Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.85694 * 336.20306 * 10 9 7 12 12 C 1.53789 * 113.61148 * 107.50836 * 10 9 7 13 13 C 1.53774 * 87.08153 * 89.11305 * 12 10 9 14 14 H 1.09000 * 113.61600 * 270.88497 * 13 12 10 15 15 C 1.53004 * 113.61567 * 139.98340 * 13 12 10 16 16 N 1.46496 * 109.47237 * 87.50045 * 15 13 12 17 17 C 1.34775 * 120.00131 * 180.02562 * 16 15 13 18 18 O 1.21572 * 119.99909 * 0.02562 * 17 16 15 19 19 C 1.47673 * 120.00110 * 180.02562 * 17 16 15 20 20 C 1.39697 * 120.08094 * 359.72845 * 19 17 16 21 21 C 1.37731 * 119.91953 * 179.69920 * 20 19 17 22 22 C 1.39027 * 120.08284 * 0.57137 * 21 20 19 23 23 N 1.39921 * 119.92563 * 179.69877 * 22 21 20 24 24 C 1.36357 * 127.11819 * 179.70710 * 23 22 21 25 25 N 1.30505 * 107.19211 * 179.84165 * 24 23 22 26 26 N 1.28533 * 109.92361 * 0.43605 * 25 24 23 27 27 C 1.30509 * 109.91902 * 359.72656 * 26 25 24 28 28 C 1.39031 * 120.15633 * 359.72195 * 22 21 20 29 29 C 1.37737 * 120.08231 * 359.97438 * 28 22 21 30 30 C 1.53782 * 87.08386 * 25.43333 * 13 12 10 31 31 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 33 33 H 1.08997 * 113.61385 * 203.66677 * 12 10 9 34 34 H 1.09000 * 113.61141 * 334.56715 * 12 10 9 35 35 H 1.09002 * 109.47402 * 207.50665 * 15 13 12 36 36 H 1.09004 * 109.46602 * 327.50196 * 15 13 12 37 37 H 0.96996 * 119.99908 * 0.02562 * 16 15 13 38 38 H 1.08005 * 120.04265 * 359.97093 * 20 19 17 39 39 H 1.08000 * 119.96290 * 180.29578 * 21 20 19 40 40 H 1.07993 * 126.39889 * 359.96587 * 24 23 22 41 41 H 1.07998 * 126.40147 * 179.97438 * 27 26 25 42 42 H 1.08001 * 119.95881 * 179.97438 * 28 22 21 43 43 H 1.07998 * 120.04081 * 179.97438 * 29 28 22 44 44 H 1.08993 * 113.61721 * 220.01636 * 30 13 12 45 45 H 1.09007 * 113.68952 * 89.12662 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0656 -3.5638 -0.4047 12 6 1.9989 -4.4021 1.3444 13 6 0.7204 -5.0790 0.8231 14 1 -0.1903 -4.5239 1.0479 15 6 0.6194 -6.5616 1.1877 16 7 -0.0125 -6.6993 2.5021 17 6 -0.2064 -7.9233 3.0317 18 8 0.1435 -8.9132 2.4188 19 6 -0.8440 -8.0622 4.3565 20 6 -1.2416 -6.9256 5.0648 21 6 -1.8415 -7.0592 6.2973 22 6 -2.0408 -8.3227 6.8421 23 7 -2.6449 -8.4543 8.0973 24 6 -2.9147 -9.6132 8.7632 25 7 -3.4763 -9.2861 9.8949 26 7 -3.5836 -8.0079 9.9773 27 6 -3.0910 -7.4503 8.9050 28 6 -1.6408 -9.4558 6.1428 29 6 -1.0459 -9.3302 4.9069 30 6 1.2602 -4.8288 -0.5950 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0042 33 1 2.8278 -5.0933 1.4971 34 1 1.8290 -3.7478 2.1995 35 1 0.0191 -7.0796 0.4398 36 1 1.6182 -6.9972 1.2173 37 1 -0.2914 -5.9095 2.9913 38 1 -1.0828 -5.9435 4.6444 39 1 -2.1536 -6.1812 6.8434 40 1 -2.7016 -10.6145 8.4192 41 1 -3.0455 -6.3917 8.6963 42 1 -1.7968 -10.4358 6.5692 43 1 -0.7351 -10.2108 4.3645 44 1 0.4939 -4.5190 -1.3055 45 1 1.8871 -5.6361 -0.9738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086504429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 91.749976 kcal Electronic energy + Delta-G solvation = -27403.562214 eV Core-core repulsion = 23422.921198 eV Total energy + Delta-G solvation = -3980.641016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.32381 -41.39274 -40.21978 -39.46543 -36.08441 -36.00477 -34.99254 -32.64296 -32.15127 -31.52130 -31.23723 -28.64370 -26.41641 -26.02985 -25.42843 -24.76013 -23.47654 -22.94480 -22.17133 -21.56259 -20.00322 -19.79364 -19.34509 -18.69701 -17.33087 -17.27662 -16.84595 -16.70904 -16.46256 -16.17918 -16.02827 -15.76734 -15.47580 -15.25593 -14.97361 -14.78298 -14.63303 -14.52858 -14.16476 -13.98971 -13.70312 -13.27304 -12.93779 -12.90207 -12.68729 -12.64784 -12.30387 -12.28323 -12.14634 -12.04945 -11.60213 -11.57517 -11.46422 -11.14210 -10.90179 -10.76538 -10.64554 -10.25398 -10.16370 -9.66137 -8.98243 -7.94734 -5.22379 -0.69204 0.15549 0.82123 1.26298 1.49146 1.49829 1.58098 1.74160 1.79323 2.10933 2.56436 2.69470 3.30126 3.38116 3.46724 3.58498 3.60575 3.73494 3.77499 3.80540 3.87674 3.97927 4.08612 4.15898 4.18700 4.34727 4.42262 4.45613 4.50388 4.73528 4.77255 4.80444 4.91897 4.95481 4.96239 5.02149 5.12974 5.14549 5.22708 5.26758 5.36760 5.43040 5.49299 5.55989 5.68173 5.91209 6.29285 6.47346 7.12292 7.34660 7.52674 8.12148 8.34195 9.28297 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.001902 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.801410 B =14717.681358 C =16569.286257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.141 3.859 11 H 0.058 0.942 12 C -0.153 4.153 13 C -0.101 4.101 14 H 0.084 0.916 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.553 3.447 18 O -0.578 6.578 19 C -0.147 4.147 20 C -0.054 4.054 21 C -0.130 4.130 22 C 0.147 3.853 23 N -0.433 5.433 24 C 0.171 3.829 25 N -0.337 5.337 26 N -0.337 5.337 27 C 0.171 3.829 28 C -0.128 4.128 29 C -0.039 4.039 30 C -0.136 4.136 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.260 0.740 41 H 0.258 0.742 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.057 0.943 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -20.253 12.535 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.031 3.969 11 H 0.076 0.924 12 C -0.193 4.193 13 C -0.120 4.120 14 H 0.102 0.898 15 C 0.016 3.984 16 N -0.362 5.362 17 C 0.342 3.658 18 O -0.459 6.459 19 C -0.151 4.151 20 C -0.074 4.074 21 C -0.150 4.150 22 C 0.054 3.946 23 N -0.119 5.119 24 C -0.116 4.116 25 N -0.173 5.173 26 N -0.173 5.173 27 C -0.116 4.116 28 C -0.148 4.148 29 C -0.059 4.059 30 C -0.175 4.175 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.276 0.724 41 H 0.274 0.726 42 H 0.184 0.816 43 H 0.165 0.835 44 H 0.076 0.924 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.590 -20.933 13.543 25.189 hybrid contribution 0.376 1.655 -1.173 2.063 sum -3.214 -19.278 12.370 23.130 Atomic orbital electron populations 1.69796 1.06452 1.26008 1.59542 1.25507 0.96369 1.00907 1.03865 0.85190 0.77772 0.79785 0.77307 1.21690 1.22298 1.19498 1.19657 0.91498 0.85216 1.40922 0.90648 1.42282 1.05321 1.00483 1.87616 1.21405 0.95041 0.84952 0.95467 0.92381 1.23709 0.97308 0.99194 0.99094 1.22493 0.98406 0.93639 0.97464 0.89759 1.21351 0.97987 0.95620 0.83469 1.45932 1.61217 1.08241 1.20837 1.18514 0.78345 0.83086 0.85870 1.90768 1.53148 1.38593 1.63428 1.20058 1.04473 0.95591 0.94979 1.21411 0.93930 0.98746 0.93278 1.21083 1.01199 0.96103 0.96577 1.18074 0.97087 0.96170 0.83279 1.44397 1.44106 1.08138 1.15292 1.27549 0.99448 0.94546 0.90019 1.74175 1.18627 1.06484 1.17994 1.74186 1.20517 1.01232 1.21351 1.27537 0.97833 0.98651 0.87592 1.21051 1.00462 0.98511 0.94772 1.21221 0.93680 0.97135 0.93834 1.23354 0.99979 0.98645 0.95518 0.94051 0.79288 0.89074 0.93091 0.91600 0.91139 0.75111 0.82583 0.81659 0.72395 0.72593 0.81553 0.83514 0.92435 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.71 13.06 21.65 0.28 -56.43 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -12.76 9.97 84.03 0.84 -11.92 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -33.75 5.31 -320.43 -1.70 -35.45 16 10 C 0.14 5.03 4.56 45.52 0.21 5.24 16 11 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 12 C -0.15 -4.35 7.43 31.12 0.23 -4.12 16 13 C -0.10 -2.53 3.63 -10.27 -0.04 -2.57 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.14 2.99 5.51 86.38 0.48 3.47 16 16 N -0.71 -13.42 5.51 -466.14 -2.57 -15.98 16 17 C 0.55 11.63 7.77 86.74 0.67 12.31 16 18 O -0.58 -16.38 16.34 -3.94 -0.06 -16.45 16 19 C -0.15 -2.18 5.87 -20.08 -0.12 -2.30 16 20 C -0.05 -0.55 9.53 22.50 0.21 -0.33 16 21 C -0.13 -1.01 9.46 22.34 0.21 -0.80 16 22 C 0.15 1.34 6.65 38.23 0.25 1.60 16 23 N -0.43 -4.76 2.99 -353.76 -1.06 -5.82 16 24 C 0.17 2.06 12.06 179.84 2.17 4.23 16 25 N -0.34 -7.00 12.19 -59.47 -0.73 -7.72 16 26 N -0.34 -7.12 12.19 -59.46 -0.73 -7.84 16 27 C 0.17 2.16 12.06 179.84 2.17 4.33 16 28 C -0.13 -1.03 9.47 22.34 0.21 -0.82 16 29 C -0.04 -0.48 9.58 22.50 0.22 -0.27 16 30 C -0.14 -3.78 7.39 31.12 0.23 -3.55 16 31 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 32 H 0.37 18.82 7.90 -92.71 -0.73 18.09 16 33 H 0.09 2.21 7.90 -2.39 -0.02 2.19 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.55 7.84 -2.39 -0.02 1.53 16 37 H 0.41 6.09 6.50 -92.71 -0.60 5.49 16 38 H 0.16 1.06 6.40 -2.91 -0.02 1.04 16 39 H 0.17 0.41 6.84 -2.91 -0.02 0.39 16 40 H 0.26 0.62 7.17 -2.91 -0.02 0.60 16 41 H 0.26 0.95 7.17 -2.91 -0.02 0.93 16 42 H 0.17 0.34 6.84 -2.91 -0.02 0.32 16 43 H 0.15 1.87 7.64 -2.91 -0.02 1.85 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.10 2.38 8.10 -2.38 -0.02 2.36 16 Total: -1.00 -77.03 382.02 3.60 -73.43 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.28 Total: 24.87 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 8.41 Total: 0.88 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -6.49 Total: -129.24 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.06 Total: -16.45 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -77.03 3.60 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086504429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.176 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds