Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47195 * 270.00104 * 3 2 1 5 5 H 1.48507 * 109.47211 * 29.99834 * 3 2 1 6 6 H 1.48498 * 109.47373 * 149.99858 * 3 2 1 7 7 C 1.38815 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99497 * 359.97438 * 7 2 1 9 9 N 1.36926 * 120.00119 * 180.02562 * 7 2 1 10 10 C 1.46512 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84602 * 336.19208 * 10 9 7 12 12 C 1.53776 * 113.69088 * 107.46167 * 10 9 7 13 13 C 1.53779 * 87.08203 * 89.12601 * 12 10 9 14 14 H 1.09000 * 113.69725 * 270.87484 * 13 12 10 15 15 C 1.53001 * 113.61430 * 139.97782 * 13 12 10 16 16 N 1.46492 * 109.47110 * 87.50690 * 15 13 12 17 17 C 1.34780 * 120.00471 * 179.97438 * 16 15 13 18 18 O 1.21514 * 119.99511 * 0.02562 * 17 16 15 19 19 C 1.48157 * 120.00551 * 179.97438 * 17 16 15 20 20 C 1.39948 * 120.89024 * 0.03381 * 19 17 16 21 21 C 1.38043 * 119.13685 * 179.97438 * 20 19 17 22 22 N 1.31858 * 120.97841 * 359.97438 * 21 20 19 23 23 C 1.32224 * 121.97185 * 359.97438 * 22 21 20 24 24 N 1.39850 * 119.61809 * 180.02562 * 23 22 21 25 25 C 1.37172 * 126.49306 * 0.02562 * 24 23 22 26 26 C 1.34613 * 106.83296 * 179.97438 * 25 24 23 27 27 N 1.34158 * 108.21400 * 359.97438 * 26 25 24 28 28 C 1.30480 * 109.37084 * 359.76359 * 27 26 25 29 29 C 1.38904 * 120.75405 * 0.02562 * 23 22 21 30 30 C 1.53777 * 113.61377 * 205.00001 * 10 9 7 31 31 H 0.97001 * 119.99839 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00743 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.61546 * 334.58164 * 12 10 9 34 34 H 1.08996 * 113.61413 * 203.67946 * 12 10 9 35 35 H 1.09004 * 109.47174 * 327.50381 * 15 13 12 36 36 H 1.09003 * 109.47194 * 207.50318 * 15 13 12 37 37 H 0.97000 * 120.00330 * 0.02562 * 16 15 13 38 38 H 1.08007 * 120.43182 * 359.94373 * 20 19 17 39 39 H 1.07994 * 119.50770 * 180.02562 * 21 20 19 40 40 H 1.08005 * 126.58073 * 359.93797 * 25 24 23 41 41 H 1.07994 * 125.89285 * 180.02562 * 26 25 24 42 42 H 1.08007 * 125.72110 * 180.23971 * 28 27 26 43 43 H 1.07997 * 120.53129 * 180.02562 * 29 23 22 44 44 H 1.08993 * 113.61674 * 156.24922 * 30 10 9 45 45 H 1.09002 * 113.69264 * 25.35320 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5278 -3.2969 0.4061 12 6 4.7876 -2.7943 -1.3420 13 6 6.0134 -2.0255 -0.8212 14 1 5.9901 -0.9593 -1.0467 15 6 7.3475 -2.6806 -1.1844 16 7 7.7836 -2.2040 -2.4992 17 6 8.9411 -2.6486 -3.0273 18 8 9.6228 -3.4452 -2.4130 19 6 9.3819 -2.1671 -4.3573 20 6 8.6113 -1.2501 -5.0811 21 6 9.0567 -0.8253 -6.3167 22 7 10.1919 -1.2701 -6.8187 23 6 10.9526 -2.1357 -6.1703 24 7 12.1478 -2.5745 -6.7489 25 6 12.6513 -2.1963 -7.9675 26 6 13.8145 -2.8541 -8.1298 27 7 14.0217 -3.6140 -7.0438 28 6 13.0337 -3.4515 -6.2071 29 6 10.5781 -2.6142 -4.9212 30 6 5.5259 -2.3659 0.5971 31 1 -0.4850 0.8401 -0.0004 32 1 3.8647 -0.3620 0.0007 33 1 4.3066 -2.3208 -2.1979 34 1 4.9713 -3.8580 -1.4934 35 1 7.2249 -3.7633 -1.2126 36 1 8.0962 -2.4191 -0.4365 37 1 7.2397 -1.5678 -2.9894 38 1 7.6800 -0.8800 -4.6784 39 1 8.4670 -0.1174 -6.8801 40 1 12.2006 -1.5042 -8.6635 41 1 14.4686 -2.7818 -8.9861 42 1 12.9350 -3.9351 -5.2464 43 1 11.2024 -3.3209 -4.3946 44 1 5.9114 -3.3123 0.9759 45 1 5.6422 -1.5469 1.3070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086554274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 114.101733 kcal Electronic energy + Delta-G solvation = -27588.878084 eV Core-core repulsion = 23609.206314 eV Total energy + Delta-G solvation = -3979.671771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83177 -41.06423 -39.72168 -38.72919 -35.21835 -34.72487 -33.55523 -33.19019 -30.91367 -30.61478 -29.76492 -28.07167 -25.36676 -25.21567 -24.71665 -23.50343 -22.34987 -21.89855 -21.36443 -20.84107 -19.54853 -18.58726 -17.80121 -17.65233 -17.05062 -16.47567 -16.30867 -15.95643 -15.70616 -15.36891 -14.98985 -14.57932 -14.43120 -14.37092 -14.30155 -14.25253 -13.90428 -13.70334 -13.64020 -12.93828 -12.70364 -12.61430 -12.17181 -11.73150 -11.49029 -11.32761 -11.03180 -10.86734 -10.64753 -10.61475 -10.60599 -10.42951 -10.26588 -10.10919 -9.78249 -9.65568 -9.38986 -9.35224 -9.01845 -8.97678 -7.40675 -5.88512 -3.25367 -0.09639 0.14321 1.61410 1.85219 2.43816 2.63417 2.66657 3.19849 3.26000 3.27827 3.35489 3.62225 3.91276 3.97787 4.14147 4.21781 4.29447 4.46839 4.62852 4.74344 4.77966 4.83281 4.90428 4.94289 5.04700 5.18039 5.26506 5.27543 5.30961 5.34630 5.57772 5.60151 5.68934 5.70530 5.75444 5.99479 6.02100 6.11837 6.20120 6.35114 6.48890 6.57393 6.58929 6.76267 7.04827 7.07561 7.49904 7.70717 7.88779 8.30903 9.08295 9.80297 9.99131 11.29446 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.001878 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.739528 B =14903.213939 C =15829.193218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.729 5.729 10 C 0.173 3.827 11 H 0.072 0.928 12 C -0.167 4.167 13 C -0.125 4.125 14 H 0.091 0.909 15 C 0.129 3.871 16 N -0.711 5.711 17 C 0.555 3.445 18 O -0.527 6.527 19 C -0.054 4.054 20 C -0.152 4.152 21 C 0.137 3.863 22 N -0.485 5.485 23 C 0.344 3.656 24 N -0.412 5.412 25 C -0.026 4.026 26 C -0.030 4.030 27 N -0.477 5.477 28 C 0.196 3.804 29 C -0.125 4.125 30 C -0.148 4.148 31 H 0.261 0.739 32 H 0.362 0.638 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.403 0.597 38 H 0.151 0.849 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.214 0.786 43 H 0.157 0.843 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.185 -3.099 -13.263 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.369 5.369 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.208 4.208 13 C -0.144 4.144 14 H 0.109 0.891 15 C 0.007 3.993 16 N -0.362 5.362 17 C 0.340 3.660 18 O -0.404 6.404 19 C -0.066 4.066 20 C -0.173 4.173 21 C -0.021 4.021 22 N -0.197 5.197 23 C 0.116 3.884 24 N -0.095 5.095 25 C -0.155 4.155 26 C -0.174 4.174 27 N -0.193 5.193 28 C -0.086 4.086 29 C -0.148 4.148 30 C -0.188 4.188 31 H 0.071 0.929 32 H 0.195 0.805 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.169 0.831 39 H 0.194 0.806 40 H 0.200 0.800 41 H 0.195 0.805 42 H 0.230 0.770 43 H 0.174 0.826 44 H 0.101 0.899 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.274 -3.923 -13.456 28.030 hybrid contribution -0.706 1.926 0.285 2.071 sum 23.568 -1.997 -13.171 27.072 Atomic orbital electron populations 1.69695 1.05104 1.25952 1.56979 1.24688 0.95244 0.97211 1.01805 0.86572 0.79249 0.85062 0.77735 1.21067 1.21601 1.20356 1.19107 0.80382 0.94864 1.43539 0.89005 1.42505 1.03965 1.01556 1.88906 1.20995 0.90108 0.89987 0.92832 0.90996 1.23875 0.96370 0.98870 1.01684 1.22782 0.92446 1.00078 0.99068 0.89123 1.21603 0.96045 0.99256 0.82404 1.45971 1.22227 1.46704 1.21340 1.18000 0.81646 0.81639 0.84738 1.90807 1.54396 1.33622 1.61562 1.20269 0.94547 0.96570 0.95210 1.22472 1.01257 0.97423 0.96127 1.22634 0.90349 0.96430 0.92707 1.66884 1.06307 1.10664 1.35843 1.18029 0.86796 0.93791 0.89804 1.43146 1.15546 1.34489 1.16270 1.22954 0.97889 1.05581 0.89102 1.22444 0.97262 0.98794 0.98901 1.70365 1.23599 1.22457 1.02916 1.25466 0.86492 0.95293 1.01339 1.21621 0.97535 1.01616 0.94030 1.23468 0.98787 1.01703 0.94825 0.92922 0.80540 0.91238 0.90832 0.90834 0.91242 0.76110 0.83096 0.80572 0.79968 0.80536 0.76981 0.82580 0.89903 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 20.84 27.74 -169.99 -4.71 16.13 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.11 6.52 56.52 0.37 -5.75 16 7 C -0.25 -6.64 10.45 -15.06 -0.16 -6.80 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.73 -15.80 5.12 -52.64 -0.27 -16.07 16 10 C 0.17 2.94 4.56 -67.12 -0.31 2.64 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.17 -2.31 7.43 -25.92 -0.19 -2.51 16 13 C -0.12 -1.47 3.63 -89.80 -0.33 -1.80 16 14 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 15 C 0.13 1.35 5.51 -4.05 -0.02 1.32 16 16 N -0.71 -6.48 5.51 -61.15 -0.34 -6.81 16 17 C 0.55 5.75 7.80 -12.19 -0.10 5.66 16 18 O -0.53 -7.18 16.44 5.35 0.09 -7.09 16 19 C -0.05 -0.45 5.91 -104.68 -0.62 -1.07 16 20 C -0.15 -0.92 9.61 -39.01 -0.37 -1.29 16 21 C 0.14 0.83 11.17 -17.61 -0.20 0.64 16 22 N -0.48 -4.10 9.86 -12.34 -0.12 -4.23 16 23 C 0.34 3.07 7.50 -154.42 -1.16 1.91 16 24 N -0.41 -3.75 2.98 -63.84 -0.19 -3.94 16 25 C -0.03 -0.22 11.17 -16.44 -0.18 -0.40 16 26 C -0.03 -0.26 11.85 -17.82 -0.21 -0.47 16 27 N -0.48 -5.03 11.24 -14.46 -0.16 -5.19 16 28 C 0.20 1.74 11.90 -89.58 -1.07 0.67 16 29 C -0.13 -1.06 9.07 -38.83 -0.35 -1.41 16 30 C -0.15 -1.97 7.39 -25.92 -0.19 -2.16 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.36 7.64 5.76 -40.82 -0.24 7.41 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 35 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 2.83 6.61 -40.82 -0.27 2.56 16 38 H 0.15 0.55 6.53 -52.48 -0.34 0.20 16 39 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.18 1.21 8.06 -52.48 -0.42 0.78 16 41 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.21 1.22 7.04 -52.48 -0.37 0.85 16 43 H 0.16 1.19 6.43 -52.49 -0.34 0.86 16 44 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -34.60 381.47 -10.50 -45.10 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.76 Total: 8.70 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -5.55 Total: -4.99 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.31 Total: -63.58 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.09 Total: -7.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.60 -10.50 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086554274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.203 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds