Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47230 * 270.00137 * 3 2 1 5 5 H 1.48499 * 109.47186 * 30.00193 * 3 2 1 6 6 H 1.48499 * 109.46919 * 150.00071 * 3 2 1 7 7 C 1.38816 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00090 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84724 * 23.80824 * 10 9 7 12 12 C 1.53779 * 113.61395 * 155.00129 * 10 9 7 13 13 C 1.53781 * 87.07985 * 89.12209 * 12 10 9 14 14 H 1.09002 * 113.61053 * 270.79727 * 13 12 10 15 15 C 1.52996 * 113.61615 * 139.98081 * 13 12 10 16 16 N 1.46505 * 109.47226 * 174.99396 * 15 13 12 17 17 C 1.34775 * 120.00000 * 179.97438 * 16 15 13 18 18 O 1.21514 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.48177 * 119.99815 * 180.02562 * 17 16 15 20 20 C 1.39125 * 119.69656 * 180.02562 * 19 17 16 21 21 C 1.39270 * 118.98202 * 180.02562 * 20 19 17 22 22 N 1.39965 * 120.82357 * 179.97438 * 21 20 19 23 23 C 1.37149 * 126.48334 * 180.02562 * 22 21 20 24 24 C 1.34627 * 106.83497 * 179.97438 * 23 22 21 25 25 N 1.34150 * 108.20533 * 0.02562 * 24 23 22 26 26 C 1.30488 * 109.36916 * 359.74201 * 25 24 23 27 27 C 1.39275 * 118.35625 * 359.97438 * 21 20 19 28 28 C 1.38336 * 119.27821 * 0.02562 * 27 21 20 29 29 N 1.31599 * 120.97606 * 359.97438 * 28 27 21 30 30 C 1.53776 * 113.61727 * 252.50181 * 10 9 7 31 31 H 0.97000 * 120.00180 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00017 * 0.02562 * 9 7 2 33 33 H 1.08993 * 113.61668 * 334.56979 * 12 10 9 34 34 H 1.09003 * 113.61150 * 203.66282 * 12 10 9 35 35 H 1.08998 * 109.47238 * 54.99848 * 15 13 12 36 36 H 1.08998 * 109.47448 * 294.99772 * 15 13 12 37 37 H 0.96997 * 120.00057 * 0.02562 * 16 15 13 38 38 H 1.08003 * 120.50970 * 0.02562 * 20 19 17 39 39 H 1.08004 * 126.58855 * 359.97347 * 23 22 21 40 40 H 1.07998 * 125.90103 * 180.02562 * 24 23 22 41 41 H 1.08002 * 125.72626 * 180.25084 * 26 25 24 42 42 H 1.07997 * 120.35847 * 179.72365 * 27 21 20 43 43 H 1.07996 * 119.51482 * 179.97438 * 28 27 21 44 44 H 1.08996 * 113.61685 * 156.33462 * 30 10 9 45 45 H 1.09004 * 113.61569 * 25.43160 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0655 -3.5639 0.4049 12 6 1.2601 -4.8288 0.5949 13 6 0.7205 -5.0791 -0.8232 14 1 -0.1910 -4.5251 -1.0476 15 6 0.6197 -6.5616 -1.1878 16 7 -0.0122 -6.6994 -2.5024 17 6 -0.2060 -7.9235 -3.0320 18 8 0.1430 -8.9129 -2.4189 19 6 -0.8445 -8.0627 -4.3618 20 6 -1.0420 -9.3294 -4.9023 21 6 -1.6431 -9.4430 -6.1535 22 7 -1.8598 -10.6981 -6.7337 23 6 -2.4380 -10.9440 -7.9528 24 6 -2.4483 -12.2802 -8.1170 25 7 -1.8937 -12.8402 -7.0314 26 6 -1.5325 -11.9034 -6.1980 27 6 -2.0232 -8.2767 -6.8130 28 6 -1.7933 -7.0529 -6.2103 29 7 -1.2230 -6.9774 -5.0267 30 6 1.9992 -4.4022 -1.3443 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 0.4937 -4.5190 1.3053 34 1 1.8869 -5.6367 0.9724 35 1 0.0192 -7.0796 -0.4400 36 1 1.6184 -6.9973 -1.2172 37 1 -0.2904 -5.9096 -2.9919 38 1 -0.7339 -10.2111 -4.3600 39 1 -2.8131 -10.2073 -8.6478 40 1 -2.8360 -12.8099 -8.9746 41 1 -1.0556 -12.0597 -5.2416 42 1 -2.4879 -8.3269 -7.7866 43 1 -2.0862 -6.1462 -6.7185 44 1 2.8280 -5.0934 -1.4969 45 1 1.8294 -3.7479 -2.1995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086524867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 105.691784 kcal Electronic energy + Delta-G solvation = -27484.578837 eV Core-core repulsion = 23504.542383 eV Total energy + Delta-G solvation = -3980.036454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93675 -40.96988 -39.44699 -38.44524 -35.50286 -34.75297 -33.23997 -32.26745 -31.15061 -30.19212 -29.98627 -27.68184 -25.17307 -25.04918 -24.69881 -23.66207 -22.38013 -21.69876 -21.43516 -20.77000 -19.45181 -18.35848 -17.49962 -17.28485 -16.80909 -16.54707 -16.21746 -15.78600 -15.59190 -15.18633 -14.96758 -14.77432 -14.42740 -14.41250 -14.30749 -13.98715 -13.89996 -13.62482 -13.23032 -12.90893 -12.58257 -12.31674 -11.94433 -11.81305 -11.43404 -11.06982 -10.87137 -10.80852 -10.61774 -10.51309 -10.21809 -10.16300 -9.92334 -9.88034 -9.71046 -9.64888 -9.51133 -9.12064 -9.08646 -8.90405 -7.02002 -5.82570 -3.11574 -0.06998 0.21301 1.64083 1.90300 2.41571 2.58732 2.85829 3.35344 3.40381 3.45920 3.47418 3.65710 3.89505 3.94090 4.08962 4.25006 4.34999 4.54038 4.67358 4.81292 4.87322 4.95822 5.01759 5.02182 5.08366 5.14795 5.21473 5.43390 5.58834 5.64319 5.66681 5.75823 5.82581 5.91781 6.06625 6.10361 6.18724 6.29876 6.35492 6.54238 6.56212 6.73336 6.86742 7.02488 7.07362 7.40133 7.43146 7.67359 7.96856 8.36543 9.47341 10.04859 10.39046 11.39808 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.001759 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.715847 B =15914.022761 C =16862.461802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.095 0.905 15 C 0.128 3.872 16 N -0.697 5.697 17 C 0.566 3.434 18 O -0.535 6.535 19 C 0.117 3.883 20 C -0.132 4.132 21 C 0.176 3.824 22 N -0.416 5.416 23 C -0.053 4.053 24 C -0.017 4.017 25 N -0.481 5.481 26 C 0.199 3.801 27 C -0.170 4.170 28 C 0.133 3.867 29 N -0.460 5.460 30 C -0.168 4.168 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.157 0.843 39 H 0.182 0.818 40 H 0.178 0.822 41 H 0.214 0.786 42 H 0.149 0.851 43 H 0.177 0.823 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -20.931 -15.940 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.005 3.995 16 N -0.347 5.347 17 C 0.349 3.651 18 O -0.412 6.412 19 C -0.022 4.022 20 C -0.155 4.155 21 C 0.074 3.926 22 N -0.096 5.096 23 C -0.182 4.182 24 C -0.162 4.162 25 N -0.197 5.197 26 C -0.082 4.082 27 C -0.193 4.193 28 C -0.026 4.026 29 N -0.172 5.172 30 C -0.210 4.210 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.251 0.749 38 H 0.175 0.825 39 H 0.199 0.801 40 H 0.195 0.805 41 H 0.230 0.770 42 H 0.166 0.834 43 H 0.194 0.806 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.162 -21.429 -14.905 26.608 hybrid contribution -0.414 1.315 -1.016 1.712 sum -5.576 -20.114 -15.920 26.251 Atomic orbital electron populations 1.69656 1.05132 1.25779 1.57450 1.24758 0.95534 0.97775 1.02771 0.86172 0.78681 0.83701 0.77519 1.21705 1.21760 1.20696 1.19292 0.91131 0.83979 1.42979 0.90987 1.42166 1.05680 0.99419 1.87125 1.21055 0.95124 0.85602 0.92744 0.91930 1.23449 1.00507 0.99727 0.95030 1.22721 0.99769 0.92676 0.98691 0.88724 1.21618 0.97737 0.97509 0.82616 1.45937 1.59844 1.08112 1.20797 1.17725 0.79255 0.84161 0.83928 1.90800 1.51488 1.37684 1.61218 1.21135 0.97119 0.88534 0.95436 1.21755 0.99718 1.00179 0.93875 1.17949 0.97361 0.84161 0.93081 1.43220 1.45007 1.05361 1.16052 1.22844 1.06788 0.99328 0.89249 1.22458 1.04174 0.90886 0.98702 1.70390 1.15112 1.31267 1.02963 1.25524 1.03116 0.78252 1.01344 1.22126 1.03072 0.91747 1.02315 1.22813 0.92534 0.97180 0.90103 1.67674 1.09481 1.31692 1.08386 1.23895 0.95564 0.99658 1.01836 0.93446 0.78103 0.91262 0.90417 0.91382 0.91144 0.74893 0.82505 0.80129 0.80478 0.76986 0.83354 0.80639 0.91400 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.06 5.31 -52.64 -0.28 -17.34 16 10 C 0.17 3.18 4.56 -67.12 -0.31 2.87 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 13 C -0.12 -1.73 3.63 -89.81 -0.33 -2.06 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 16 N -0.70 -8.61 5.55 -61.14 -0.34 -8.95 16 17 C 0.57 7.24 7.81 -12.18 -0.10 7.14 16 18 O -0.53 -8.08 16.32 5.35 0.09 -7.99 16 19 C 0.12 1.23 6.75 -83.04 -0.56 0.67 16 20 C -0.13 -1.18 9.06 -38.87 -0.35 -1.54 16 21 C 0.18 1.33 6.67 -83.37 -0.56 0.78 16 22 N -0.42 -3.17 2.99 -61.91 -0.18 -3.36 16 23 C -0.05 -0.34 10.89 -16.45 -0.18 -0.52 16 24 C -0.02 -0.13 11.85 -17.82 -0.21 -0.34 16 25 N -0.48 -4.76 11.24 -14.47 -0.16 -4.92 16 26 C 0.20 1.66 11.95 -89.60 -1.07 0.59 16 27 C -0.17 -0.98 9.55 -39.16 -0.37 -1.35 16 28 C 0.13 0.88 11.17 -17.61 -0.20 0.68 16 29 N -0.46 -4.44 9.54 -9.87 -0.09 -4.54 16 30 C -0.17 -2.73 7.43 -25.92 -0.19 -2.92 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.38 9.85 7.90 -40.82 -0.32 9.53 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.91 7.84 -51.93 -0.41 0.51 16 37 H 0.41 4.89 7.80 -40.82 -0.32 4.58 16 38 H 0.16 1.29 6.49 -52.48 -0.34 0.95 16 39 H 0.18 0.52 7.23 -52.48 -0.38 0.14 16 40 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.21 1.22 7.15 -52.49 -0.38 0.85 16 42 H 0.15 0.42 6.94 -52.49 -0.36 0.05 16 43 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -33.77 384.83 -10.19 -43.96 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.84 Total: 11.18 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -4.88 Total: -4.02 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -0.34 Total: -65.86 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.77 -10.19 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086524867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.651 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds