Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00352 * 2 1 4 4 H 1.48503 * 109.46640 * 269.99861 * 3 2 1 5 5 H 1.48502 * 109.47297 * 29.99108 * 3 2 1 6 6 H 1.48494 * 109.47276 * 149.99844 * 3 2 1 7 7 C 1.38812 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00183 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99827 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85387 * 23.79789 * 10 9 7 12 12 C 1.53781 * 113.61480 * 155.00041 * 10 9 7 13 13 C 1.53775 * 87.08392 * 89.10884 * 12 10 9 14 14 H 1.08998 * 113.62010 * 270.79818 * 13 12 10 15 15 C 1.53008 * 113.61268 * 139.97932 * 13 12 10 16 16 N 1.46497 * 109.46839 * 176.52793 * 15 13 12 17 17 C 1.34780 * 119.99841 * 179.97438 * 16 15 13 18 18 O 1.21572 * 119.99782 * 0.02562 * 17 16 15 19 19 C 1.47718 * 120.00028 * 180.02562 * 17 16 15 20 20 C 1.39717 * 120.02187 * 180.02562 * 19 17 16 21 21 C 1.37660 * 119.97232 * 180.02562 * 20 19 17 22 22 C 1.39508 * 120.02553 * 359.97438 * 21 20 19 23 23 C 1.48289 * 119.97452 * 180.02562 * 22 21 20 24 24 N 1.34014 * 125.65150 * 180.02562 * 23 22 21 25 25 C 1.30642 * 109.78358 * 179.97438 * 24 23 22 26 26 N 1.34574 * 108.30780 * 0.02562 * 25 24 23 27 27 H 0.96999 * 126.74161 * 179.73829 * 26 25 24 28 28 N 1.31550 * 125.65630 * 359.97438 * 23 22 21 29 29 C 1.39495 * 120.04815 * 0.27853 * 22 21 20 30 30 C 1.37664 * 120.02544 * 359.44775 * 29 22 21 31 31 C 1.53781 * 87.17171 * 25.39417 * 13 12 10 32 32 H 0.97003 * 119.99876 * 0.02562 * 1 2 3 33 33 H 0.96995 * 119.99900 * 359.97438 * 9 7 2 34 34 H 1.09008 * 113.60889 * 334.55899 * 12 10 9 35 35 H 1.08997 * 113.61256 * 203.66424 * 12 10 9 36 36 H 1.09004 * 109.46645 * 56.53613 * 15 13 12 37 37 H 1.08994 * 109.47109 * 296.53355 * 15 13 12 38 38 H 0.96995 * 120.00385 * 0.02562 * 16 15 13 39 39 H 1.07998 * 120.01072 * 359.97438 * 20 19 17 40 40 H 1.07994 * 119.99028 * 179.97438 * 21 20 19 41 41 H 1.08004 * 125.85060 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.98567 * 179.72260 * 29 22 21 43 43 H 1.08007 * 120.01458 * 180.24600 * 30 29 22 44 44 H 1.08998 * 113.61711 * 89.15854 * 31 13 12 45 45 H 1.09004 * 113.61235 * 220.06060 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0462 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5278 -3.2970 -0.4046 12 6 5.5261 -2.3660 -0.5938 13 6 6.0123 -2.0239 0.8244 14 1 5.9883 -0.9576 1.0490 15 6 7.3465 -2.6780 1.1894 16 7 7.7632 -2.2279 2.5197 17 6 8.9168 -2.6773 3.0525 18 8 9.6117 -3.4558 2.4288 19 6 9.3367 -2.2238 4.3942 20 6 10.5328 -2.6889 4.9466 21 6 10.9229 -2.2661 6.1973 22 6 10.1248 -1.3731 6.9127 23 6 10.5464 -0.9180 8.2596 24 7 9.8704 -0.0667 9.0435 25 6 10.5220 0.1180 10.1606 26 7 11.6471 -0.6192 10.1207 27 1 12.3273 -0.6778 10.8097 28 7 11.6453 -1.2835 8.8834 29 6 8.9278 -0.9122 6.3642 30 6 8.5385 -1.3293 5.1114 31 6 4.7866 -2.7914 1.3474 32 1 -0.4850 0.8401 -0.0004 33 1 3.8646 -0.3623 0.0007 34 1 5.6412 -1.5472 -1.3042 35 1 5.9124 -3.3127 -0.9714 36 1 8.1023 -2.3949 0.4567 37 1 7.2310 -3.7618 1.1921 38 1 7.2086 -1.6070 3.0175 39 1 11.1505 -3.3806 4.3931 40 1 11.8471 -2.6258 6.6248 41 1 10.2110 0.7536 10.9766 42 1 8.3086 -0.2244 6.9208 43 1 7.6137 -0.9692 4.6853 44 1 4.9703 -3.8547 1.5016 45 1 4.3055 -2.3157 2.2020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086524930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 113.397981 kcal Electronic energy + Delta-G solvation = -27324.584076 eV Core-core repulsion = 23344.881788 eV Total energy + Delta-G solvation = -3979.702288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.57790 -40.39183 -39.02392 -38.25200 -34.85196 -33.72301 -33.25052 -32.39678 -31.29840 -30.88530 -30.38977 -27.65974 -25.20660 -24.98229 -23.77489 -23.26396 -22.38193 -21.79143 -21.38575 -20.36458 -19.01951 -18.77718 -17.96362 -17.62016 -16.56492 -16.11890 -16.00278 -15.53540 -15.43640 -15.19924 -14.85909 -14.56233 -14.41222 -13.98882 -13.82868 -13.63242 -13.47975 -13.02885 -12.76091 -12.73757 -12.49620 -12.44058 -12.05932 -11.59737 -11.50048 -11.35517 -10.97371 -10.92413 -10.62539 -10.52019 -10.50458 -10.34122 -10.18386 -9.93354 -9.67728 -9.54636 -9.36921 -9.17201 -8.93622 -8.88538 -7.31861 -5.81137 -3.17389 0.12323 1.03896 1.18393 2.06946 2.24274 2.90313 3.05294 3.33357 3.36575 3.42302 3.42419 3.63526 4.02677 4.35294 4.51339 4.54093 4.54617 4.65858 4.91210 4.92764 4.97117 5.06217 5.15549 5.30593 5.38163 5.41665 5.49775 5.51750 5.64224 5.69317 5.74735 5.84040 5.90122 5.97225 6.02388 6.06191 6.12031 6.22314 6.29736 6.44639 6.45204 6.48268 6.61294 6.72676 6.88238 7.39760 7.46779 7.96826 8.08031 8.38522 9.16323 9.88514 10.07706 11.36944 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.002005 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.203961 B =13962.130515 C =15707.500502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.072 0.928 12 C -0.148 4.148 13 C -0.124 4.124 14 H 0.090 0.910 15 C 0.131 3.869 16 N -0.718 5.718 17 C 0.554 3.446 18 O -0.540 6.540 19 C -0.116 4.116 20 C -0.064 4.064 21 C -0.092 4.092 22 C 0.003 3.997 23 C 0.268 3.732 24 N -0.532 5.532 25 C 0.267 3.733 26 N -0.483 5.483 27 H 0.444 0.556 28 N -0.302 5.302 29 C -0.080 4.080 30 C -0.090 4.090 31 C -0.167 4.167 32 H 0.260 0.740 33 H 0.362 0.638 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.227 0.773 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.604 -1.383 20.068 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.188 4.188 13 C -0.143 4.143 14 H 0.108 0.892 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.341 3.659 18 O -0.418 6.418 19 C -0.120 4.120 20 C -0.083 4.083 21 C -0.112 4.112 22 C 0.000 4.000 23 C -0.012 4.012 24 N -0.260 5.260 25 C -0.032 4.032 26 N -0.202 5.202 27 H 0.290 0.710 28 N -0.131 5.131 29 C -0.101 4.101 30 C -0.108 4.108 31 C -0.208 4.208 32 H 0.070 0.930 33 H 0.195 0.805 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.238 0.762 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.243 0.757 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.091 0.909 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.978 -2.310 19.203 32.387 hybrid contribution 0.713 1.808 1.193 2.280 sum 26.690 -0.501 20.396 33.595 Atomic orbital electron populations 1.69698 1.05101 1.25891 1.57203 1.24685 0.95258 0.97228 1.01899 0.86557 0.79141 0.84997 0.77829 1.21037 1.21685 1.20370 1.19116 0.80417 0.94838 1.43287 0.89027 1.42515 1.03948 1.01616 1.88906 1.21044 0.90109 0.89901 0.92890 0.91026 1.23455 0.98748 1.01619 0.94949 1.22765 0.92641 1.00098 0.98805 0.89193 1.21511 0.95956 0.99274 0.82491 1.45997 1.22805 1.48292 1.19854 1.18232 0.81169 0.80959 0.85549 1.90775 1.53732 1.34946 1.62356 1.20169 0.96876 0.99857 0.95052 1.21180 0.94879 0.97975 0.94296 1.21146 0.99728 0.96244 0.94091 1.17627 0.95658 0.98189 0.88563 1.22331 0.89403 0.94128 0.95322 1.70542 1.32055 1.20046 1.03319 1.26166 0.84458 0.94838 0.97719 1.48154 1.20697 1.35510 1.15839 0.70989 1.78252 1.21513 1.19800 0.93541 1.21145 0.95070 0.98992 0.94844 1.21311 0.99284 0.95994 0.94244 1.23890 0.96461 0.98868 1.01555 0.92985 0.80524 0.91398 0.89944 0.91568 0.91162 0.76249 0.83964 0.84506 0.75701 0.83897 0.84709 0.90899 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.80 10.45 -15.06 -0.16 -6.95 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.73 -16.57 5.11 -52.54 -0.27 -16.84 16 10 C 0.17 3.13 4.57 -67.02 -0.31 2.83 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.15 -2.15 7.39 -25.92 -0.19 -2.34 16 13 C -0.12 -1.68 3.62 -89.81 -0.33 -2.00 16 14 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 15 C 0.13 1.62 5.50 -4.04 -0.02 1.60 16 16 N -0.72 -8.32 5.51 -61.29 -0.34 -8.66 16 17 C 0.55 7.17 7.77 -12.39 -0.10 7.07 16 18 O -0.54 -8.70 16.33 5.30 0.09 -8.61 16 19 C -0.12 -1.26 5.88 -104.92 -0.62 -1.87 16 20 C -0.06 -0.66 9.58 -39.24 -0.38 -1.03 16 21 C -0.09 -0.87 9.66 -39.32 -0.38 -1.25 16 22 C 0.00 0.03 5.88 -104.82 -0.62 -0.59 16 23 C 0.27 2.70 7.77 -156.60 -1.22 1.49 16 24 N -0.53 -4.81 10.81 -12.39 -0.13 -4.95 16 25 C 0.27 1.27 13.11 -90.68 -1.19 0.08 16 26 N -0.48 -2.37 7.44 29.52 0.22 -2.15 16 27 H 0.44 0.42 8.96 -182.34 -1.63 -1.22 16 28 N -0.30 -2.76 12.42 32.09 0.40 -2.37 16 29 C -0.08 -0.75 9.67 -39.32 -0.38 -1.13 16 30 C -0.09 -0.83 9.52 -39.24 -0.37 -1.20 16 31 C -0.17 -2.56 7.44 -25.83 -0.19 -2.76 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 33 H 0.36 8.05 5.76 -40.82 -0.24 7.81 16 34 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.90 7.87 -51.93 -0.41 0.50 16 38 H 0.40 3.92 6.49 -40.82 -0.26 3.66 16 39 H 0.14 1.41 7.64 -52.49 -0.40 1.00 16 40 H 0.14 1.13 7.82 -52.49 -0.41 0.72 16 41 H 0.23 -0.11 8.06 -52.48 -0.42 -0.54 16 42 H 0.14 1.23 7.82 -52.49 -0.41 0.82 16 43 H 0.14 0.99 6.39 -52.48 -0.34 0.66 16 44 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -36.70 383.23 -11.79 -48.49 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.06 Total: 8.50 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -6.54 Total: -8.02 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.65 Total: -63.02 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.70 -11.79 -48.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086524930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.889 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds