Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.85694 * 336.20306 * 10 9 7 12 12 C 1.53789 * 113.61148 * 107.50836 * 10 9 7 13 13 C 1.53774 * 87.08153 * 89.11305 * 12 10 9 14 14 H 1.09000 * 113.61600 * 270.88497 * 13 12 10 15 15 C 1.53004 * 113.61567 * 139.98340 * 13 12 10 16 16 N 1.46496 * 109.47237 * 87.50045 * 15 13 12 17 17 C 1.34775 * 120.00131 * 180.02562 * 16 15 13 18 18 O 1.21572 * 119.99909 * 0.02562 * 17 16 15 19 19 C 1.47673 * 120.00110 * 180.02562 * 17 16 15 20 20 C 1.39697 * 120.08094 * 359.72845 * 19 17 16 21 21 C 1.37731 * 119.91953 * 179.69920 * 20 19 17 22 22 C 1.39027 * 120.08284 * 0.57137 * 21 20 19 23 23 N 1.39921 * 119.92563 * 179.69877 * 22 21 20 24 24 C 1.36357 * 127.11819 * 179.70710 * 23 22 21 25 25 N 1.30505 * 107.19211 * 179.84165 * 24 23 22 26 26 N 1.28533 * 109.92361 * 0.43605 * 25 24 23 27 27 C 1.30509 * 109.91902 * 359.72656 * 26 25 24 28 28 C 1.39031 * 120.15633 * 359.72195 * 22 21 20 29 29 C 1.37737 * 120.08231 * 359.97438 * 28 22 21 30 30 C 1.53782 * 87.08386 * 25.43333 * 13 12 10 31 31 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 33 33 H 1.08997 * 113.61385 * 203.66677 * 12 10 9 34 34 H 1.09000 * 113.61141 * 334.56715 * 12 10 9 35 35 H 1.09002 * 109.47402 * 207.50665 * 15 13 12 36 36 H 1.09004 * 109.46602 * 327.50196 * 15 13 12 37 37 H 0.96996 * 119.99908 * 0.02562 * 16 15 13 38 38 H 1.08005 * 120.04265 * 359.97093 * 20 19 17 39 39 H 1.08000 * 119.96290 * 180.29578 * 21 20 19 40 40 H 1.07993 * 126.39889 * 359.96587 * 24 23 22 41 41 H 1.07998 * 126.40147 * 179.97438 * 27 26 25 42 42 H 1.08001 * 119.95881 * 179.97438 * 28 22 21 43 43 H 1.07998 * 120.04081 * 179.97438 * 29 28 22 44 44 H 1.08993 * 113.61721 * 220.01636 * 30 13 12 45 45 H 1.09007 * 113.68952 * 89.12662 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0656 -3.5638 -0.4047 12 6 1.9989 -4.4021 1.3444 13 6 0.7204 -5.0790 0.8231 14 1 -0.1903 -4.5239 1.0479 15 6 0.6194 -6.5616 1.1877 16 7 -0.0125 -6.6993 2.5021 17 6 -0.2064 -7.9233 3.0317 18 8 0.1435 -8.9132 2.4188 19 6 -0.8440 -8.0622 4.3565 20 6 -1.2416 -6.9256 5.0648 21 6 -1.8415 -7.0592 6.2973 22 6 -2.0408 -8.3227 6.8421 23 7 -2.6449 -8.4543 8.0973 24 6 -2.9147 -9.6132 8.7632 25 7 -3.4763 -9.2861 9.8949 26 7 -3.5836 -8.0079 9.9773 27 6 -3.0910 -7.4503 8.9050 28 6 -1.6408 -9.4558 6.1428 29 6 -1.0459 -9.3302 4.9069 30 6 1.2602 -4.8288 -0.5950 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0042 33 1 2.8278 -5.0933 1.4971 34 1 1.8290 -3.7478 2.1995 35 1 0.0191 -7.0796 0.4398 36 1 1.6182 -6.9972 1.2173 37 1 -0.2914 -5.9095 2.9913 38 1 -1.0828 -5.9435 4.6444 39 1 -2.1536 -6.1812 6.8434 40 1 -2.7016 -10.6145 8.4192 41 1 -3.0455 -6.3917 8.6963 42 1 -1.7968 -10.4358 6.5692 43 1 -0.7351 -10.2108 4.3645 44 1 0.4939 -4.5190 -1.3055 45 1 1.8871 -5.6361 -0.9738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086504429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 111.886542 kcal Electronic energy + Delta-G solvation = -27402.689027 eV Core-core repulsion = 23422.921198 eV Total energy + Delta-G solvation = -3979.767829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.76811 -40.68307 -39.27712 -38.46341 -35.43852 -34.91834 -33.33283 -32.12475 -31.03115 -30.87157 -30.07683 -27.53281 -25.23221 -25.12006 -24.28345 -23.75419 -22.71835 -21.92119 -21.57532 -20.81488 -19.42354 -18.68776 -17.97845 -17.28817 -16.71740 -16.51285 -16.32746 -15.66207 -15.56136 -15.28954 -14.98363 -14.76443 -14.52815 -14.26510 -14.20952 -13.84084 -13.75453 -13.33488 -13.28595 -12.96066 -12.39005 -12.07094 -12.02045 -11.84898 -11.74064 -11.48768 -11.11915 -11.02354 -10.91357 -10.59246 -10.39794 -10.22658 -10.04075 -9.95916 -9.82776 -9.77082 -9.58629 -9.31140 -9.06794 -8.96024 -7.08098 -5.88237 -3.17482 -0.17083 0.58212 1.35453 1.74634 2.33607 2.45581 2.90451 3.27592 3.36590 3.42354 3.43560 3.74404 3.87709 4.00081 4.13238 4.26202 4.41349 4.49143 4.54481 4.63549 4.85789 4.93032 4.96537 4.99413 5.12607 5.19155 5.37434 5.40849 5.41944 5.50170 5.58237 5.63349 5.68917 5.76796 5.84996 5.89287 5.99572 6.11964 6.22792 6.28342 6.36664 6.49055 6.64445 6.79417 6.94596 7.26775 7.62187 7.93496 8.10222 8.30917 9.41815 9.98657 10.32756 11.34058 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.001902 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.801410 B =14717.681358 C =16569.286257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.121 4.121 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.716 5.716 17 C 0.554 3.446 18 O -0.538 6.538 19 C -0.130 4.130 20 C -0.056 4.056 21 C -0.133 4.133 22 C 0.150 3.850 23 N -0.432 5.432 24 C 0.161 3.839 25 N -0.290 5.290 26 N -0.290 5.290 27 C 0.163 3.837 28 C -0.136 4.136 29 C -0.032 4.032 30 C -0.148 4.148 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.224 0.776 41 H 0.225 0.775 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -19.449 11.959 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.367 5.367 17 C 0.340 3.660 18 O -0.417 6.417 19 C -0.134 4.134 20 C -0.075 4.075 21 C -0.152 4.152 22 C 0.056 3.944 23 N -0.119 5.119 24 C -0.125 4.125 25 N -0.127 5.127 26 N -0.126 5.126 27 C -0.123 4.123 28 C -0.156 4.156 29 C -0.052 4.052 30 C -0.187 4.187 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.240 0.760 41 H 0.241 0.759 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.270 -20.102 12.943 24.287 hybrid contribution 0.529 1.487 -0.975 1.856 sum -3.742 -18.615 11.968 22.444 Atomic orbital electron populations 1.69655 1.05140 1.25841 1.57400 1.24765 0.95553 0.97821 1.02701 0.86171 0.78665 0.83625 0.77599 1.21625 1.21737 1.20694 1.19290 0.91137 0.83948 1.43076 0.90972 1.42165 1.05655 0.99428 1.87140 1.21057 0.95177 0.85602 0.92706 0.91895 1.23903 0.95611 0.99650 1.01834 1.22726 0.99635 0.92738 0.98830 0.88849 1.21561 0.97746 0.97301 0.82669 1.46010 1.61569 1.07791 1.21300 1.18102 0.79029 0.83700 0.85138 1.90793 1.51293 1.37448 1.62123 1.20182 1.03035 0.94277 0.95916 1.21287 0.94314 0.98804 0.93140 1.20809 1.02152 0.95336 0.96952 1.17931 0.97226 0.95619 0.83621 1.44330 1.44164 1.08268 1.15160 1.26846 1.01401 0.93132 0.91122 1.74269 1.16434 1.06143 1.15826 1.74279 1.18380 1.00729 1.19245 1.26893 0.99544 0.97270 0.88584 1.20834 1.01748 0.97311 0.95663 1.21174 0.93241 0.97585 0.93173 1.23447 1.00529 0.99750 0.95012 0.93411 0.78134 0.91351 0.91503 0.91487 0.91232 0.76264 0.83907 0.84087 0.75989 0.75880 0.84209 0.83207 0.91264 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -16.49 5.31 -52.63 -0.28 -16.77 16 10 C 0.17 3.04 4.56 -67.12 -0.31 2.73 16 11 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 12 C -0.17 -2.54 7.43 -25.92 -0.19 -2.74 16 13 C -0.12 -1.60 3.63 -89.81 -0.33 -1.92 16 14 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.13 1.52 5.51 -4.04 -0.02 1.49 16 16 N -0.72 -7.31 5.51 -61.30 -0.34 -7.64 16 17 C 0.55 6.13 7.77 -12.41 -0.10 6.03 16 18 O -0.54 -7.77 16.34 5.30 0.09 -7.68 16 19 C -0.13 -1.07 5.87 -104.95 -0.62 -1.68 16 20 C -0.06 -0.35 9.53 -39.22 -0.37 -0.72 16 21 C -0.13 -0.72 9.46 -39.47 -0.37 -1.09 16 22 C 0.15 0.90 6.65 -83.58 -0.56 0.34 16 23 N -0.43 -2.92 2.99 -63.17 -0.19 -3.11 16 24 C 0.16 1.14 12.06 -89.16 -1.08 0.06 16 25 N -0.29 -3.11 12.19 29.85 0.36 -2.75 16 26 N -0.29 -3.15 12.19 29.85 0.36 -2.78 16 27 C 0.16 1.20 12.06 -89.16 -1.08 0.12 16 28 C -0.14 -0.73 9.47 -39.47 -0.37 -1.10 16 29 C -0.03 -0.23 9.58 -39.22 -0.38 -0.60 16 30 C -0.15 -2.17 7.39 -25.92 -0.19 -2.36 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.38 9.50 7.90 -40.82 -0.32 9.18 16 33 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 37 H 0.40 3.33 6.50 -40.82 -0.27 3.07 16 38 H 0.14 0.66 6.40 -52.48 -0.34 0.33 16 39 H 0.14 0.44 6.84 -52.49 -0.36 0.08 16 40 H 0.22 0.62 7.17 -52.49 -0.38 0.24 16 41 H 0.22 0.74 7.17 -52.49 -0.38 0.37 16 42 H 0.14 0.39 6.84 -52.49 -0.36 0.03 16 43 H 0.15 1.02 7.64 -52.49 -0.40 0.62 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -34.70 382.02 -10.42 -45.13 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.69 Total: 7.98 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -6.20 Total: -8.46 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.65 Total: -59.24 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.70 -10.42 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086504429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.013 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds