Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47230 * 270.00137 * 3 2 1 5 5 H 1.48499 * 109.47186 * 30.00193 * 3 2 1 6 6 H 1.48499 * 109.46919 * 150.00071 * 3 2 1 7 7 C 1.38816 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00090 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84724 * 23.80824 * 10 9 7 12 12 C 1.53779 * 113.61395 * 155.00129 * 10 9 7 13 13 C 1.53781 * 87.07985 * 89.12209 * 12 10 9 14 14 H 1.09002 * 113.61053 * 270.79727 * 13 12 10 15 15 C 1.52996 * 113.61615 * 139.98081 * 13 12 10 16 16 N 1.46505 * 109.47226 * 174.99396 * 15 13 12 17 17 C 1.34775 * 120.00000 * 179.97438 * 16 15 13 18 18 O 1.21514 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.48177 * 119.99815 * 180.02562 * 17 16 15 20 20 C 1.39125 * 119.69656 * 180.02562 * 19 17 16 21 21 C 1.39270 * 118.98202 * 180.02562 * 20 19 17 22 22 N 1.39965 * 120.82357 * 179.97438 * 21 20 19 23 23 C 1.37149 * 126.48334 * 180.02562 * 22 21 20 24 24 C 1.34627 * 106.83497 * 179.97438 * 23 22 21 25 25 N 1.34150 * 108.20533 * 0.02562 * 24 23 22 26 26 C 1.30488 * 109.36916 * 359.74201 * 25 24 23 27 27 C 1.39275 * 118.35625 * 359.97438 * 21 20 19 28 28 C 1.38336 * 119.27821 * 0.02562 * 27 21 20 29 29 N 1.31599 * 120.97606 * 359.97438 * 28 27 21 30 30 C 1.53776 * 113.61727 * 252.50181 * 10 9 7 31 31 H 0.97000 * 120.00180 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00017 * 0.02562 * 9 7 2 33 33 H 1.08993 * 113.61668 * 334.56979 * 12 10 9 34 34 H 1.09003 * 113.61150 * 203.66282 * 12 10 9 35 35 H 1.08998 * 109.47238 * 54.99848 * 15 13 12 36 36 H 1.08998 * 109.47448 * 294.99772 * 15 13 12 37 37 H 0.96997 * 120.00057 * 0.02562 * 16 15 13 38 38 H 1.08003 * 120.50970 * 0.02562 * 20 19 17 39 39 H 1.08004 * 126.58855 * 359.97347 * 23 22 21 40 40 H 1.07998 * 125.90103 * 180.02562 * 24 23 22 41 41 H 1.08002 * 125.72626 * 180.25084 * 26 25 24 42 42 H 1.07997 * 120.35847 * 179.72365 * 27 21 20 43 43 H 1.07996 * 119.51482 * 179.97438 * 28 27 21 44 44 H 1.08996 * 113.61685 * 156.33462 * 30 10 9 45 45 H 1.09004 * 113.61569 * 25.43160 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0655 -3.5639 0.4049 12 6 1.2601 -4.8288 0.5949 13 6 0.7205 -5.0791 -0.8232 14 1 -0.1910 -4.5251 -1.0476 15 6 0.6197 -6.5616 -1.1878 16 7 -0.0122 -6.6994 -2.5024 17 6 -0.2060 -7.9235 -3.0320 18 8 0.1430 -8.9129 -2.4189 19 6 -0.8445 -8.0627 -4.3618 20 6 -1.0420 -9.3294 -4.9023 21 6 -1.6431 -9.4430 -6.1535 22 7 -1.8598 -10.6981 -6.7337 23 6 -2.4380 -10.9440 -7.9528 24 6 -2.4483 -12.2802 -8.1170 25 7 -1.8937 -12.8402 -7.0314 26 6 -1.5325 -11.9034 -6.1980 27 6 -2.0232 -8.2767 -6.8130 28 6 -1.7933 -7.0529 -6.2103 29 7 -1.2230 -6.9774 -5.0267 30 6 1.9992 -4.4022 -1.3443 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 0.4937 -4.5190 1.3053 34 1 1.8869 -5.6367 0.9724 35 1 0.0192 -7.0796 -0.4400 36 1 1.6184 -6.9973 -1.2172 37 1 -0.2904 -5.9096 -2.9919 38 1 -0.7339 -10.2111 -4.3600 39 1 -2.8131 -10.2073 -8.6478 40 1 -2.8360 -12.8099 -8.9746 41 1 -1.0556 -12.0597 -5.2416 42 1 -2.4879 -8.3269 -7.7866 43 1 -2.0862 -6.1462 -6.7185 44 1 2.8280 -5.0934 -1.4969 45 1 1.8294 -3.7479 -2.1995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086524867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 84.269388 kcal Electronic energy + Delta-G solvation = -27485.507782 eV Core-core repulsion = 23504.542383 eV Total energy + Delta-G solvation = -3980.965398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.47733 -41.69663 -40.47313 -39.66826 -36.22182 -35.92194 -34.95550 -32.92338 -32.09076 -31.65391 -30.53338 -28.90804 -26.42249 -26.11893 -25.47756 -25.17689 -23.30083 -22.72662 -22.03073 -21.52645 -20.29168 -19.62027 -19.28661 -18.15519 -17.68158 -17.09214 -16.87081 -16.74587 -16.61118 -16.47792 -15.95351 -15.81029 -15.51599 -15.24228 -15.05704 -14.94913 -14.88842 -14.63506 -14.41531 -14.34750 -13.73740 -13.27800 -13.12732 -12.93287 -12.91466 -12.62616 -12.42989 -12.15805 -12.06710 -11.72568 -11.48700 -11.39492 -11.25344 -10.96278 -10.85212 -10.72680 -10.55132 -10.23141 -10.09119 -9.63293 -8.98456 -7.94158 -5.22228 -0.68505 -0.37056 1.08660 1.35712 1.48977 1.49892 1.58449 1.63349 1.99092 2.01851 2.56795 2.66691 2.97832 3.31554 3.38624 3.41706 3.61071 3.72450 3.75864 3.77745 3.79401 3.86950 4.09585 4.15882 4.32880 4.34216 4.41758 4.44259 4.47109 4.51097 4.66858 4.72668 4.75348 4.94409 5.00314 5.11629 5.13000 5.22950 5.26594 5.36209 5.46509 5.54840 5.63195 5.67648 6.00409 6.29298 6.29698 6.63140 6.86389 7.01179 7.34600 8.12063 8.34274 9.29058 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.001759 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.715847 B =15914.022761 C =16862.461802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.103 4.103 14 H 0.080 0.920 15 C 0.137 3.863 16 N -0.696 5.696 17 C 0.565 3.435 18 O -0.565 6.565 19 C 0.094 3.906 20 C -0.135 4.135 21 C 0.169 3.831 22 N -0.418 5.418 23 C -0.043 4.043 24 C -0.040 4.040 25 N -0.516 5.516 26 C 0.181 3.819 27 C -0.148 4.148 28 C 0.131 3.869 29 N -0.480 5.480 30 C -0.154 4.154 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.155 0.845 39 H 0.220 0.780 40 H 0.197 0.803 41 H 0.224 0.776 42 H 0.187 0.813 43 H 0.209 0.791 44 H 0.092 0.908 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 -21.256 -17.841 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.079 0.921 12 C -0.172 4.172 13 C -0.122 4.122 14 H 0.098 0.902 15 C 0.014 3.986 16 N -0.346 5.346 17 C 0.350 3.650 18 O -0.444 6.444 19 C -0.043 4.043 20 C -0.159 4.159 21 C 0.067 3.933 22 N -0.099 5.099 23 C -0.171 4.171 24 C -0.185 4.185 25 N -0.233 5.233 26 C -0.099 4.099 27 C -0.170 4.170 28 C -0.029 4.029 29 N -0.192 5.192 30 C -0.194 4.194 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.172 0.828 39 H 0.236 0.764 40 H 0.214 0.786 41 H 0.241 0.759 42 H 0.204 0.796 43 H 0.225 0.775 44 H 0.110 0.890 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.100 -21.793 -16.810 27.991 hybrid contribution -0.422 1.336 -0.509 1.491 sum -5.523 -20.456 -17.319 27.366 Atomic orbital electron populations 1.69806 1.06540 1.26025 1.59514 1.25532 0.96367 1.00991 1.03779 0.85160 0.77727 0.79628 0.77361 1.21494 1.22327 1.19489 1.19678 0.91538 0.85222 1.41028 0.90568 1.42296 1.05314 1.00545 1.87595 1.21394 0.95131 0.84950 0.95233 0.92128 1.23347 0.99959 0.98669 0.95226 1.22491 0.98367 0.93561 0.97755 0.90170 1.21459 0.98169 0.95895 0.83104 1.45901 1.59782 1.08323 1.20597 1.18067 0.78695 0.83590 0.84679 1.90770 1.52892 1.38437 1.62347 1.20768 0.99120 0.89466 0.94983 1.21747 0.99880 0.99559 0.94667 1.18040 0.97586 0.84809 0.92819 1.43297 1.44999 1.05069 1.16488 1.23461 1.05143 0.99730 0.88808 1.22925 1.04740 0.91881 0.98918 1.70355 1.16228 1.32523 1.04230 1.25807 1.03637 0.78603 1.01901 1.22539 1.00881 0.90406 1.03157 1.23417 0.91483 0.98856 0.89119 1.67623 1.10263 1.31557 1.09802 1.23720 0.97282 0.99258 0.99150 0.94051 0.79366 0.92309 0.87404 0.91127 0.90666 0.74618 0.82768 0.76368 0.78608 0.75929 0.79575 0.77452 0.88958 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.25 9.97 84.03 0.84 -12.41 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.24 5.31 -320.46 -1.70 -36.94 16 10 C 0.14 5.37 4.56 45.52 0.21 5.57 16 11 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 12 C -0.13 -3.95 7.39 31.12 0.23 -3.72 16 13 C -0.10 -2.90 3.63 -10.27 -0.04 -2.93 16 14 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 15 C 0.14 3.36 5.51 86.38 0.48 3.84 16 16 N -0.70 -16.91 5.55 -465.65 -2.58 -19.50 16 17 C 0.56 14.42 7.81 86.88 0.68 15.10 16 18 O -0.57 -17.22 16.32 -3.76 -0.06 -17.28 16 19 C 0.09 1.95 6.75 41.86 0.28 2.23 16 20 C -0.14 -2.35 9.06 22.73 0.21 -2.14 16 21 C 0.17 2.22 6.67 38.34 0.26 2.48 16 22 N -0.42 -5.62 2.99 -349.79 -1.04 -6.66 16 23 C -0.04 -0.42 10.89 83.03 0.90 0.48 16 24 C -0.04 -0.55 11.85 83.51 0.99 0.44 16 25 N -0.52 -10.05 11.24 -199.69 -2.25 -12.30 16 26 C 0.18 2.96 11.95 179.99 2.15 5.11 16 27 C -0.15 -1.17 9.55 22.54 0.22 -0.95 16 28 C 0.13 1.34 11.17 84.75 0.95 2.28 16 29 N -0.48 -8.61 9.54 -185.13 -1.77 -10.38 16 30 C -0.15 -4.83 7.43 31.12 0.23 -4.60 16 31 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.37 19.65 7.90 -92.71 -0.73 18.92 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.58 8.10 -2.39 -0.02 2.56 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.81 7.84 -2.39 -0.02 1.80 16 37 H 0.42 9.73 7.80 -92.71 -0.72 9.01 16 38 H 0.15 2.62 6.49 -2.91 -0.02 2.60 16 39 H 0.22 0.19 7.23 -2.91 -0.02 0.17 16 40 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.22 2.69 7.15 -2.91 -0.02 2.67 16 42 H 0.19 0.00 6.94 -2.91 -0.02 -0.02 16 43 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.09 2.47 7.90 -2.39 -0.02 2.45 16 45 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -74.86 384.83 1.54 -73.32 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.41 Total: 33.17 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 9.04 Total: 7.05 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -9.06 Total: -143.73 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.06 Total: -17.28 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.86 1.54 -73.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086524867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.585 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds