Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46947 * 299.99908 * 3 2 1 6 6 H 1.48503 * 109.46884 * 59.99496 * 3 2 1 7 7 C 1.38811 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00063 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99564 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99616 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85296 * 23.80332 * 10 9 7 12 12 C 1.53781 * 113.61334 * 155.00088 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.07333 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.52990 * 113.61464 * 140.02626 * 13 12 10 16 16 N 1.46497 * 109.47171 * 174.99989 * 15 13 12 17 17 C 1.34777 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21612 * 120.00254 * 0.02562 * 17 16 15 19 19 C 1.47321 * 120.00050 * 179.97438 * 17 16 15 20 20 C 1.37913 * 126.80629 * 0.02836 * 19 17 16 21 21 N 1.34190 * 107.89667 * 179.97438 * 20 19 17 22 22 H 0.96999 * 125.17025 * 179.97438 * 21 20 19 23 23 N 1.39772 * 109.66338 * 0.02562 * 21 20 19 24 24 C 1.31377 * 109.07463 * 359.70025 * 23 21 20 25 25 C 1.48263 * 126.51581 * 180.28625 * 24 23 21 26 26 C 1.39809 * 120.91127 * 144.91299 * 25 24 23 27 27 C 1.37965 * 119.01725 * 179.70724 * 26 25 24 28 28 N 1.31933 * 120.88388 * 0.57927 * 27 26 25 29 29 C 1.31930 * 122.01477 * 359.71466 * 28 27 26 30 30 C 1.37966 * 120.88707 * 359.97438 * 29 28 27 31 31 C 1.53781 * 113.61146 * 252.49565 * 10 9 7 32 32 H 0.97001 * 120.00131 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00213 * 359.97438 * 9 7 2 34 34 H 1.09002 * 113.61445 * 203.66333 * 12 10 9 35 35 H 1.09002 * 113.61408 * 334.48063 * 12 10 9 36 36 H 1.09007 * 109.47036 * 294.99322 * 15 13 12 37 37 H 1.08994 * 109.47734 * 54.99728 * 15 13 12 38 38 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 39 39 H 1.08001 * 126.05368 * 359.97438 * 20 19 17 40 40 H 1.08009 * 120.49101 * 359.97438 * 26 25 24 41 41 H 1.08003 * 119.56075 * 180.29201 * 27 26 25 42 42 H 1.08002 * 119.55801 * 179.97438 * 29 28 27 43 43 H 1.07996 * 120.49336 * 180.02562 * 30 29 28 44 44 H 1.09005 * 113.61471 * 25.43638 * 31 10 9 45 45 H 1.08996 * 113.61178 * 156.24980 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 3.0655 -3.5636 0.4078 12 6 1.2599 -4.8285 0.5970 13 6 0.7191 -5.0807 -0.8203 14 1 -0.1914 -4.5253 -1.0454 15 6 0.6171 -6.5636 -1.1825 16 7 -0.0157 -6.7030 -2.4964 17 6 -0.2107 -7.9278 -3.0240 18 8 0.1382 -8.9173 -2.4092 19 6 -0.8476 -8.0679 -4.3450 20 6 -1.2954 -7.0484 -5.1587 21 7 -1.8080 -7.6016 -6.2686 22 1 -2.1945 -7.1105 -7.0104 23 7 -1.7014 -8.9932 -6.1929 24 6 -1.1253 -9.3185 -5.0578 25 6 -0.8177 -10.6900 -4.5859 26 6 0.3341 -10.9505 -3.8374 27 6 0.5790 -12.2402 -3.4131 28 7 -0.2501 -13.2212 -3.7145 29 6 -1.3443 -13.0193 -4.4233 30 6 -1.6685 -11.7592 -4.8822 31 6 2.0003 -4.4027 -1.3419 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 0.0005 34 1 1.8865 -5.6362 0.9754 35 1 0.4940 -4.5185 1.3079 36 1 1.6155 -7.0000 -1.2120 37 1 0.0169 -7.0801 -0.4335 38 1 -0.2944 -5.9138 -2.9867 39 1 -1.2429 -5.9919 -4.9411 40 1 1.0197 -10.1530 -3.5912 41 1 1.4636 -12.4504 -2.8303 42 1 -1.9951 -13.8516 -4.6475 43 1 -2.5660 -11.6010 -5.4616 44 1 1.8311 -3.7487 -2.1974 45 1 2.8301 -5.0928 -1.4942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086417004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 83.805153 kcal Electronic energy + Delta-G solvation = -27982.806738 eV Core-core repulsion = 24001.821209 eV Total energy + Delta-G solvation = -3980.985529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32899 -40.74431 -40.53325 -39.56929 -35.98806 -35.01510 -34.54957 -32.31620 -32.14978 -31.58417 -31.38605 -28.46796 -26.37720 -25.74788 -25.33038 -24.52098 -23.98914 -22.92097 -21.58326 -20.98265 -19.95300 -19.49006 -19.17487 -17.67105 -17.46713 -17.08090 -16.93300 -16.72867 -16.55305 -16.29197 -15.88078 -15.58565 -15.45626 -15.03135 -14.91348 -14.67514 -14.63427 -14.44584 -14.33702 -13.80165 -13.61769 -13.23571 -12.92387 -12.89047 -12.70502 -12.59145 -12.17694 -12.10858 -12.01947 -11.58189 -11.49302 -11.43390 -11.03200 -10.86611 -10.73788 -10.46249 -10.26450 -10.07327 -9.92257 -9.68950 -8.96918 -7.94068 -5.21472 -0.18445 0.27156 0.47860 1.18690 1.48705 1.49954 1.59287 1.64720 2.27771 2.39486 2.56925 2.91983 3.14544 3.39085 3.49802 3.60976 3.76407 3.84937 3.88658 3.98602 4.09170 4.14896 4.21253 4.22695 4.33681 4.37187 4.39558 4.47281 4.70765 4.77613 4.81440 4.88255 4.95476 4.98901 5.05843 5.16560 5.20164 5.32330 5.36137 5.41260 5.53563 5.61753 5.71508 5.76638 6.13465 6.30238 6.31656 6.66707 7.02611 7.33178 7.35464 8.13289 8.35372 9.29220 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.001996 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.608188 B =14023.429484 C =15065.114319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.142 3.858 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.100 4.100 14 H 0.084 0.916 15 C 0.144 3.856 16 N -0.712 5.712 17 C 0.588 3.412 18 O -0.570 6.570 19 C -0.308 4.308 20 C 0.141 3.859 21 N -0.444 5.444 22 H 0.463 0.537 23 N -0.294 5.294 24 C 0.148 3.852 25 C 0.001 3.999 26 C -0.113 4.113 27 C 0.081 3.919 28 N -0.500 5.500 29 C 0.084 3.916 30 C -0.146 4.146 31 C -0.150 4.150 32 H 0.250 0.750 33 H 0.375 0.625 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.409 0.591 39 H 0.234 0.766 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.185 0.815 43 H 0.150 0.850 44 H 0.051 0.949 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -19.996 -13.435 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.075 0.925 12 C -0.176 4.176 13 C -0.119 4.119 14 H 0.102 0.898 15 C 0.021 3.979 16 N -0.363 5.363 17 C 0.377 3.623 18 O -0.452 6.452 19 C -0.323 4.323 20 C -0.011 4.011 21 N -0.151 5.151 22 H 0.312 0.688 23 N -0.116 5.116 24 C -0.020 4.020 25 C -0.009 4.009 26 C -0.135 4.135 27 C -0.074 4.074 28 N -0.210 5.210 29 C -0.073 4.073 30 C -0.167 4.167 31 C -0.191 4.191 32 H 0.059 0.941 33 H 0.207 0.793 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.250 0.750 40 H 0.164 0.836 41 H 0.190 0.810 42 H 0.202 0.798 43 H 0.168 0.832 44 H 0.070 0.930 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.573 -21.787 -13.786 26.029 hybrid contribution -0.339 3.077 -0.007 3.096 sum -3.912 -18.710 -13.793 23.571 Atomic orbital electron populations 1.69804 1.06445 1.25896 1.59712 1.25503 0.96370 1.00885 1.03973 0.85124 0.78292 0.80121 0.76532 1.19156 1.22089 1.22381 1.19694 0.91497 0.85208 1.40639 0.90643 1.42295 1.05332 1.00503 1.87605 1.21400 0.94944 0.84909 0.95584 0.92502 1.23354 0.99953 0.98634 0.95658 1.22524 0.98312 0.93789 0.97260 0.89799 1.21259 0.97848 0.95295 0.83528 1.45759 1.62019 1.07741 1.20787 1.17346 0.77584 0.83161 0.84253 1.90728 1.53564 1.37928 1.62940 1.21286 1.19119 0.92280 0.99589 1.23683 0.91136 1.00704 0.85537 1.46037 1.47115 1.03994 1.17988 0.68768 1.77285 1.22756 0.92244 1.19271 1.21749 0.96087 0.92760 0.91436 1.18231 0.95650 0.89420 0.97637 1.22544 0.97293 0.98732 0.94887 1.22966 0.98873 0.88079 0.97516 1.67650 1.04493 1.36357 1.12501 1.23101 0.93886 0.96721 0.93570 1.22372 1.00680 0.92970 1.00642 1.23732 0.97295 0.99112 0.98949 0.94085 0.79292 0.87802 0.92600 0.91207 0.92073 0.75442 0.74995 0.83642 0.80980 0.79776 0.83236 0.93043 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.80 13.06 21.65 0.28 -56.52 16 2 C -0.08 -4.14 5.50 84.86 0.47 -3.68 16 3 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -12.65 9.97 84.03 0.84 -11.81 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.72 -33.89 5.31 -320.43 -1.70 -35.59 16 10 C 0.14 5.07 4.56 45.52 0.21 5.28 16 11 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 12 C -0.14 -3.89 7.38 31.12 0.23 -3.66 16 13 C -0.10 -2.53 3.64 -10.18 -0.04 -2.57 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.14 3.18 5.52 86.38 0.48 3.65 16 16 N -0.71 -13.82 5.55 -466.50 -2.59 -16.41 16 17 C 0.59 13.59 7.71 86.63 0.67 14.26 16 18 O -0.57 -16.63 12.50 -4.07 -0.05 -16.69 16 19 C -0.31 -6.01 6.28 -18.78 -0.12 -6.13 16 20 C 0.14 1.54 11.50 84.26 0.97 2.51 16 21 N -0.44 -4.87 7.20 -56.44 -0.41 -5.27 16 22 H 0.46 1.52 8.96 -213.53 -1.91 -0.39 16 23 N -0.29 -5.65 12.64 -44.53 -0.56 -6.21 16 24 C 0.15 3.30 6.98 44.07 0.31 3.60 16 25 C 0.00 0.02 5.75 -19.85 -0.11 -0.09 16 26 C -0.11 -2.75 7.89 22.59 0.18 -2.57 16 27 C 0.08 1.85 11.17 84.61 0.95 2.79 16 28 N -0.50 -11.62 10.35 -196.13 -2.03 -13.65 16 29 C 0.08 1.60 11.17 84.61 0.95 2.55 16 30 C -0.15 -2.90 9.88 22.59 0.22 -2.68 16 31 C -0.15 -4.30 7.44 31.21 0.23 -4.07 16 32 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.37 18.89 7.90 -92.71 -0.73 18.16 16 34 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.56 7.85 -2.38 -0.02 1.54 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.41 5.95 7.43 -92.71 -0.69 5.26 16 39 H 0.23 0.45 7.48 -2.91 -0.02 0.43 16 40 H 0.15 3.75 5.78 -2.91 -0.02 3.74 16 41 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 42 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.09 2.23 7.91 -2.39 -0.02 2.21 16 Total: -1.00 -74.61 382.22 -0.88 -75.49 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -2.27 Total: 30.87 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 6.42 Total: -2.61 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -7.01 Total: -133.65 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.61 -0.88 -75.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086417004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.296 kcal (2) G-P(sol) polarization free energy of solvation -74.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds