Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00573 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00033 * 3 2 1 5 5 H 1.48504 * 109.46827 * 29.99426 * 3 2 1 6 6 H 1.48499 * 109.47632 * 149.99678 * 3 2 1 7 7 C 1.38819 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00060 * 174.38243 * 7 2 1 9 9 N 1.36934 * 119.99820 * 354.38322 * 7 2 1 10 10 C 1.44349 * 116.42399 * 334.85224 * 9 7 2 11 11 C 1.51575 * 113.01496 * 188.03280 * 10 9 7 12 12 C 1.52915 * 111.66071 * 320.12359 * 11 10 9 13 13 H 1.09005 * 112.47245 * 293.93215 * 12 11 10 14 14 C 1.55411 * 106.56894 * 169.88811 * 12 11 10 15 15 N 1.47385 * 106.74045 * 270.99678 * 14 12 11 16 16 C 1.34770 * 125.73949 * 179.03132 * 15 14 12 17 17 O 1.21574 * 120.00699 * 6.02350 * 16 15 14 18 18 C 1.47694 * 119.99498 * 186.03009 * 16 15 14 19 19 C 1.39988 * 120.38012 * 204.05193 * 18 16 15 20 20 N 1.31384 * 121.15481 * 180.02562 * 19 18 16 21 21 C 1.32546 * 121.79426 * 359.97438 * 20 19 18 22 22 N 1.37589 * 133.56219 * 180.02562 * 21 20 19 23 23 H 0.96997 * 126.23928 * 359.97438 * 22 21 20 24 24 C 1.36170 * 107.51951 * 179.97438 * 22 21 20 25 25 N 1.30057 * 110.11509 * 0.02562 * 24 22 21 26 26 C 1.35773 * 109.43686 * 359.97438 * 25 24 22 27 27 C 1.39483 * 133.75083 * 180.02562 * 26 25 24 28 28 C 1.47936 * 108.51572 * 359.28795 * 15 14 12 29 29 C 1.54099 * 109.62689 * 60.86247 * 12 11 10 30 30 H 1.09000 * 109.19091 * 187.52554 * 29 12 11 31 31 C 1.43976 * 116.42662 * 154.87906 * 9 7 2 32 32 H 0.97000 * 119.99728 * 0.02562 * 1 2 3 33 33 H 1.09005 * 108.77484 * 67.12085 * 10 9 7 34 34 H 1.09002 * 108.68716 * 308.88084 * 10 9 7 35 35 H 1.09003 * 109.04056 * 199.56409 * 11 10 9 36 36 H 1.08994 * 108.98364 * 80.64511 * 11 10 9 37 37 H 1.08997 * 110.01056 * 151.67183 * 14 12 11 38 38 H 1.09008 * 110.00480 * 30.31235 * 14 12 11 39 39 H 1.07999 * 119.42290 * 0.04331 * 19 18 16 40 40 H 1.07994 * 124.93784 * 179.97438 * 24 22 21 41 41 H 1.07998 * 120.97069 * 359.95343 * 27 26 25 42 42 H 1.09004 * 110.56423 * 93.91509 * 28 15 14 43 43 H 1.08997 * 110.56848 * 216.77513 * 28 15 14 44 44 H 1.09004 * 108.11333 * 304.64198 * 31 9 7 45 45 H 1.09001 * 108.11519 * 61.30900 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0863 -1.2045 -0.0910 9 7 1.3304 -2.3852 0.1171 10 6 0.0472 -2.3264 0.7755 11 6 -0.5487 -3.6957 1.0356 12 6 -0.3140 -4.6458 -0.1393 13 1 -0.8456 -4.3353 -1.0389 14 6 -0.7303 -6.0622 0.3462 15 7 0.4669 -6.6723 0.9518 16 6 0.5284 -7.8959 1.5133 17 8 -0.4299 -8.6416 1.4527 18 6 1.7601 -8.3310 2.2024 19 6 2.0488 -9.6935 2.3435 20 7 3.1397 -10.0975 2.9541 21 6 4.0139 -9.2404 3.4620 22 7 5.2059 -9.3875 4.1333 23 1 5.6350 -10.2266 4.3627 24 6 5.6733 -8.1404 4.4170 25 7 4.8494 -7.2407 3.9661 26 6 3.7984 -7.8526 3.3624 27 6 2.6504 -7.3879 2.7208 28 6 1.5880 -5.7131 0.8451 29 6 1.1996 -4.8310 -0.3609 30 1 1.3608 -5.3987 -1.2773 31 6 1.9744 -3.5509 -0.4299 32 1 -0.4850 0.8401 -0.0004 33 1 -0.6416 -1.7569 0.1514 34 1 0.1664 -1.8091 1.7275 35 1 -1.6212 -3.5914 1.2000 36 1 -0.0913 -4.1172 1.9307 37 1 -1.0676 -6.6621 -0.4991 38 1 -1.5247 -5.9835 1.0886 39 1 1.3629 -10.4254 1.9433 40 1 6.5937 -7.9292 4.9409 41 1 2.4553 -6.3297 2.6281 42 1 1.6662 -5.1131 1.7517 43 1 2.5234 -6.2375 0.6499 44 1 2.2054 -3.3509 -1.4762 45 1 2.9154 -3.6984 0.1002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087980184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 101.501292 kcal Electronic energy + Delta-G solvation = -29810.818715 eV Core-core repulsion = 25830.600548 eV Total energy + Delta-G solvation = -3980.218167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68739 -40.56102 -38.90723 -37.78126 -35.70512 -34.15466 -32.79220 -31.83628 -31.27418 -30.21205 -29.98433 -27.92392 -25.86836 -24.66090 -24.21919 -23.13708 -22.16770 -22.08460 -21.33582 -19.78742 -19.13022 -17.80310 -17.69247 -17.24570 -16.98650 -16.12915 -15.87498 -15.78000 -15.55145 -14.92490 -14.42532 -14.39062 -14.13483 -13.78746 -13.62208 -13.58879 -13.08427 -13.01351 -12.83018 -12.65390 -12.32451 -12.24985 -11.76823 -11.51407 -11.37943 -11.29517 -10.94669 -10.77266 -10.47330 -10.23607 -10.21984 -10.18354 -9.71536 -9.64716 -9.52641 -9.47215 -9.20374 -8.92519 -8.57409 -8.49476 -6.67223 -5.50871 -3.24599 0.41465 0.58284 2.15822 2.40852 2.72751 2.90760 3.38405 3.44832 3.46579 3.55150 3.71471 4.05458 4.34301 4.39640 4.48368 4.56245 4.70045 4.76614 4.93799 5.04586 5.09671 5.35539 5.40904 5.43662 5.50776 5.55424 5.64008 5.68626 5.76635 5.86103 5.90413 6.05373 6.08725 6.16284 6.22339 6.38557 6.57669 6.61632 6.68471 6.71968 6.81681 6.84199 7.30998 7.42532 7.50421 7.53404 7.82895 8.07507 8.10463 8.59427 9.35604 10.03427 10.28727 11.28809 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003142 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.580290 B = 8909.867804 C =10613.493447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.908 3.092 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.595 5.595 10 C 0.163 3.837 11 C -0.129 4.129 12 C -0.081 4.081 13 H 0.100 0.900 14 C 0.110 3.890 15 N -0.609 5.609 16 C 0.583 3.417 17 O -0.540 6.540 18 C -0.192 4.192 19 C 0.197 3.803 20 N -0.488 5.488 21 C 0.254 3.746 22 N -0.590 5.590 23 H 0.430 0.570 24 C 0.275 3.725 25 N -0.476 5.476 26 C -0.007 4.007 27 C 0.013 3.987 28 C 0.099 3.901 29 C -0.097 4.097 30 H 0.075 0.925 31 C 0.178 3.822 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.179 0.821 40 H 0.228 0.772 41 H 0.161 0.839 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.023 0.977 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.659 -18.468 6.175 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.320 5.320 10 C 0.039 3.961 11 C -0.167 4.167 12 C -0.100 4.100 13 H 0.118 0.882 14 C -0.012 4.012 15 N -0.341 5.341 16 C 0.371 3.629 17 O -0.418 6.418 18 C -0.200 4.200 19 C 0.028 3.972 20 N -0.200 5.200 21 C 0.018 3.982 22 N -0.204 5.204 23 H 0.270 0.730 24 C -0.013 4.013 25 N -0.194 5.194 26 C -0.126 4.126 27 C -0.014 4.014 28 C -0.023 4.023 29 C -0.117 4.117 30 H 0.094 0.906 31 C 0.051 3.949 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.196 0.804 40 H 0.244 0.756 41 H 0.178 0.822 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.041 0.959 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 7.297 -18.788 6.367 21.138 hybrid contribution 0.666 0.495 0.181 0.850 sum 7.964 -18.294 6.548 20.999 Atomic orbital electron populations 1.69889 1.05058 1.24508 1.55929 1.25133 0.95461 0.98212 1.00656 0.86196 0.78909 0.83461 0.77643 1.21417 1.21635 1.20587 1.19264 0.90764 0.83981 1.44745 0.91507 1.42724 1.19862 1.03464 1.65972 1.20610 0.87869 0.90417 0.97213 1.21837 1.00547 0.98349 0.95975 1.22095 0.95395 0.92538 0.99943 0.88172 1.22489 0.87104 0.93983 0.97640 1.48589 1.13214 1.14839 1.57486 1.17444 0.86686 0.80356 0.78386 1.90785 1.37748 1.52774 1.60539 1.20653 0.97645 0.95293 1.06400 1.22712 0.90716 0.93234 0.90577 1.66519 1.03160 1.37714 1.12647 1.19208 0.89538 0.91945 0.97544 1.42893 1.18243 1.10887 1.48426 0.73046 1.25579 0.99765 0.77742 0.98242 1.70549 1.02715 1.31517 1.14654 1.19556 0.97368 0.90789 1.04900 1.21570 0.88469 1.01635 0.89691 1.22889 0.89263 0.90347 0.99771 1.21652 0.95999 0.97101 0.96916 0.90623 1.19197 0.93620 0.85242 0.96829 0.93839 0.88619 0.96036 0.92338 0.93783 0.91505 0.91057 0.80443 0.75619 0.82213 0.90087 0.90451 0.95876 0.96948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.36 9.92 55.49 0.55 -24.81 16 2 C 0.00 0.07 5.27 -17.43 -0.09 -0.02 16 3 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.88 9.41 -15.06 -0.14 -7.02 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.59 -14.24 3.25 -179.69 -0.58 -14.82 16 10 C 0.16 3.79 4.74 -5.91 -0.03 3.76 16 11 C -0.13 -2.32 4.78 -27.50 -0.13 -2.45 16 12 C -0.08 -1.27 3.65 -88.81 -0.32 -1.59 16 13 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.11 1.56 6.25 -2.28 -0.01 1.55 16 15 N -0.61 -8.71 3.34 -170.62 -0.57 -9.28 16 16 C 0.58 8.62 7.65 -12.40 -0.09 8.52 16 17 O -0.54 -9.27 16.94 5.30 0.09 -9.18 16 18 C -0.19 -2.50 5.69 -104.84 -0.60 -3.09 16 19 C 0.20 2.36 10.74 -17.09 -0.18 2.18 16 20 N -0.49 -5.89 10.36 -11.96 -0.12 -6.02 16 21 C 0.25 2.91 8.45 -155.62 -1.31 1.60 16 22 N -0.59 -4.26 6.20 -13.22 -0.08 -4.35 16 23 H 0.43 1.59 8.96 -40.82 -0.37 1.22 16 24 C 0.28 1.94 12.97 -89.70 -1.16 0.78 16 25 N -0.48 -5.64 11.29 -12.02 -0.14 -5.77 16 26 C -0.01 -0.08 7.23 -84.69 -0.61 -0.70 16 27 C 0.01 0.17 8.23 -38.58 -0.32 -0.14 16 28 C 0.10 1.39 3.72 -2.53 -0.01 1.38 16 29 C -0.10 -1.53 2.84 -90.92 -0.26 -1.78 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 C 0.18 3.49 5.75 -6.97 -0.04 3.45 16 32 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.10 2.52 5.70 -51.93 -0.30 2.23 16 34 H 0.02 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.78 6.60 -51.93 -0.34 0.43 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.02 7.79 -51.92 -0.40 0.62 16 39 H 0.18 1.85 7.82 -52.49 -0.41 1.44 16 40 H 0.23 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.16 2.07 4.68 -52.49 -0.25 1.82 16 42 H 0.08 1.21 5.91 -51.93 -0.31 0.90 16 43 H 0.08 0.99 6.83 -51.93 -0.35 0.63 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.01 0.25 7.80 -51.93 -0.40 -0.16 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -33.58 354.55 -11.49 -45.07 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.63 Total: 1.00 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -5.32 Total: 6.42 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.95 Total: -65.05 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.58 -11.49 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087980184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.571 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds