Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47272 * 270.00301 * 3 2 1 5 5 H 1.48504 * 109.47143 * 30.00110 * 3 2 1 6 6 H 1.48500 * 109.47016 * 150.00442 * 3 2 1 7 7 C 1.38811 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99564 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99616 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85296 * 23.80332 * 10 9 7 12 12 C 1.53781 * 113.61334 * 155.00088 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.07333 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.52990 * 113.61464 * 140.02626 * 13 12 10 16 16 N 1.46497 * 109.47171 * 174.99989 * 15 13 12 17 17 C 1.34777 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21570 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.47695 * 120.00042 * 179.97438 * 17 16 15 20 20 C 1.41569 * 126.43672 * 180.02562 * 19 17 16 21 21 C 1.35323 * 105.55626 * 180.02562 * 20 19 17 22 22 N 1.35910 * 107.11702 * 0.02562 * 21 20 19 23 23 C 1.39911 * 124.96626 * 180.02562 * 22 21 20 24 24 C 1.39325 * 120.85455 * 359.71818 * 23 22 21 25 25 C 1.38024 * 119.08115 * 179.73142 * 24 23 22 26 26 N 1.31936 * 120.82829 * 0.55307 * 25 24 23 27 27 C 1.31929 * 121.88814 * 359.72120 * 26 25 24 28 28 C 1.38017 * 120.83336 * 359.97438 * 27 26 25 29 29 N 1.28479 * 110.07128 * 359.72475 * 22 21 20 30 30 C 1.53781 * 113.61146 * 252.49565 * 10 9 7 31 31 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00213 * 359.97438 * 9 7 2 33 33 H 1.09002 * 113.61445 * 203.66333 * 12 10 9 34 34 H 1.09002 * 113.61408 * 334.48063 * 12 10 9 35 35 H 1.09007 * 109.47036 * 294.99322 * 15 13 12 36 36 H 1.08994 * 109.47734 * 54.99728 * 15 13 12 37 37 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 38 38 H 1.07991 * 127.21859 * 359.97438 * 20 19 17 39 39 H 1.08003 * 126.44200 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.46396 * 359.97438 * 24 23 22 41 41 H 1.07992 * 119.58546 * 180.27635 * 25 24 23 42 42 H 1.07999 * 119.58251 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.45879 * 179.97438 * 28 27 26 44 44 H 1.09005 * 113.61471 * 25.43638 * 30 10 9 45 45 H 1.08996 * 113.61178 * 156.24980 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 1 3.5276 -3.2967 -0.4079 12 6 5.5258 -2.3655 -0.5981 13 6 6.0151 -2.0229 0.8190 14 1 5.9894 -0.9567 1.0438 15 6 7.3505 -2.6758 1.1807 16 7 7.7881 -2.1972 2.4943 17 6 8.9465 -2.6406 3.0216 18 8 9.6286 -3.4374 2.4069 19 6 9.3880 -2.1576 4.3457 20 6 10.5733 -2.5299 5.0242 21 6 10.5554 -1.8427 6.1899 22 7 9.4160 -1.1018 6.1999 23 6 9.0242 -0.2476 7.2364 24 6 9.8104 -0.1008 8.3772 25 6 9.3916 0.7561 9.3749 26 7 8.2583 1.4222 9.2624 27 6 7.4839 1.3058 8.2007 28 6 7.8350 0.4741 7.1568 29 7 8.7544 -1.2957 5.1158 30 6 4.7876 -2.7933 1.3411 31 1 -0.4850 0.8400 0.0004 32 1 3.8645 -0.3621 -0.0014 33 1 5.9118 -3.3121 -0.9765 34 1 5.6399 -1.5473 -1.3093 35 1 7.2292 -3.7587 1.2106 36 1 8.0977 -2.4144 0.4315 37 1 7.2442 -1.5611 2.9847 38 1 11.3322 -3.2185 4.6835 39 1 11.3050 -1.8773 6.9666 40 1 10.7368 -0.6468 8.4777 41 1 9.9970 0.8795 10.2606 42 1 6.5635 1.8684 8.1478 43 1 7.1963 0.3830 6.2906 44 1 4.3062 -2.3197 2.1968 45 1 4.9704 -3.8570 1.4937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086425040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 127.088315 kcal Electronic energy + Delta-G solvation = -27798.248840 eV Core-core repulsion = 23819.140210 eV Total energy + Delta-G solvation = -3979.108630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.43525 -40.59473 -39.68702 -38.56288 -34.92371 -34.81888 -33.25996 -32.26303 -31.16138 -31.00279 -30.52259 -27.85635 -25.33551 -25.15189 -24.48146 -23.53746 -22.62845 -21.77653 -21.62981 -20.33480 -19.27082 -18.62679 -17.71229 -17.48509 -16.74167 -16.65099 -16.49612 -16.03326 -15.54356 -15.33083 -14.93084 -14.56652 -14.42183 -14.32278 -14.25203 -14.08735 -13.62552 -13.53766 -13.42104 -12.79728 -12.53000 -12.39243 -12.06244 -11.61422 -11.45453 -11.36376 -11.26979 -10.93369 -10.54969 -10.49378 -10.23416 -10.20131 -9.99589 -9.88722 -9.81228 -9.68564 -9.55897 -9.26984 -9.04755 -8.92838 -7.32307 -5.81672 -3.17834 0.03176 0.44407 1.40411 1.70024 1.75548 3.00852 3.12887 3.22258 3.32883 3.36014 3.41601 3.66393 3.83077 4.02413 4.24212 4.29179 4.46484 4.54102 4.65874 4.83758 4.91168 4.92660 5.01942 5.06758 5.11661 5.17038 5.24617 5.37648 5.38261 5.41861 5.49463 5.73574 5.81445 5.86690 5.89367 5.90940 6.11412 6.22019 6.26538 6.30546 6.47300 6.61772 6.71936 6.88261 7.19084 7.32333 7.47892 7.96319 8.02749 8.38071 9.15841 9.88089 10.07346 11.36472 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.002575 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.172984 B =10869.312704 C =13408.900329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.072 0.928 12 C -0.148 4.148 13 C -0.124 4.124 14 H 0.090 0.910 15 C 0.130 3.870 16 N -0.709 5.709 17 C 0.600 3.400 18 O -0.533 6.533 19 C 0.007 3.993 20 C -0.165 4.165 21 C -0.014 4.014 22 N -0.242 5.242 23 C 0.185 3.815 24 C -0.186 4.186 25 C 0.125 3.875 26 N -0.487 5.487 27 C 0.127 3.873 28 C -0.164 4.164 29 N -0.254 5.254 30 C -0.166 4.166 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.408 0.592 38 H 0.172 0.828 39 H 0.189 0.811 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.155 0.845 44 H 0.068 0.932 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.781 -1.678 17.462 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.187 4.187 13 C -0.143 4.143 14 H 0.108 0.892 15 C 0.008 3.992 16 N -0.359 5.359 17 C 0.384 3.616 18 O -0.408 6.408 19 C -0.156 4.156 20 C -0.192 4.192 21 C -0.153 4.153 22 N -0.024 5.024 23 C 0.086 3.914 24 C -0.208 4.208 25 C -0.032 4.032 26 N -0.196 5.196 27 C -0.030 4.030 28 C -0.186 4.186 29 N -0.087 5.087 30 C -0.207 4.207 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.243 0.757 38 H 0.190 0.810 39 H 0.206 0.794 40 H 0.164 0.836 41 H 0.186 0.814 42 H 0.188 0.812 43 H 0.173 0.827 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.738 -1.061 17.740 29.653 hybrid contribution 1.386 0.503 -0.370 1.521 sum 25.124 -0.558 17.369 30.549 Atomic orbital electron populations 1.69697 1.05097 1.25892 1.57250 1.24681 0.95250 0.97213 1.01915 0.86563 0.79148 0.85023 0.77845 1.21014 1.21668 1.20392 1.19114 0.80411 0.94840 1.43237 0.89019 1.42517 1.03952 1.01622 1.88910 1.21004 0.90108 0.89899 0.92915 0.91012 1.23459 0.98729 1.01629 0.94919 1.22805 0.92549 1.00138 0.98807 0.89167 1.21551 0.95852 0.99078 0.82758 1.45941 1.22225 1.46669 1.21102 1.16811 0.81275 0.80903 0.82649 1.90806 1.54993 1.34202 1.60755 1.22249 0.96276 0.99980 0.97112 1.21908 0.99457 1.03925 0.93873 1.23092 0.92385 0.98008 1.01778 1.42656 1.15813 1.31382 1.12553 1.17926 0.95503 0.91439 0.86543 1.21909 1.01950 1.03356 0.93629 1.22737 0.92506 0.90469 0.97471 1.67744 1.04976 1.22251 1.24617 1.22877 0.98503 0.94137 0.87457 1.22113 0.96139 0.97818 1.02529 1.73567 1.22403 1.17911 0.94797 1.23909 0.96427 0.98825 1.01561 0.92981 0.80526 0.89914 0.91404 0.91010 0.91400 0.75661 0.81036 0.79428 0.83635 0.81435 0.81215 0.82703 0.91334 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.97 55.49 0.78 -28.17 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.72 27.73 -169.99 -4.71 17.00 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 7 C -0.25 -6.82 10.45 -15.06 -0.16 -6.97 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.73 -16.74 5.11 -52.63 -0.27 -17.01 16 10 C 0.17 3.17 4.56 -67.11 -0.31 2.86 16 11 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 12 C -0.15 -2.16 7.38 -25.92 -0.19 -2.36 16 13 C -0.12 -1.73 3.64 -89.67 -0.33 -2.05 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 15 C 0.13 1.66 5.52 -4.05 -0.02 1.63 16 16 N -0.71 -8.93 5.55 -61.30 -0.34 -9.27 16 17 C 0.60 8.19 7.82 -12.40 -0.10 8.09 16 18 O -0.53 -8.59 16.92 5.30 0.09 -8.50 16 19 C 0.01 0.08 7.13 -82.75 -0.59 -0.51 16 20 C -0.16 -1.55 10.80 -39.35 -0.42 -1.97 16 21 C -0.01 -0.11 10.82 -16.78 -0.18 -0.29 16 22 N -0.24 -2.27 3.51 -10.37 -0.04 -2.31 16 23 C 0.19 1.51 6.70 -83.36 -0.56 0.95 16 24 C -0.19 -1.02 9.50 -39.26 -0.37 -1.39 16 25 C 0.13 0.71 11.18 -17.59 -0.20 0.51 16 26 N -0.49 -3.88 10.36 -13.32 -0.14 -4.02 16 27 C 0.13 0.94 11.17 -17.59 -0.20 0.74 16 28 C -0.16 -1.34 9.67 -39.26 -0.38 -1.72 16 29 N -0.25 -2.92 10.94 33.43 0.37 -2.55 16 30 C -0.17 -2.62 7.44 -25.78 -0.19 -2.81 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.36 8.14 5.76 -40.82 -0.24 7.91 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 4.84 8.19 -40.82 -0.33 4.50 16 38 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.19 0.57 7.04 -52.48 -0.37 0.20 16 40 H 0.15 0.36 6.78 -52.49 -0.36 0.00 16 41 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.16 1.29 7.74 -52.49 -0.41 0.88 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -35.05 384.71 -8.67 -43.72 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.91 Total: 10.54 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -4.29 Total: -5.23 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.36 Total: -63.33 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.05 -8.67 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086425040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.806 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds