913 -39.96033 -39.48688 -38.38898 -34.80722 -33.85532 -33.25943 -31.43858 -31.02522 -30.84945 -30.00799 -27.28927 -25.10356 -24.58803 -23.98856 -23.65540 -23.02391 -21.75897 -20.81412 -20.14482 -19.02703 -18.30559 -17.34154 -16.90820 -16.63536 -16.28488 -16.02841 -15.73555 -15.46008 -15.04705 -14.75026 -14.35361 -14.26064 -14.12027 -13.89457 -13.76803 -13.56574 -13.19128 -13.04447 -12.93061 -12.31968 -11.97811 -11.92000 -11.43993 -11.43561 -11.09295 -10.91134 -10.80528 -10.54048 -10.26432 -10.17123 -9.90169 -9.75104 -9.62461 -9.53356 -9.50261 -9.24811 -9.06490 -8.95774 -8.89307 -7.05934 -5.86911 -3.15839 0.62743 1.06976 1.10984 1.98482 2.20599 3.14243 3.23749 3.36747 3.43252 3.45055 3.71907 3.83947 4.14660 4.33956 4.50415 4.60095 4.77865 4.86961 4.92460 4.98180 5.02091 5.08446 5.09375 5.21652 5.39926 5.47768 5.55154 5.57410 5.66971 5.72041 5.82831 5.91768 5.98349 6.06528 6.12317 6.17089 6.32725 6.37974 6.53803 6.56124 6.60955 6.68624 6.84756 6.98449 6.98820 7.48200 7.64134 7.83217 8.18883 8.32376 9.43280 10.00723 10.34813 11.35515 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.001996 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.608188 B =14023.429484 C =15065.114319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.092 0.908 15 C 0.133 3.867 16 N -0.720 5.720 17 C 0.589 3.411 18 O -0.539 6.539 19 C -0.276 4.276 20 C 0.113 3.887 21 N -0.460 5.460 22 H 0.447 0.553 23 N -0.276 5.276 24 C 0.166 3.834 25 C 0.016 3.984 26 C -0.102 4.102 27 C 0.090 3.910 28 N -0.480 5.480 29 C 0.085 3.915 30 C -0.143 4.143 31 C -0.168 4.168 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.193 0.807 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.135 0.865 44 H 0.065 0.935 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 -19.765 -12.315 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.054 3.946 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.110 0.890 15 C 0.010 3.990 16 N -0.370 5.370 17 C 0.376 3.624 18 O -0.418 6.418 19 C -0.291 4.291 20 C -0.038 4.038 21 N -0.166 5.166 22 H 0.292 0.708 23 N -0.097 5.097 24 C -0.003 4.003 25 C 0.006 3.994 26 C -0.123 4.123 27 C -0.066 4.066 28 N -0.189 5.189 29 C -0.072 4.072 30 C -0.164 4.164 31 C -0.209 4.209 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.210 0.790 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.173 0.827 43 H 0.153 0.847 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.680 -21.531 -12.629 25.231 hybrid contribution -0.322 3.043 -0.320 3.077 sum -4.002 -18.488 -12.949 22.924 Atomic orbital electron populations 1.69667 1.05131 1.25676 1.57606 1.24765 0.95551 0.97807 1.02819 0.86103 0.78845 0.83955 0.77198 1.20473 1.21873 1.21816 1.19341 0.91168 0.83956 1.42766 0.90920 1.42177 1.05667 0.99455 1.87148 1.21061 0.95131 0.85586 0.92796 0.91964 1.23440 1.00496 0.99691 0.95115 1.22755 0.99474 0.92962 0.98688 0.88963 1.21480 0.97645 0.96946 0.82886 1.45907 1.62313 1.07516 1.21261 1.17127 0.78005 0.83439 0.83831 1.90742 1.52184 1.36904 1.61965 1.21340 1.16862 0.91503 0.99413 1.23149 0.94002 0.99687 0.86945 1.45978 1.48176 1.04938 1.17494 0.70839 1.77351 1.22463 0.90357 1.19533 1.21663 0.95347 0.92508 0.90786 1.17954 0.95431 0.88475 0.97569 1.22598 0.96968 0.98748 0.94027 1.22702 0.98302 0.88225 0.97419 1.67595 1.03664 1.36082 1.11564 1.22592 0.94163 0.95822 0.94608 1.22172 1.00413 0.93206 1.00653 1.23930 0.95665 0.99591 1.01674 0.93499 0.78141 0.90408 0.91354 0.91375 0.91673 0.76782 0.79016 0.82682 0.82443 0.82671 0.84707 0.91602 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.63 5.31 -52.63 -0.28 -16.91 16 10 C 0.17 3.07 4.56 -67.11 -0.31 2.76 16 11 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 12 C -0.15 -2.21 7.38 -25.92 -0.19 -2.41 16 13 C -0.12 -1.62 3.64 -89.67 -0.33 -1.95 16 14 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 15 C 0.13 1.60 5.52 -4.05 -0.02 1.57 16 16 N -0.72 -7.66 5.55 -61.42 -0.34 -8.00 16 17 C 0.59 7.10 7.71 -12.57 -0.10 7.01 16 18 O -0.54 -7.88 12.50 5.27 0.07 -7.81 16 19 C -0.28 -2.89 6.28 -102.95 -0.65 -3.53 16 20 C 0.11 0.78 11.50 -16.64 -0.19 0.59 16 21 N -0.46 -3.12 7.20 30.81 0.22 -2.90 16 22 H 0.45 1.41 8.96 -182.85 -1.64 -0.23 16 23 N -0.28 -2.84 12.64 34.57 0.44 -2.41 16 24 C 0.17 1.90 6.98 -80.57 -0.56 1.34 16 25 C 0.02 0.19 5.75 -104.60 -0.60 -0.41 16 26 C -0.10 -1.21 7.89 -39.09 -0.31 -1.52 16 27 C 0.09 1.01 11.17 -17.61 -0.20 0.81 16 28 N -0.48 -5.64 10.35 -13.34 -0.14 -5.78 16 29 C 0.08 0.85 11.17 -17.61 -0.20 0.65 16 30 C -0.14 -1.46 9.88 -39.09 -0.39 -1.85 16 31 C -0.17 -2.55 7.44 -25.78 -0.19 -2.75 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.38 9.58 7.90 -40.82 -0.32 9.26 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.41 7.43 -40.82 -0.30 3.10 16 39 H 0.19 0.61 7.48 -52.49 -0.39 0.22 16 40 H 0.16 1.91 5.78 -52.48 -0.30 1.61 16 41 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -33.96 382.22 -10.17 -44.13 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.13 Total: 10.35 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.47 Total: -6.72 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.63 Total: -62.30 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.96 -10.17 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086417004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.897 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds