Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47272 * 270.00301 * 3 2 1 5 5 H 1.48504 * 109.47143 * 30.00110 * 3 2 1 6 6 H 1.48500 * 109.47016 * 150.00442 * 3 2 1 7 7 C 1.38811 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99564 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99616 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85296 * 23.80332 * 10 9 7 12 12 C 1.53781 * 113.61334 * 155.00088 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.07333 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.52990 * 113.61464 * 140.02626 * 13 12 10 16 16 N 1.46497 * 109.47171 * 174.99989 * 15 13 12 17 17 C 1.34777 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21570 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.47695 * 120.00042 * 179.97438 * 17 16 15 20 20 C 1.41569 * 126.43672 * 180.02562 * 19 17 16 21 21 C 1.35323 * 105.55626 * 180.02562 * 20 19 17 22 22 N 1.35910 * 107.11702 * 0.02562 * 21 20 19 23 23 C 1.39911 * 124.96626 * 180.02562 * 22 21 20 24 24 C 1.39325 * 120.85455 * 359.71818 * 23 22 21 25 25 C 1.38024 * 119.08115 * 179.73142 * 24 23 22 26 26 N 1.31936 * 120.82829 * 0.55307 * 25 24 23 27 27 C 1.31929 * 121.88814 * 359.72120 * 26 25 24 28 28 C 1.38017 * 120.83336 * 359.97438 * 27 26 25 29 29 N 1.28479 * 110.07128 * 359.72475 * 22 21 20 30 30 C 1.53781 * 113.61146 * 252.49565 * 10 9 7 31 31 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00213 * 359.97438 * 9 7 2 33 33 H 1.09002 * 113.61445 * 203.66333 * 12 10 9 34 34 H 1.09002 * 113.61408 * 334.48063 * 12 10 9 35 35 H 1.09007 * 109.47036 * 294.99322 * 15 13 12 36 36 H 1.08994 * 109.47734 * 54.99728 * 15 13 12 37 37 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 38 38 H 1.07991 * 127.21859 * 359.97438 * 20 19 17 39 39 H 1.08003 * 126.44200 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.46396 * 359.97438 * 24 23 22 41 41 H 1.07992 * 119.58546 * 180.27635 * 25 24 23 42 42 H 1.07999 * 119.58251 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.45879 * 179.97438 * 28 27 26 44 44 H 1.09005 * 113.61471 * 25.43638 * 30 10 9 45 45 H 1.08996 * 113.61178 * 156.24980 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 1 3.5276 -3.2967 -0.4079 12 6 5.5258 -2.3655 -0.5981 13 6 6.0151 -2.0229 0.8190 14 1 5.9894 -0.9567 1.0438 15 6 7.3505 -2.6758 1.1807 16 7 7.7881 -2.1972 2.4943 17 6 8.9465 -2.6406 3.0216 18 8 9.6286 -3.4374 2.4069 19 6 9.3880 -2.1576 4.3457 20 6 10.5733 -2.5299 5.0242 21 6 10.5554 -1.8427 6.1899 22 7 9.4160 -1.1018 6.1999 23 6 9.0242 -0.2476 7.2364 24 6 9.8104 -0.1008 8.3772 25 6 9.3916 0.7561 9.3749 26 7 8.2583 1.4222 9.2624 27 6 7.4839 1.3058 8.2007 28 6 7.8350 0.4741 7.1568 29 7 8.7544 -1.2957 5.1158 30 6 4.7876 -2.7933 1.3411 31 1 -0.4850 0.8400 0.0004 32 1 3.8645 -0.3621 -0.0014 33 1 5.9118 -3.3121 -0.9765 34 1 5.6399 -1.5473 -1.3093 35 1 7.2292 -3.7587 1.2106 36 1 8.0977 -2.4144 0.4315 37 1 7.2442 -1.5611 2.9847 38 1 11.3322 -3.2185 4.6835 39 1 11.3050 -1.8773 6.9666 40 1 10.7368 -0.6468 8.4777 41 1 9.9970 0.8795 10.2606 42 1 6.5635 1.8684 8.1478 43 1 7.1963 0.3830 6.2906 44 1 4.3062 -2.3197 2.1968 45 1 4.9704 -3.8570 1.4937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086425040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 102.548637 kcal Electronic energy + Delta-G solvation = -27799.312961 eV Core-core repulsion = 23819.140210 eV Total energy + Delta-G solvation = -3980.172751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.11091 -41.16061 -40.74949 -39.83543 -36.13803 -35.55343 -35.00045 -32.82891 -32.66979 -31.74551 -31.49008 -29.04026 -26.47018 -26.22541 -25.25448 -24.95404 -23.59635 -22.89480 -22.33120 -21.27867 -20.16872 -19.78580 -19.56722 -18.43755 -17.45784 -17.26423 -17.13908 -16.89082 -16.66084 -16.38921 -16.08745 -16.00911 -15.50933 -15.07973 -14.96318 -14.83795 -14.74737 -14.68132 -14.61517 -14.19909 -14.00419 -13.38754 -13.12265 -13.03094 -12.87086 -12.71055 -12.20967 -12.14233 -11.93540 -11.90317 -11.72862 -11.62454 -11.30842 -10.98044 -10.85545 -10.72333 -10.47830 -10.33893 -10.20113 -9.81477 -9.30572 -8.03686 -5.37164 -0.55165 -0.01938 0.58455 1.08670 1.17401 1.36139 1.39996 1.46944 2.07330 2.22210 2.46887 2.69861 3.01908 3.26531 3.44160 3.50488 3.54673 3.60089 3.71538 3.80910 3.81666 3.97491 3.99535 4.04460 4.26359 4.35577 4.40906 4.43735 4.57894 4.61825 4.68835 4.74126 4.74369 4.86996 4.92415 4.96048 5.07456 5.16534 5.21692 5.30230 5.42600 5.43687 5.53126 5.74160 5.79889 6.21869 6.30089 6.64776 6.84769 7.02662 7.06882 7.83923 8.02308 9.17893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.002575 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.172984 B =10869.312704 C =13408.900329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.232 4.232 8 H 0.057 0.943 9 N -0.734 5.734 10 C 0.146 3.854 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.107 4.107 14 H 0.086 0.914 15 C 0.137 3.863 16 N -0.706 5.706 17 C 0.600 3.400 18 O -0.563 6.563 19 C -0.020 4.020 20 C -0.181 4.181 21 C 0.006 3.994 22 N -0.243 5.243 23 C 0.161 3.839 24 C -0.170 4.170 25 C 0.124 3.876 26 N -0.509 5.509 27 C 0.119 3.881 28 C -0.180 4.180 29 N -0.277 5.277 30 C -0.156 4.156 31 H 0.258 0.742 32 H 0.366 0.634 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.183 0.817 39 H 0.237 0.763 40 H 0.184 0.816 41 H 0.202 0.798 42 H 0.182 0.818 43 H 0.143 0.857 44 H 0.048 0.952 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.603 -1.268 19.227 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.376 5.376 10 C 0.036 3.964 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.126 4.126 14 H 0.104 0.896 15 C 0.015 3.985 16 N -0.356 5.356 17 C 0.385 3.615 18 O -0.441 6.441 19 C -0.182 4.182 20 C -0.208 4.208 21 C -0.133 4.133 22 N -0.025 5.025 23 C 0.063 3.937 24 C -0.192 4.192 25 C -0.033 4.033 26 N -0.219 5.219 27 C -0.037 4.037 28 C -0.202 4.202 29 N -0.110 5.110 30 C -0.196 4.196 31 H 0.067 0.933 32 H 0.200 0.800 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.200 0.800 39 H 0.253 0.747 40 H 0.201 0.799 41 H 0.219 0.781 42 H 0.199 0.801 43 H 0.161 0.839 44 H 0.067 0.933 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 27.601 -0.676 19.509 33.806 hybrid contribution 0.197 0.277 -0.816 0.884 sum 27.798 -0.399 18.693 33.501 Atomic orbital electron populations 1.69883 1.07163 1.26694 1.59718 1.25511 0.96123 1.01278 1.02729 0.85412 0.78632 0.79622 0.78114 1.20447 1.22294 1.17575 1.19072 0.82591 0.93472 1.41122 0.92499 1.42449 1.02276 1.03531 1.89303 1.21345 0.91696 0.87838 0.95508 0.92195 1.23351 0.95158 1.03184 0.95209 1.22625 0.92396 0.99660 0.97922 0.89601 1.21446 0.95063 0.98994 0.83035 1.45929 1.22137 1.46520 1.21047 1.17051 0.80969 0.80351 0.83176 1.90775 1.55860 1.35641 1.61817 1.22156 0.97786 1.01324 0.96900 1.22170 0.99110 1.04950 0.94582 1.23800 0.91918 0.95694 1.01863 1.42860 1.16158 1.31381 1.12130 1.18268 0.96242 0.91935 0.87277 1.22300 1.02458 1.02530 0.91878 1.23368 0.91914 0.89508 0.98498 1.67779 1.06102 1.23186 1.24804 1.23054 0.99109 0.94258 0.87301 1.22122 0.96702 0.98754 1.02580 1.73502 1.23354 1.18389 0.95767 1.23775 0.96645 1.00204 0.99020 0.93330 0.80027 0.87153 0.91280 0.90775 0.90795 0.75301 0.79970 0.74705 0.79923 0.78093 0.80144 0.83878 0.93299 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.23 13.97 21.65 0.30 -62.92 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 3 Si 0.96 45.19 27.73 68.60 1.90 47.10 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.63 6.52 99.48 0.65 -9.99 16 7 C -0.23 -13.15 10.45 84.03 0.88 -12.27 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 9 N -0.73 -33.52 5.11 -320.43 -1.64 -35.16 16 10 C 0.15 5.27 4.56 45.52 0.21 5.48 16 11 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 12 C -0.13 -3.51 7.38 31.12 0.23 -3.28 16 13 C -0.11 -2.79 3.64 -10.18 -0.04 -2.82 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C 0.14 3.24 5.52 86.38 0.48 3.72 16 16 N -0.71 -17.23 5.55 -466.14 -2.59 -19.81 16 17 C 0.60 16.10 7.82 86.74 0.68 16.78 16 18 O -0.56 -17.92 16.92 -3.94 -0.07 -17.99 16 19 C -0.02 -0.47 7.13 42.47 0.30 -0.16 16 20 C -0.18 -3.09 10.80 22.42 0.24 -2.84 16 21 C 0.01 0.06 10.82 83.39 0.90 0.97 16 22 N -0.24 -4.11 3.51 -186.73 -0.66 -4.77 16 23 C 0.16 2.32 6.70 38.38 0.26 2.58 16 24 C -0.17 -1.24 9.50 22.48 0.21 -1.03 16 25 C 0.12 1.01 11.18 84.63 0.95 1.95 16 26 N -0.51 -7.25 10.36 -196.05 -2.03 -9.28 16 27 C 0.12 1.69 11.17 84.63 0.95 2.63 16 28 C -0.18 -2.88 9.67 22.48 0.22 -2.66 16 29 N -0.28 -6.18 10.94 -48.15 -0.53 -6.71 16 30 C -0.16 -4.77 7.44 31.21 0.23 -4.53 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.37 15.98 5.76 -92.71 -0.53 15.44 16 33 H 0.11 2.42 8.10 -2.39 -0.02 2.40 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.75 7.85 -2.38 -0.02 1.74 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 9.56 8.19 -92.71 -0.76 8.80 16 38 H 0.18 2.54 8.06 -2.92 -0.02 2.51 16 39 H 0.24 0.12 7.04 -2.91 -0.02 0.10 16 40 H 0.18 -0.14 6.78 -2.91 -0.02 -0.16 16 41 H 0.20 0.13 8.06 -2.91 -0.02 0.11 16 42 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.14 2.52 7.74 -2.91 -0.02 2.50 16 44 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.09 2.47 7.91 -2.39 -0.02 2.45 16 Total: -1.00 -79.48 384.71 1.55 -77.94 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.31 Total: 30.47 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.16 Total: 1.14 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -7.14 Total: -138.65 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.07 Total: -17.99 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.10 kcal Total: -79.48 1.55 -77.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086425040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.485 kcal (2) G-P(sol) polarization free energy of solvation -79.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds